Construct: ORF ccsbBroadEn_09321

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010926.1_s300c1, BRDN0000393347
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NLRP12 (91662)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91662 NLRP12 NLR family pyrin domain con... NM_144687.4 100% 100%
2 human 91662 NLRP12 NLR family pyrin domain con... NM_001277126.2 99.9% 99.9% 2073_2075delCAG
3 human 91662 NLRP12 NLR family pyrin domain con... XM_017027460.1 99.8% 99.8% 2073_2075delCAG;2927_2928insGTG
4 human 91662 NLRP12 NLR family pyrin domain con... XM_017027462.1 94.6% 94.6% 2072_2073ins171
5 human 91662 NLRP12 NLR family pyrin domain con... NM_001277129.1 94.5% 94.6% 2394A>G;2755_2756ins171
6 human 91662 NLRP12 NLR family pyrin domain con... XM_011527479.1 94.5% 94.5% 2073_2075delCAG;2417_2418ins171
7 human 91662 NLRP12 NLR family pyrin domain con... XM_011527480.1 94.5% 94.5% 2073_2075delCAG;2758_2759ins171
8 human 91662 NLRP12 NLR family pyrin domain con... XM_017027461.1 94.5% 94.5% 2073_2075delCAG;2928_2929ins171
9 human 91662 NLRP12 NLR family pyrin domain con... XM_011527482.1 89.1% 89.1% 2073_2075delCAG;2584_2585ins342
10 human 91662 NLRP12 NLR family pyrin domain con... XM_017027463.1 86.8% 86.8% 0_1ins417;1656_1658delCAG
11 human 91662 NLRP12 NLR family pyrin domain con... XM_017027464.1 86.8% 86.8% 0_1ins417;1656_1658delCAG
12 human 91662 NLRP12 NLR family pyrin domain con... XM_017027465.1 86.8% 86.8% 0_1ins417;1656_1658delCAG
13 human 91662 NLRP12 NLR family pyrin domain con... XM_017027466.1 86.8% 86.8% 0_1ins417;1656_1658delCAG
14 human 91662 NLRP12 NLR family pyrin domain con... XM_017027467.1 86.8% 86.8% 0_1ins417;1656_1658delCAG
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3249
ORF length:
3183
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT ACGAACCGCA GGCAGGGACG GCCTCTGTCG CCTGTCCACC TACTTGGAAG
121AACTCGAGGC TGTGGAACTG AAGAAGTTCA AGTTATACCT GGGGACCGCG ACAGAGCTGG
181GAGAAGGCAA GATCCCCTGG GGAAGCATGG AGAAGGCCGG TCCCCTGGAA ATGGCCCAGC
241TGCTCATCAC CCACTTCGGG CCAGAGGAGG CCTGGAGGTT GGCTCTCAGC ACCTTTGAGC
301GGATAAACAG GAAGGACCTG TGGGAGAGAG GACAGAGAGA GGACCTGGTG AGGGATACCC
361CACCTGGTGG CCCGTCCTCA CTTGGGAACC AGTCAACATG CCTTCTGGAA GTCTCTCTTG
421TCACTCCAAG AAAAGATCCC CAGGAAACCT ACAGGGACTA TGTCCGCAGG AAATTCCGGC
481TCATGGAAGA CCGCAATGCG CGCCTAGGGG AATGTGTCAA CCTCAGCCAC CGGTACACCC
541GGCTCCTGCT GGTGAAGGAG CACTCAAACC CCATGCAGGT CCAGCAGCAG CTTCTGGACA
601CAGGCCGGGG ACACGCGAGG ACCGTGGGAC ACCAGGCTAG CCCCATCAAG ATAGAGACCC
661TCTTTGAGCC AGACGAGGAG CGCCCCGAGC CACCGCGCAC CGTGGTCATG CAAGGCGCGG
721CAGGGATAGG CAAGTCCATG CTGGCACACA AGGTGATGCT GGACTGGGCG GACGGGAAGC
781TCTTCCAAGG CAGATTTGAT TATCTCTTCT ACATCAACTG CAGGGAGATG AACCAGAGTG
841CCACGGAATG CAGCATGCAA GACCTCATCT TCAGCTGCTG GCCTGAGCCC AGCGCGCCTC
901TCCAGGAGCT CATCCGAGTT CCCGAGCGCC TCCTTTTCAT CATCGACGGC TTCGATGAGC
