Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09321
Subject:
XM_017027466.1
Aligned Length:
3186
Identities:
2766
Gaps:
420

Alignment

Query    1  ATGCTACGAACCGCAGGCAGGGACGGCCTCTGTCGCCTGTCCACCTACTTGGAAGAACTCGAGGCTGTGGAACT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAAGAAGTTCAAGTTATACCTGGGGACCGCGACAGAGCTGGGAGAAGGCAAGATCCCCTGGGGAAGCATGGAGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGGCCGGTCCCCTGGAAATGGCCCAGCTGCTCATCACCCACTTCGGGCCAGAGGAGGCCTGGAGGTTGGCTCTC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AGCACCTTTGAGCGGATAAACAGGAAGGACCTGTGGGAGAGAGGACAGAGAGAGGACCTGGTGAGGGATACCCC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ACCTGGTGGCCCGTCCTCACTTGGGAACCAGTCAACATGCCTTCTGGAAGTCTCTCTTGTCACTCCAAGAAAAG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ATCCCCAGGAAACCTACAGGGACTATGTCCGCAGGAAATTCCGGCTCATGGAAGACCGCAATGCGCGCCTAGGG  444
                                                           |||||||||||||||||||||||||||
Sbjct    1  -----------------------------------------------ATGGAAGACCGCAATGCGCGCCTAGGG  27

Query  445  GAATGTGTCAACCTCAGCCACCGGTACACCCGGCTCCTGCTGGTGAAGGAGCACTCAAACCCCATGCAGGTCCA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   28  GAATGTGTCAACCTCAGCCACCGGTACACCCGGCTCCTGCTGGTGAAGGAGCACTCAAACCCCATGCAGGTCCA  101

Query  519  GCAGCAGCTTCTGGACACAGGCCGGGGACACGCGAGGACCGTGGGACACCAGGCTAGCCCCATCAAGATAGAGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  102  GCAGCAGCTTCTGGACACAGGCCGGGGACACGCGAGGACCGTGGGACACCAGGCTAGCCCCATCAAGATAGAGA  175

Query  593  CCCTCTTTGAGCCAGACGAGGAGCGCCCCGAGCCACCGCGCACCGTGGTCATGCAAGGCGCGGCAGGGATAGGC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  CCCTCTTTGAGCCAGACGAGGAGCGCCCCGAGCCACCGCGCACCGTGGTCATGCAAGGCGCGGCAGGGATAGGC  249

Query  667  AAGTCCATGCTGGCACACAAGGTGATGCTGGACTGGGCGGACGGGAAGCTCTTCCAAGGCAGATTTGATTATCT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  250  AAGTCCATGCTGGCACACAAGGTGATGCTGGACTGGGCGGACGGGAAGCTCTTCCAAGGCAGATTTGATTATCT  323

Query  741  CTTCTACATCAACTGCAGGGAGATGAACCAGAGTGCCACGGAATGCAGCATGCAAGACCTCATCTTCAGCTGCT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  CTTCTACATCAACTGCAGGGAGATGAACCAGAGTGCCACGGAATGCAGCATGCAAGACCTCATCTTCAGCTGCT  397

Query  815  GGCCTGAGCCCAGCGCGCCTCTCCAGGAGCTCATCCGAGTTCCCGAGCGCCTCCTTTTCATCATCGACGGCTTC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  398  GGCCTGAGCCCAGCGCGCCTCTCCAGGAGCTCATCCGAGTTCCCGAGCGCCTCCTTTTCATCATCGACGGCTTC  471

Query  889  GATGAGCTCAAGCCTTCTTTCCACGATCCTCAGGGACCCTGGTGCCTCTGCTGGGAGGAGAAACGGCCCACGGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  GATGAGCTCAAGCCTTCTTTCCACGATCCTCAGGGACCCTGGTGCCTCTGCTGGGAGGAGAAACGGCCCACGGA  545

Query  963  GCTGCTTCTTAACAGCTTAATTCGGAAGAAGCTGCTCCCTGAGCTATCTTTGCTCATCACCACACGGCCCACGG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  546  GCTGCTTCTTAACAGCTTAATTCGGAAGAAGCTGCTCCCTGAGCTATCTTTGCTCATCACCACACGGCCCACGG  619

Query 1037  CTTTGGAGAAGCTCCACCGTCTGCTGGAGCACCCCAGGCATGTGGAGATCCTGGGCTTCTCTGAGGCAGAAAGG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  620  CTTTGGAGAAGCTCCACCGTCTGCTGGAGCACCCCAGGCATGTGGAGATCCTGGGCTTCTCTGAGGCAGAAAGG  693

Query 1111  AAGGAATACTTCTACAAGTATTTCCACAATGCAGAGCAGGCGGGCCAAGTCTTCAATTACGTGAGGGACAACGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  694  AAGGAATACTTCTACAAGTATTTCCACAATGCAGAGCAGGCGGGCCAAGTCTTCAATTACGTGAGGGACAACGA  767

