Construct: ORF ccsbBroadEn_09276

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008034.1_s300c1, BRDN0000456686
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATG16L2 (89849)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 89849 ATG16L2 autophagy related 16 like 2 NM_033388.2 99.9% 99.8% 733G>T
2 human 89849 ATG16L2 autophagy related 16 like 2 XM_005274376.5 96.8% 95.9% (many diffs)
3 human 89849 ATG16L2 autophagy related 16 like 2 XM_006718732.2 96.5% 96.2% 733G>T;824_825ins63
4 human 89849 ATG16L2 autophagy related 16 like 2 XM_011545332.1 93.8% 93.8% 710_711ins114
5 human 89849 ATG16L2 autophagy related 16 like 2 NM_001318766.2 82.8% 82.7% 0_1ins318;415G>T
6 human 89849 ATG16L2 autophagy related 16 like 2 XM_011545333.1 82.8% 82.7% 0_1ins318;415G>T
7 human 89849 ATG16L2 autophagy related 16 like 2 XM_011545334.1 82.8% 82.7% 0_1ins318;415G>T
8 human 89849 ATG16L2 autophagy related 16 like 2 XR_950094.1 81.6% (many diffs)
9 human 89849 ATG16L2 autophagy related 16 like 2 XM_006718733.3 54.8% 53.4% 733G>T;995_996ins47;1020_1021ins790
10 human 89849 ATG16L2 autophagy related 16 like 2 XM_006718734.2 52.8% 43.3% (many diffs)
11 human 89849 ATG16L2 autophagy related 16 like 2 XR_001748024.2 39.1% (many diffs)
12 mouse 73683 Atg16l2 autophagy related 16-like 2... NM_001111111.1 84.5% 82.2% (many diffs)
13 mouse 73683 Atg16l2 autophagy related 16-like 2... XM_006508226.3 78.5% 76% (many diffs)
14 mouse 73683 Atg16l2 autophagy related 16-like 2... XM_006508227.3 77.6% 75.5% (many diffs)
15 mouse 73683 Atg16l2 autophagy related 16-like 2... XM_011241916.2 76.7% 71.9% (many diffs)
16 mouse 73683 Atg16l2 autophagy related 16-like 2... XR_378274.3 67.4% (many diffs)
17 mouse 73683 Atg16l2 autophagy related 16-like 2... XM_006508228.1 64.7% 61.5% (many diffs)
18 mouse 73683 Atg16l2 autophagy related 16-like 2... XM_006508230.1 64.7% 61.5% (many diffs)
19 mouse 73683 Atg16l2 autophagy related 16-like 2... XM_011241918.1 64.7% 61.5% (many diffs)
20 mouse 73683 Atg16l2 autophagy related 16-like 2... XR_001778004.1 63.2% (many diffs)
21 mouse 73683 Atg16l2 autophagy related 16-like 2... XR_378276.3 59% (many diffs)
22 mouse 73683 Atg16l2 autophagy related 16-like 2... XR_001778005.1 54.9% (many diffs)
23 mouse 73683 Atg16l2 autophagy related 16-like 2... XR_001778007.1 43.8% (many diffs)