961TCAAGCCTTC TTTCCACGAT CCTCAGGGAC CCTGGTGCCT CTGCTGGGAG GAGAAACGGC
1021CCACGGAGCT GCTTCTTAAC AGCTTAATTC GGAAGAAGCT GCTCCCTGAG CTATCTTTGC
1081TCATCACCAC ACGGCCCACG GCTTTGGAGA AGCTCCACCG TCTGCTGGAG CACCCCAGGC
1141ATGTGGAGAT CCTGGGCTTC TCTGAGGCAG AAAGGAAGGA ATACTTCTAC AAGTATTTCC
1201ACAATGCAGA GCAGGCGGGC CAAGTCTTCA ATTACGTGAG GGACAACGAG CCTCTCTTCA
1261CCATGTGCTT CGTCCCCCTG GTGTGCTGGG TGGTGTGTAC CTGCCTCCAG CAGCAGCTGG
1321AGGGTGGGGG GCTGTTGAGA CAGACGTCCA GGACCACCAC TGCAGTGTAC ATGCTCTACC
1381TGCTGAGTCT GATGCAACCC AAGCCGGGGG CCCCGCGCCT CCAGCCCCCA CCCAACCAGA
1441GAGGGTTGTG CTCCTTGGCG GCAGATGGGC TCTGGAATCA GAAAATCCTA TTTGAGGAGC
1501AGGACCTCCG GAAGCACGGC CTAGACGGGG AAGACGTCTC TGCCTTCCTC AACATGAACA
1561TCTTCCAGAA GGACATCAAC TGTGAGAGGT ACTACAGCTT CATCCACTTG AGTTTCCAGG
1621AATTCTTTGC AGCTATGTAC TATATCCTGG ACGAGGGGGA GGGCGGGGCA GGCCCAGACC
1681AGGACGTGAC CAGGCTGTTG ACCGAGTACG CGTTTTCTGA AAGGAGCTTC CTGGCACTCA
1741CCAGCCGCTT CCTGTTTGGA CTCCTGAACG AGGAGACCAG GAGCCACCTG GAGAAGAGTC
1801TCTGCTGGAA GGTCTCGCCG CACATCAAGA TGGACCTGTT GCAGTGGATC CAAAGCAAAG
1861CTCAGAGCGA CGGCTCCACC CTGCAGCAGG GCTCCTTGGA GTTCTTCAGC TGCTTGTACG
1921AGATCCAGGA GGAGGAGTTT ATCCAGCAGG CCCTGAGCCA CTTCCAGGTG ATCGTGGTCA
1981GCAACATTGC CTCCAAGATG GAGCACATGG TCTCCTCGTT CTGTCTGAAG CGCTGCAGGA
2041GCGCCCAGGT GCTGCACTTG TATGGCGCCA CCTACAGCGC GGACGGGGAA GACCGCGCGA
2101GGTGCTCCGC AGGAGCGCAC ACGCTGTTGG TGCAGCTACC AGAGAGGACC GTTCTGCTGG
2161ACGCCTACAG TGAACATCTG GCAGCGGCCC TGTGCACCAA TCCAAACCTG ATAGAGCTGT
2221CTCTGTACCG AAATGCCCTG GGCAGCCGGG GGGTGAAGCT GCTCTGTCAA GGACTCAGAC
2281ACCCCAACTG CAAACTTCAG AACCTGAGGC TGAAGAGGTG CCGCATCTCC AGCTCAGCCT
2341GCGAGGACCT CTCTGCAGCT CTCATAGCCA ATAAGAATTT GACAAGGATG GATCTCAGTG
2401GCAACGGCGT TGGATTCCCA GGCATGATGC TGCTTTGCGA GGGCCTGCGG CATCCCCAGT
2461GCAGGCTGCA GATGATTCAG TTGAGGAAGT GTCAGCTGGA GTCCGGGGCT TGTCAGGAGA
2521TGGCTTCTGT GCTCGGCACC AACCCACATC TGGTTGAGTT GGACCTGACA GGAAATGCAC
2581TGGAGGATTT GGGCCTGAGG TTACTATGCC AGGGACTGAG GCACCCAGTC TGCAGACTAC
2641GGACTTTGTG GCTGAAGATC TGCCGCCTCA CTGCTGCTGC CTGTGACGAG CTGGCCTCAA
2701CTCTCAGTGT GAACCAGAGC CTGAGAGAGC TGGACCTGAG CCTGAATGAG CTGGGGGACC
2761TCGGGGTGCT GCTGCTGTGT GAGGGCCTCA GGCATCCCAC GTGCAAGCTC CAGACCCTGC
2821GGTTGGGCAT CTGCCGGCTG GGCTCTGCCG CCTGTGAGGG TCTTTCTGTG GTGCTCCAGG
2881CCAACCACAA CCTCCGGGAG CTGGACTTGA GTTTCAACGA CCTGGGAGAC TGGGGCCTGT
2941GGTTGCTGGC TGAGGGGCTG CAACATCCCG CCTGCAGACT CCAGAAACTG TGGCTGGATA
3001GCTGTGGCCT CACAGCCAAG GCTTGTGAGA ATCTTTACTT CACCCTGGGG ATCAACCAGA
3061CCTTGACCGA CCTTTACCTG ACCAACAACG CCCTAGGGGA CACAGGTGTC CGACTGCTTT
3121GCAAGCGGCT GAGCCATCCT GGCTGCAAAC TCCGAGTCCT CTGGTTATTT GGGATGGACC
3181TGAATAAAAT GACCCACAGT AGGTTGGCAG CGCTTCGAGT AACAAAACCT TATTTGGACA
3241TTGGCTGCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
3301tttgttgcaa cgaac

Download FASTA (ORF) (Full)