Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09677
- Subject:
- NR_148059.1
- Aligned Length:
- 3111
- Identities:
- 914
- Gaps:
- 2180
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATCGCACATTTTTAACTATCACCATTATTTTAATTTAGAGATGGGCACTTAGGAGTTAAAGGATGTTTGATTTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCTTTAATGGACATCTATGTCAAATATATGGAATTATTTTTGTTATAATTGTCATAGTCTCCAGTGATTTCAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGTCTATAGCGAAGTCCCAGGAACCTACAGCTATTTTGATTTATGCAGCCTTTATAAGTCCTCGTAATATAGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTACTGATTTCTTCCCTGTATCCTGCTCATTGTTGAAAAGCCAGAGCTATTTTTAACATTTACACAATTTCAAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGATGATTCTTTATTCCACAAGGTTTGGTGCTAAATCTGTGGAGACTTTCATAATCACATCCTTCTTGTGGTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCTTGAATTTGATCACAGTGGCTGATTTCATGCATTGATAATGAAGGCTTAGGTTGCCTGTTTCTCAGCATAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCCACCTCAGACTTGTACATTGACAGTGCTTCTGGTTTCAGCACACATGGAGATATAGAATTGAAATTGCTCTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTTCTTTACAAATGACTCAGAGTGTGCTTGTCCTTCCCTAAAATGTTGCCAGCATGTAAAGGATTTTCAATGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGTGCAATAAGCCAGCAACTGGGAAGGCTTGGAGCGGCACTGATATAACGTGGTGCTGTCACACAGATAATC 666
Query 1 --------------------------ATGATGC---ATCCT--TC----ACTGGA---------TATCAAACCA 30
.|| ||| ||||| || |||||| ||||.|||
Sbjct 667 AGGGCTGGAGCCAAGTCTCGGTAGCGCTG-TGCATTATCCTGGTCACATACTGGAAGTTTTGTTTATCCAAC-- 737
Query 31 TTTATGTCTTTTCCAG-TGGACAGTAGTTCTGC-----TGT----TGGGCTCTTTCCAAATTTTAACACA-ATG 93
||..|..||.||..|| |||..|| ||..|||| ||| |||.| |||| ||.||.| |||
Sbjct 738 TTGGTTGCTCTTGAAGCTGGTGAG-AGCCCTGCCAGGATGTGGAGTGGAC---TTCC------TAGCAGAGATG 801
Query 94 GATCCTGTGCAAAAAGCGGTTATTAACCATACATTTGGAGTATCCATTCCCCCAAAGAAGAAACAAGTTATTTC 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GATCCTGTGCAAAAAGCGGTTATTAACCATACATTTGGAGTATCCATTCCCCCAAAGAAGAAACAAGTTATTTC 875
Query 168 TTGTAATGTCTGTCAGCTTCGCTTTAACTCAGATAGCCAGGCCGAGGCCCACTACAAAGGAAGTAAACATGCCA 241
||||||||||||||||||||||||||||||||||
Sbjct 876 TTGTAATGTCTGTCAGCTTCGCTTTAACTCAGAT---------------------------------------- 909
Query 242 AGAAGGTCAAAGCACTAGACGCAACGAAAAATAAACCCAAAATGGTTCCTTCCAAGGACAGCGCAAAGGCTAAT 315
Sbjct 910 -------------------------------------------------------------------------- 909
Query 316 CCCAGCTGCTCCATCACTCCAATCACAGGCAACAACTCTGACAAATCAGAAGATAAAGGGAAGTTAAAAGCCAG 389
|||||||||||||||||||||||||
Sbjct 910 -------------------------------------------------AAGATAAAGGGAAGTTAAAAGCCAG 934
Query 390 CAGTTCCAGTCAGCCATCAAGCTCTGAAAGTGGCTCATTTATCCTCAAATCTGGCACAACACCCCTGCCACCTG 463
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 935 CAGTTCCAGTCAGCCATCAAGCTCTGAAAGTGGCTCATTTCTCCTCAAATCTGGCACAACACCCCTGCCACCTG 1008
Query 464 GAGCAGCCACTTCTCCCTCCAAGAGCACAAATGGAGCTCCCGGTACTGTTGTTGAATCAGAAGAAGAAAAAGCC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GAGCAGCCACTTCTCCCTCCAAGAGCACAAATGGAGCTCCCGGTACTGTTGTTGAATCAGAAGAAGAAAAAGCC 1082
Query 538 AAAAAATTACTTTATTGTTCACTATGCAAAGTGGCTGTGAACTCCCTGTCACAGCTAGAGGCACACAACACAGG 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AAAAAATTACTTTATTGTTCACTATGCAAAGTGGCTGTGAACTCCCTGTCACAGCTAGAGGCACACAACACAGG 1156
Query 612 ATCTAAACACAAGACCATGGTTGAAGCTCGTAATGGGGCTGGTCCAATTAAATCCTATCCTAGACCTGGATCAA 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 ATCTAAACACAAGACCATGGTTGAAGCTCGTAATGGGGCTGGTCCAATTAAATCCTATCCTAGACCTGGATCAA 1230
Query 686 GATTAAAGATGCAGAATGGCAGTAAGGGGTCAGGACTACAGAACAAGACATTTCATTGTGAAATCTGTGATGTT 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GATTAAAGATGCAGAATGGCAGTAAGGGGTCAGGACTACAGAACAAGACATTTCATTGTGAAATCTGTGATGTT 1304