Query 1185  GCCTCTCTTCACCATGTGCTTCGTCCCCCTGGTGTGCTGGGTGGTGTGTACCTGCCTCCAGCAGCAGCTGGAGG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  768  GCCTCTCTTCACCATGTGCTTCGTCCCCCTGGTGTGCTGGGTGGTGTGTACCTGCCTCCAGCAGCAGCTGGAGG  841

Query 1259  GTGGGGGGCTGTTGAGACAGACGTCCAGGACCACCACTGCAGTGTACATGCTCTACCTGCTGAGTCTGATGCAA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  842  GTGGGGGGCTGTTGAGACAGACGTCCAGGACCACCACTGCAGTGTACATGCTCTACCTGCTGAGTCTGATGCAA  915

Query 1333  CCCAAGCCGGGGGCCCCGCGCCTCCAGCCCCCACCCAACCAGAGAGGGTTGTGCTCCTTGGCGGCAGATGGGCT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  916  CCCAAGCCGGGGGCCCCGCGCCTCCAGCCCCCACCCAACCAGAGAGGGTTGTGCTCCTTGGCGGCAGATGGGCT  989

Query 1407  CTGGAATCAGAAAATCCTATTTGAGGAGCAGGACCTCCGGAAGCACGGCCTAGACGGGGAAGACGTCTCTGCCT  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  990  CTGGAATCAGAAAATCCTATTTGAGGAGCAGGACCTCCGGAAGCACGGCCTAGACGGGGAAGACGTCTCTGCCT  1063

Query 1481  TCCTCAACATGAACATCTTCCAGAAGGACATCAACTGTGAGAGGTACTACAGCTTCATCCACTTGAGTTTCCAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064  TCCTCAACATGAACATCTTCCAGAAGGACATCAACTGTGAGAGGTACTACAGCTTCATCCACTTGAGTTTCCAG  1137

Query 1555  GAATTCTTTGCAGCTATGTACTATATCCTGGACGAGGGGGAGGGCGGGGCAGGCCCAGACCAGGACGTGACCAG  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138  GAATTCTTTGCAGCTATGTACTATATCCTGGACGAGGGGGAGGGCGGGGCAGGCCCAGACCAGGACGTGACCAG  1211

Query 1629  GCTGTTGACCGAGTACGCGTTTTCTGAAAGGAGCTTCCTGGCACTCACCAGCCGCTTCCTGTTTGGACTCCTGA  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212  GCTGTTGACCGAGTACGCGTTTTCTGAAAGGAGCTTCCTGGCACTCACCAGCCGCTTCCTGTTTGGACTCCTGA  1285

Query 1703  ACGAGGAGACCAGGAGCCACCTGGAGAAGAGTCTCTGCTGGAAGGTCTCGCCGCACATCAAGATGGACCTGTTG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286  ACGAGGAGACCAGGAGCCACCTGGAGAAGAGTCTCTGCTGGAAGGTCTCGCCGCACATCAAGATGGACCTGTTG  1359

Query 1777  CAGTGGATCCAAAGCAAAGCTCAGAGCGACGGCTCCACCCTGCAGCAGGGCTCCTTGGAGTTCTTCAGCTGCTT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360  CAGTGGATCCAAAGCAAAGCTCAGAGCGACGGCTCCACCCTGCAGCAGGGCTCCTTGGAGTTCTTCAGCTGCTT  1433

Query 1851  GTACGAGATCCAGGAGGAGGAGTTTATCCAGCAGGCCCTGAGCCACTTCCAGGTGATCGTGGTCAGCAACATTG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434  GTACGAGATCCAGGAGGAGGAGTTTATCCAGCAGGCCCTGAGCCACTTCCAGGTGATCGTGGTCAGCAACATTG  1507

Query 1925  CCTCCAAGATGGAGCACATGGTCTCCTCGTTCTGTCTGAAGCGCTGCAGGAGCGCCCAGGTGCTGCACTTGTAT  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508  CCTCCAAGATGGAGCACATGGTCTCCTCGTTCTGTCTGAAGCGCTGCAGGAGCGCCCAGGTGCTGCACTTGTAT  1581

Query 1999  GGCGCCACCTACAGCGCGGACGGGGAAGACCGCGCGAGGTGCTCCGCAGGAGCGCACACGCTGTTGGTGCAGCT  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582  GGCGCCACCTACAGCGCGGACGGGGAAGACCGCGCGAGGTGCTCCGCAGGAGCGCACACGCTGTTGGTGCAGCT  1655

Query 2073  ---ACCAGAGAGGACCGTTCTGCTGGACGCCTACAGTGAACATCTGGCAGCGGCCCTGTGCACCAATCCAAACC  2143
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656  CAGACCAGAGAGGACCGTTCTGCTGGACGCCTACAGTGAACATCTGGCAGCGGCCCTGTGCACCAATCCAAACC  1729

Query 2144  TGATAGAGCTGTCTCTGTACCGAAATGCCCTGGGCAGCCGGGGGGTGAAGCTGCTCTGTCAAGGACTCAGACAC  2217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730  TGATAGAGCTGTCTCTGTACCGAAATGCCCTGGGCAGCCGGGGGGTGAAGCTGCTCTGTCAAGGACTCAGACAC  1803