24 mouse 73683 Atg16l2 autophagy related 16-like 2... XR_001778006.1 25.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1926
ORF length:
1857
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGGGCCG GGCGTCCCCG GTGCCCCCGC AGCGCGCTGG AAACGCCACA
121TCGTGCGGCA GCTGCGGCTT CGGGACCGTA CGCAAAAGGC GCTTTTCCTG GAGCTGGTGC
181CGGCCTATAA CCATCTCTTA GAGAAGGCTG AGCTGCTGGA CAAGTTCTCA AAGAAGCTGC
241AGCCGGAGCC AAACAGTGTC ACTCCCACCA CCCACCAGGG CCCCTGGGAG GAGTCAGAGC
301TTGACTCAGA CCAAGTCCCA TCACTGGTCG CACTGAGGGT GAAGTGGCAG GAGGAGGAGG
361AGGGGCTCCG GCTGGTCTGT GGTGAGATGG CCTACCAGGT GGTGGAGAAG GGCGCGGCCC
421TGGGCACGCT GGAGTCGGAG CTGCAGCAGA GGCAAAGCAG GCTGGCAGCC CTGGAGGCCC
481GCGTGGCGCA GCTGCGAGAG GCGCGGGCGC AGCAGGCCCA GCAGGTGGAG GAGTGGCGGG
541CGCAGAATGC GGTGCAGCGG GCAGCCTACG AGGCGCTGCG CGCGCACGTC GGGCTCCGGG
601AGGCGGCACT GCGCAGGCTC CAGGAAGAGG CGCGCGACCT GCTGGAGAGG CTCGTGCAGC
661GCAAGGCGCG CGCCGCGGCC GAGCGCAACC TGCGCAACGA GCGCCGGGAG CGGGCCAAGC
721AGGCGCGGGT GTCCCAGGAG CTGAAGAAGG CTGCCAAGCG GACCGTGAGC ATCAGCGAGG
781GCCCGGACAC CCTAGGCGAT TGGATGAGGG AGAGAAGGGA GACTCTGGCT CTGGCCCCTG
841AGCCAGAGCC CCTGGAGAAG GAAGCTTGTG AGAAGTGGAA GAGGCCCTTC AGGTCTGCCT
901CAGCCACCTC CCTGACGCTG TCCCACTGTG TGGATGTGGT GAAGGGGCTT CTGGATTTTA
961AGAAGAGGAG AGGTCACTCA ATTGGGGGAG CCCCTGAGCA GCGATACCAG ATCATCCCTG
1021TGTGTGTGGC TGCCCGACTT CCTACCCGGG CTCAGGATGT GCTGGATGCC CACCTCTCTG
1081AGGTCAATGC TGTTCGTTTT GGCCCCAACA GCAGCCTCCT GGCCACTGGA GGGGCTGACC
1141GCCTGATCCA CCTCTGGAAT GTTGTGGGAA GTCGCCTGGA GGCCAACCAG ACCCTGGAGG
1201GAGCTGGTGG CAGCATCACC AGTGTGGACT TTGACCCCTC GGGCTACCAG GTTTTAGCAG
1261CAACTTACAA CCAGGCTGCC CAGCTCTGGA AGGTGGGGGA GGCACAGTCC AAGGAGACAC
1321TGTCTGGACA CAAGGATAAG GTGACAGCTG CCAAATTCAA GCTAACGAGG CACCAGGCAG
1381TGACTGGGAG CCGCGACCGG ACAGTGAAGG AGTGGGACCT CGGCCGTGCC TATTGCTCCA
1441GGACCATCAA TGTCCTTTCC TACTGTAATG ACGTGGTGTG TGGGGACCAT ATCATCATTA
1501GTGGCCACAA TGACCAGAAG ATCCGGTTCT GGGACAGCAG GGGGCCCCAC TGCACCCAGG
1561TCATCCCTGT GCAGGGCCGG GTCACCTCCC TGAGCCTCAG CCACGACCAA CTGCACCTGC
1621TCAGCTGTTC CCGAGACAAC ACACTCAAGG TCATCGACCT GCGTGTCAGC AACATCCGCC
1681AGGTGTTCAG GGCCGATGGC TTCAAGTGTG GTTCTGACTG GACCAAAGCT GTGTTCAGCC
1741CGGACAGAAG CTATGCACTG GCAGGCTCCT GTGATGGGGC CCTTTACATC TGGGATGTGG
1801ACACCGGGAA ACTGGAGAGC AGACTACAGG GACCCCATTG CGCTGCCGTC AACGCCGTGG
1861CCTGGTGCTA CTCCGGGAGC CACATGGTGA GCGTGGACCA GGGCAGGAAG GTTGTGCTCT
1921GGCAGTTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
1981gttgcaacga ac

Download FASTA (ORF) (Full)