Query 760 CATGTTAATTCAGAAATTCAACTCAAACAGCACATTTCTAGCCGAAGGCATAAAGATCGAGTTGCAGGGAAACC 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 CATGTTAATTCAGAAATTCAACTCAAACAGCACATTTCTAGCCGAAGGCATAAAGATCGAGTTGCAGGGAAACC 1378
Query 834 ACTGAAGCCAAAATACAGCCCTTACAACAAACTCCAGCGGAGCCCGAGTATTCTAGCAGCAAAACTTGCATTCC 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACTGAAGCCAAAATACAGCCCTTACAACAAACTCCAGCGGAGCCCGAGTATTCTAGCAGCAAAACTTGCATTCC 1452
Query 908 AGAAAGATATGATGAAGCCTTTGGCCCCAGCCTTCCTGTCCTCACCTCTCGCAGCGGCGGCAGCCGTGTCCTCA 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 AGAAAGATATGATGAAGCCTTTGGCCCCAGCCTTCCTGTCCTCACCTCTCGCAGCGGCGGCAGCCGTGTCCTCA 1526
Query 982 GCGCTGTCACTCCCACCCCGGCCCTCTGCCTCGCTCTTCCAGGCTCCAGCCATTCCTCCAGCTCTTCTGAGGCC 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 GCGCTGTCACTCCCACCCCGGCCCTCTGCCTCGCTCTTCCAGGCTCCAGCCATTCCTCCAGCTCTTCTGAGGCC 1600
Query 1056 TGGGCATGGGCCCATCCGCGCCACTCCTGCCTCCATCCTCTTTGCTCCGTAC---------------------- 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 TGGGCATGGGCCCATCCGCGCCACTCCTGCCTCCATCCTCTTTGCTCCGTACTAACGTCTGCAAACCCCAAGAC 1674
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 1675 GTTTGAGGCCAGTAGGAAGTTGAGAAAGAAAGCCACAAGGATTCAGCAATTTAAGCAGTTTGTGTTGCAGTACC 1748
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 1749 CCCCATTCACCCACAAAATGCAGCCCACCACCCAGTCCCCCAATTCCAGAGAGAAACACATCACTAGATTGACG 1822
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 1823 AGGGCTTTTAGAGACTGCTCCTATAATTGAGGAATCAGCAGCATAGGCTTTATCTCCCTACTTCCTCCCCCACC 1896
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 1897 CTACCGCGTTCAATTTGTGTATCTCAGATATTTGATTTCTTGAGCATGTATTGGTCAGAAAGAAAAAGAAAGAA 1970
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 1971 AACCATTCTCTATTTTTCCATGGGTATGATCTGGCTTAAAACAATATGGAATATTTTCCTGACAGACTTGAAAA 2044
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2045 CTAGGATCTTCCTCAGATGTCTGTAAATAACTCTGGTATCCAACTGGGTGTATTCTAGTGTGGAACAAAAAACA 2118
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2119 GTGAACACAAGTGCTTACTTGTGGATACTATCTTACCAACGGATCACAAAGTTCTCTTTTTGGTGTACTGTTGT 2192
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2193 TGACAGGGATTGTGTACTGTTTCGACCCAAGTACTGCTGTATCCTGTGTAGTACTAGATCTGTATCTCTTGTCT 2266
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2267 GAATTAAACATTTTTAGTTGCTGTGTAAATGTTAGGAAGCAAAGTAGCTTTGAATTTTCTCTGTAAGAGAATAA 2340
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2341 AAGATAAAATAATGTATTTTCTTTATTTCACATTTTATTTGGAGATATTTAAATGAAATAGAAAGCCATATAAC 2414
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2415 ATAGCTATAATTACTACCTGTTTGCTATTTTTGTTTAACTTATTTTGTAGCTTCCTCACTGGTTTGTGTTGCTA 2488
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2489 AGCAAACGTATACAAACAGAAAAAGAGCTTCCTAAATTGCACATTTTTGCACCTCTTGTGCATTCTGCAAGAAG 2562
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2563 ACAATGAATCCATGTATTTCTATATAAGTATCTTCTTCATTTTTAACCTGTTTTCATTTGTAATGATGCTACAT 2636
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2637 AATTTTGTGGCTCCCTAATGCAATAATGTACAGAAGATAAAAAAATTTATAATTGAACAATTTGTCTTTCTGTT 2710
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2711 CGCTGAATATATTGCAGGTCATGCTCCCATGCCCCCCTTTCTAAGCCGATATCAACAAGACTGGAATGTTTGTG 2784
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2785 ATATCAGGGGCAAGAGTTATCATAGAACAACAAAATAGAGTGGACTCTTTTAGAGCATCTATATCTGCAACCTG 2858
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2859 TAAATGGTAAAATGTCTGTGTATTTTTTTAAATGTACCTTTTCAATAAAAGTACAAAAAATAAAAAAAAAAAAA 2932
Query 1108 --- 1107
Sbjct 2933 AAA 2935