Query 2218  CCCAACTGCAAACTTCAGAACCTGAGGCTGAAGAGGTGCCGCATCTCCAGCTCAGCCTGCGAGGACCTCTCTGC  2291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804  CCCAACTGCAAACTTCAGAACCTGAGGCTGAAGAGGTGCCGCATCTCCAGCTCAGCCTGCGAGGACCTCTCTGC  1877

Query 2292  AGCTCTCATAGCCAATAAGAATTTGACAAGGATGGATCTCAGTGGCAACGGCGTTGGATTCCCAGGCATGATGC  2365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878  AGCTCTCATAGCCAATAAGAATTTGACAAGGATGGATCTCAGTGGCAACGGCGTTGGATTCCCAGGCATGATGC  1951

Query 2366  TGCTTTGCGAGGGCCTGCGGCATCCCCAGTGCAGGCTGCAGATGATTCAGTTGAGGAAGTGTCAGCTGGAGTCC  2439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952  TGCTTTGCGAGGGCCTGCGGCATCCCCAGTGCAGGCTGCAGATGATTCAGTTGAGGAAGTGTCAGCTGGAGTCC  2025

Query 2440  GGGGCTTGTCAGGAGATGGCTTCTGTGCTCGGCACCAACCCACATCTGGTTGAGTTGGACCTGACAGGAAATGC  2513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026  GGGGCTTGTCAGGAGATGGCTTCTGTGCTCGGCACCAACCCACATCTGGTTGAGTTGGACCTGACAGGAAATGC  2099

Query 2514  ACTGGAGGATTTGGGCCTGAGGTTACTATGCCAGGGACTGAGGCACCCAGTCTGCAGACTACGGACTTTGTGGC  2587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100  ACTGGAGGATTTGGGCCTGAGGTTACTATGCCAGGGACTGAGGCACCCAGTCTGCAGACTACGGACTTTGTGGC  2173

Query 2588  TGAAGATCTGCCGCCTCACTGCTGCTGCCTGTGACGAGCTGGCCTCAACTCTCAGTGTGAACCAGAGCCTGAGA  2661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2174  TGAAGATCTGCCGCCTCACTGCTGCTGCCTGTGACGAGCTGGCCTCAACTCTCAGTGTGAACCAGAGCCTGAGA  2247

Query 2662  GAGCTGGACCTGAGCCTGAATGAGCTGGGGGACCTCGGGGTGCTGCTGCTGTGTGAGGGCCTCAGGCATCCCAC  2735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248  GAGCTGGACCTGAGCCTGAATGAGCTGGGGGACCTCGGGGTGCTGCTGCTGTGTGAGGGCCTCAGGCATCCCAC  2321

Query 2736  GTGCAAGCTCCAGACCCTGCGGTTGGGCATCTGCCGGCTGGGCTCTGCCGCCTGTGAGGGTCTTTCTGTGGTGC  2809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2322  GTGCAAGCTCCAGACCCTGCGGTTGGGCATCTGCCGGCTGGGCTCTGCCGCCTGTGAGGGTCTTTCTGTGGTGC  2395

Query 2810  TCCAGGCCAACCACAACCTCCGGGAGCTGGACTTGAGTTTCAACGACCTGGGAGACTGGGGCCTGTGGTTGCTG  2883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396  TCCAGGCCAACCACAACCTCCGGGAGCTGGACTTGAGTTTCAACGACCTGGGAGACTGGGGCCTGTGGTTGCTG  2469

Query 2884  GCTGAGGGGCTGCAACATCCCGCCTGCAGACTCCAGAAACTGTGGCTGGATAGCTGTGGCCTCACAGCCAAGGC  2957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2470  GCTGAGGGGCTGCAACATCCCGCCTGCAGACTCCAGAAACTGTGGCTGGATAGCTGTGGCCTCACAGCCAAGGC  2543

Query 2958  TTGTGAGAATCTTTACTTCACCCTGGGGATCAACCAGACCTTGACCGACCTTTACCTGACCAACAACGCCCTAG  3031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2544  TTGTGAGAATCTTTACTTCACCCTGGGGATCAACCAGACCTTGACCGACCTTTACCTGACCAACAACGCCCTAG  2617

Query 3032  GGGACACAGGTGTCCGACTGCTTTGCAAGCGGCTGAGCCATCCTGGCTGCAAACTCCGAGTCCTCTGGTTATTT  3105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2618  GGGACACAGGTGTCCGACTGCTTTGCAAGCGGCTGAGCCATCCTGGCTGCAAACTCCGAGTCCTCTGGTTATTT  2691

Query 3106  GGGATGGACCTGAATAAAATGACCCACAGTAGGTTGGCAGCGCTTCGAGTAACAAAACCTTATTTGGACATTGG  3179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2692  GGGATGGACCTGAATAAAATGACCCACAGTAGGTTGGCAGCGCTTCGAGTAACAAAACCTTATTTGGACATTGG  2765

Query 3180  CTGC  3183
            ||||
Sbjct 2766  CTGC  2769

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