Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09284
Subject:
NM_001270451.1
Aligned Length:
3212
Identities:
696
Gaps:
2488

Alignment

Query    1  ATGTTCACCCTGTCTCAGACCTCGAGAGCATGGTTCATCGATAGAGCCCGTCAGGCACGAGAAGAAAGGCTTGT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTTCACCCTGTCTCAGACCTCGAGAGCATGGTTCATCGATAGAGCCCGTCAGGCACGAGAAGAAAGGCTTGT  74

Query   75  GCAGAAGGAACGGGAGCGGGCAGCTGTTGTGATCCAGGCCCATGTCCGGAGTTTTCTCTGTCGGAGTCGACTGC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCAGAAGGAACGGGAGCGGGCAGCTGTTGTGATCCAGGCCCATGTCCGGAGTTTTCTCTGTCGGAGTCGACTGC  148

Query  149  AGAGAGATATCAGGAGAGAGATTGATGACTTTTTTAAAGCAGATGACCCTGAGTCCACTAAAAGAAGTGCACTT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGAGAGATATCAGGAGAGAGATTGATGACTTTTTTAAAGCAGATGACCCTGAGTCCACTAAAAGAAGTGCACTT  222

Query  223  TGTATTTTCAAGATTGCCAGGAAACTGCTGTTCCTATTCAGAATCAAAGAGGATAATGAGAGATTTGAGAAGTT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTATTTTCAAGATTGCCAGGAAACTGCTGTTCCTATTCAGAATCAAAGAGGATAATGAGAGATTTGAGAAGTT  296

Query  297  GTGTCGCAGCATCCTGAGCAGCATGGATGCTGAGAATGAGCCTAAGGTGTGGTATGTGTCCCTGGCTTGTTCTA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTGTCGCAGCATCCTGAGCAGCATGGATGCTGAGAATGAGCCTAAGGTGTGGTATGTGTCCCTGGCTTGTTCTA  370

Query  371  AGGACCTCACCCTCCTTTGGATTCAACAGATCAAGAACATTTTGTGGTACTGCTGTGATTTTCTCAAGCAGCTC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGACCTCACCCTCCTTTGGATTCAACAGATCAAGAACATTTTGTGGTACTGCTGTGATTTTCTCAAGCAGCTC  444

Query  445  AAGCCTGAAATCCTGCAGGACTCCCGACTCATCACCCTGTACCTCACGATGCTTGTCACCTTCACAGACACTTC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGCCTGAAATCCTGCAGGACTCCCGACTCATCACCCTGTACCTCACGATGCTTGTCACCTTCACAGACACTTC  518

Query  519  AACGTGGAAAATTCTTCGGGGAAAAGGTGAAAGTCTTCGACCAGCGATGAACCACATTTGTGCAAATATAATGG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AACGTGGAAAATTCTTCGGGGAAAAGGTGAAAGTCTTCGACCAGCGATGAACCACATTTGTGCAAATATAATGG  592

Query  593  GACATCTCAACCAGCATGGATTTTATTCTGTGCTGCAGATATTGTTAACCCGTGGCCTGGCAAGACCCCGTCCT  666
            |||||||||||||||||||||||||||||||||||||| |..|||.|     |||.|||         ..||||
Sbjct  593  GACATCTCAACCAGCATGGATTTTATTCTGTGCTGCAG-TGCTGTGA-----TGGGCTG---------TTTCCT  651

Query  667  --TGTCTATCCAAAGGCACTTTAACAGCAGCTTTTTCTCTAGCGTTACGCCCTGTGATTGCTGCACAGTTCTCA  738
              |.|...|.||.|.||.| .|.|||.||                   .||||||||  |.||..|.|||..||
Sbjct  652  GATTTGGTTTCATATGCTC-CTCACAACA-------------------ACCCTGTGA--GGTGGTCCGTTGGCA  703

Query  739  GACAATCTGATTCGGCCGTTCCTCATCCACATCATGTCTG-----TGCCT-GCTCTGGTGACTCATCTCAGCAC  806
            |  ||.|||.|                      |||.|||     ||.|| ||                     
Sbjct  704  G--AAGCTGGT----------------------ATGACTGGCAGTTGTCTCGC---------------------  732

Query  807  AGTGACCCCTGAGCGCCTCACTGTTTTAGAATCCCATGACATGCTTCGTAAATTCATCATATTTTTAAGAGACC  880
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query  881  AAGATCGATGCCGTGATGTATGTGAAAGTTTAGAAGGATGCCATACGCTTTGTCTAATGGGCAACCTCCTACAC  954
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query  955  TTGGGCTCCCTCAGCCCCAGAGTGTTAGAGGAGGAGACAGATGGGTTCGTGAGTTTGCTCACCCAGACGCTGTG  1028
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1029  CTACTGTCAGAAGTATGTGTCTCAGAAGAAGTCCAACCTGACCCACTGGCATCCTGTCCTTGGCTGGTTCTCCC  1102
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1103  AATCTGTGGATTATGGCCTTAACGAGTCAATGCACTTGATCACCAAACAGCTGCAGTTCTTGTGGGGGGTGCCT  1176
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1177  CTGATCCGGATCTTCTTCTGTGACATCCTGAGCAAGAAGCTACTGGAGAGCCAGGAGCCAGCCCACGCACAGCC  1250
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1251  AGCATCCCCTCAGAATGTGCTCCCAGTGAAGAGTCTCCTAAAGCGTGCTTTTCAAAAGTCGGCATCAGTCCGGA  1324
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1325  ATATTCTCAGGCCTGTCGGGGGTAAACGGGTCGACTCTGCAGAAGTCCAGAAGGTTTGCAACATCTGTGTCCTC  1398
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1399  TACCAGACCTCGCTGACAACTCTCACACAGATTCGGCTGCAGATACTCACAGGTCTCACTTACCTTGATGACCT  1472
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1473  GCTTCCCAAACTGTGGGCATTTATCTGTGAGCTCGGGCCCCACGGAGGGTTAAAGCTCTTCTTGGAATGCCTGA  1546
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1547  ACAATGACACTGAAGAGTCCAAGCAACTCTTGGCCATGCTGATGCTGTTCTGTGACTGTTCGCGGCACCTCATC  1620
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1621  ACAATCCTTGATGACATTGAAGTTTATGAAGAACAGATTTCATTCAAACTGGAAGAGCTGGTCACTATCTCCTC  1694
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1695  TTTCCTGAATTCTTTTGTGTTTAAGATGATCTGGGATGGAATTGTAGAGAACGCCAAGGGTGAGACCTTGGAGC  1768
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1769  TGTTCCAGTCTGTCCACGGGTGGCTTATGGTGCTGTACGAGCGGGACTGCCGGCGGCGCTTCACCCCCGAGGAC  1842
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1843  CACTGGCTGCGAAAGGATCTCAAACCTAGCGTGCTCTTCCAAGAACTCGACAGGGACAGAAAACGGGCACAGTT  1916
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1917  GATCCTGCAGTACATCCCACATGTCATCCCTCACAAAAACAGAGTTCTACTGTTTCGAACCATGGTTACCAAGG  1990
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 1991  AGAAGGAGAAACTGGGGCTGGTGGAAACCAGCTCTGCCTCCCCGCATGTCACTCACATCACCATCCGCCGGTCC  2064
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2065  AGGATGCTGGAGGACGGCTACGAGCAGCTTAGGCAGCTCTCCCAGCACGCCATGAAGGGGGTCATCCGTGTGAA  2138
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2139  GTTTGTCAATGACCTCGGGGTGGACGAAGCAGGGATTGATCAAGACGGTGTTTTTAAGGAGTTCTTGGAAGAGA  2212
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2213  TCATCAAGAGAGTTTTTGACCCAGCACTCAATCTGTTCAAGACAACCAGTGGGGATGAGAGGCTGTACCCCTCA  2286
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2287  CCCACATCCTACATCCATGAGAATTACCTGCAGCTCTTCGAGTTTGTGGGGAAGATGCTGGGGAAGGCTGTGTA  2360
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2361  TGAGGGAATTGTGGTGGACGTGCCATTTGCATCCTTCTTCCTGAGCCAACTGCTTGGGCACCACCACAGCGTCT  2434
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2435  TCTATAGCTCGGTGGATGAACTGCCTTCTCTGGACTCCGAGTTCTATAAAAACCTCACCTCCATCAAGCGCTAT  2508
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2509  GATGGGGACATCACTGACCTGGGCCTGACGCTGTCTTACGACGAGGACGTCATGGGTCAGCTTGTTTGCCATGA  2582
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2583  ACTGATTCCTGGAGGGAAGACCATTCCTGTTACAAATGAAAATAAAATTAGCTACATCCATCTGATGGCACATT  2656
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2657  TTCGAATGCACACTCAAATAAAAAACCAAACAGCTGCCCTCATTAGCGGATTCCGTTCCATTATCAAACCCGAG  2730
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2731  TGGATCCGAATGTTCTCAACTCCTGAACTGCAGCGTCTCATCTCTGGCGACAATGCTGAGATTGATCTGGAAGA  2804
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2805  TTTAAAGAAGCACACAGTCTACTACGGTGGTTTCCATGGAAGTCACAGAGTCATCATCTGGCTCTGGGATATTC  2878
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2879  TGGCCTCCGACTTCACACCGGATGAGAGAGCTATGTTTCTGAAGTTCGTGACCAGCTGCTCCAGACCCCCGCTC  2952
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 2953  CTGGGATTCGCCTACCTCAAGCCTCCATTCTCCATCCGCTGCGTGGAGGTGTCGGACGATCAGGACACCGGGGA  3026
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 3027  CACTCTGGGCAGCGTCCTCCGGGGCTTCTTCACCATCCGCAAGCGGGAGCCAGGCGGCCGCCTGCCCACCTCCT  3100
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 3101  CCACCTGCTTCAACCTGCTCAAGCTGCCCAACTACAGCAAGAAGAGCGTCCTCCGCGAGAAGCTGCGCTACGCC  3174
                                                                                      
Sbjct  733  --------------------------------------------------------------------------  732

Query 3175  ATCAGCATGAACACGGGCTTTGAACTCTCC  3204
                                          
Sbjct  733  ------------------------------  732

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