Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09680
- Subject:
- NM_001168221.2
- Aligned Length:
- 5485
- Identities:
- 1787
- Gaps:
- 3641
Alignment
Query 1 ATGGAGCCACCCCAAGAGACAAATAGGCCTTTCAGCACACTTGATAACCGCAGCGGGCAGGTCCAAGTCCTGTC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGCCACCCCAAGAGACAAATAGGCCTTTCAGCACACTTGATAACCGCAGCGGGCAGGTCCAAGTCCTGTC 74
Query 75 CGCCACCCCGCTATTGCAGAGGAATCCCTACAGCAGCCCGGATATCATGCACATTAAAGGGTCGGAGGCTTCTT 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGCCACCCCGCTATTGCAGAGGAATCCCTACAGCAGCCCGGATATCATGCACATTAAAGGGTCGGAGGCTTCTT 148
Query 149 CGGTCCCTTACGCCCTGAACCAGGGCACGACGGCCCTGCCTAAGAACAAGAACCAGGAGGGCACCGGGCACCGG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGGTCCCTTACGCCCTGAACCAGGGCACGACGGCCCTGCCTAAGAACAAGAACCAGGAGGGCACCGGGCACCGG 222
Query 223 CTGCTGAACATGCTGAGAAAAACTCTTAAAGAGTCTGATAGTGAAGAACTGGAAATAACACAGGAGACACCAAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 223 CTGCTGAACATGCTGAGAAAAACTCTTAAAGAGTCTGATAGTGAAGAACTGGAAATAACACAGGAGACGCCAAA 296
Query 297 TTTGGTGCCATTTGGGGATGTGGTTGGCTGCCTGGGCATTCATATAAAGAACTGCAGACATTTTATGCCTAAGA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTTGGTGCCATTTGGGGATGTGGTTGGCTGCCTGGGCATTCATATAAAGAACTGCAGACATTTTATGCCTAAGA 370
Query 371 TCAGTTTACAACATTATGCTAATTTATTCATTCGCATCTCTATAAACAAAGCTGTGAAATGTACAAAAATGTGT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCAGTTTACAACATTATGCTAATTTATTCATTCGCATCTCTATAAACAAAGCTGTGAAATGTACAAAAATGTGT 444
Query 445 AGCTTGCTATCCAAAAACGATGAGAAGAACACTGTAATTAAGTTCGATGAAGTGAAGTATTTTTCTGTACAGGT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGCTTGCTATCCAAAAACGATGAGAAGAACACTGTAATTAAGTTCGATGAAGTGAAGTATTTTTCTGTACAGGT 518
Query 519 TCCCAGACGTTATGATGATAAGCGGAATAATATTTTATTGGAACTCATACAATATGACAATAGAGAAAAACGTG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCCCAGACGTTATGATGATAAGCGGAATAATATTTTATTGGAACTCATACAATATGACAATAGAGAAAAACGTG 592
Query 593 CTTTCTTGTTAGGGAGTGTTCAGATACATCTTTATGAGGTAATTCAGAAAGGGTGCTTCATTGAAGAGGTCCAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTTCTTGTTAGGGAGTGTTCAGATACATCTTTATGAGGTAATTCAGAAAGGGTGCTTCATTGAAGAGGTCCAA 666
Query 667 GTGTTGCATGGAAACATATTTGTCTGCAGGCTGGAGGTGGAATTTATGTTCTCCTATGGAAACTTTGGTTATGG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTGTTGCATGGAAACATATTTGTCTGCAGGCTGGAGGTGGAATTTATGTTCTCCTATGGAAACTTTGGTTATGG 740
Query 741 ATTTTCACATCAGTTAAAACCTCTTCAGAAAATTACTGAGCCATCCATGTTTATGAATCTTGCACCACCTCCAG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATTTTCACATCAGTTAAAACCTCTTCAGAAAATTACTGAGCCATCCATGTTTATGAATCTTGCACCACCTCCAG 814
Query 815 AAAGAACAGATCCCGTGACAAAAGTTATTACACCACAGACAGTAGAATATCCAGCATTCTTATCCCCAGACCTG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAAGAACAGATCCCGTGACAAAAGTTATTACACCACAGACAGTAGAATATCCAGCATTCTTATCCCCAGACCTG 888
Query 889 AATGTTACTGTTGGGACTCCAGCTGTGCAATCCTCCAACCAGCCATCTGTAGTGCGACTTGAAAAACTTCAGCA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AATGTTACTGTTGGGACTCCAGCTGTGCAATCCTCCAACCAGCCATCTGTAGTGCGACTTGAAAAACTTCAGCA 962
Query 963 ACAACCCCGGGAAAGGCTGGAAAAGATGAAAAAAGAATATAGAAATCTGAATACATGGATAGATAAAGCTAACT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACAACCCCGGGAAAGGCTGGAAAAGATGAAAAAAGAATATAGAAATCTGAATACATGGATAGATAAAGCTAACT 1036
Query 1037 ATTTAGAAAGCATTCTAATGCCAAAATTGGAACATAAGGATTCTGAGGAAACTAATATAGATGAGGCATCTGAA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATTTAGAAAGCATTCTAATGCCAAAATTGGAACATAAGGATTCTGAGGAAACTAATATAGATGAGGCATCTGAA 1110
Query 1111 AACACGAAAAGTAATCAACCTGAAGAGGAGCTTGAAAATATTGTAGGAGTAGATATCCCTCTTGTAAATGAGGA 1184
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AACACGAAAAGTAATCATCCTGAAGAGGAGCTTGAAAATATTGTAGGAGTAGATATCCCTCTTGTAAATGAGGA 1184
Query 1185 AGCTGAAACTACTGCAAATGAGTTACTGGATAATGATTCTGAGAAAGGCCTGACTATACCAACTTTGAACCAAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGCTGAAACTACTGCAAATGAGTTACTGGATAATGATTCTGAGAAAGGCCTGACTATACCAACTTTGAACCAAT 1258
Query 1259 CGGACCAAGATAATTCAACTGCTGATGCTTCTAAAAATGATGAATCAACACCTTCACCCACAGAAGTGCACTCA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CGGACCAAGATAATTCAACTGCTGATGCTTCTAAAAATGATGAATCAACACCTTCACCCACAGAAGTGCACTCA 1332
Query 1333 TTGTGCACTATTTCTAACCAGGAAACAATAAAAGCAGGCAGAATACCACCTTTAGGTGAACGTCAATCAGAAAG 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTGTGCACTATTTCTAACCAGGAAACAATAAAAGCAGGCAGAATACCACCTTTAGGTGAACGTCAATCAGAAAG 1406
Query 1407 CATGCCAGACAGAAAAATGAAAAATGTATTTTTTCCATTAGAAGTAAAATTAAAAGATAACTATCCAAGCATTT 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CATGCCAGACAGAAAAATGAAAAATGTATTTTTTCCATTAGAAGTAAAATTAAAAGATAACTATCCAAGCATTT 1480
Query 1481 TAAAAGCAGACTCATCTCTATCAGAGGTGGCTTTTTCACCAAAAGAATATAATTCACCATCTTTCAGACCAGAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TAAAAGCAGACTCATCTCTATCAGAGGTGGCTTTTTCACCAAAAGAATATAATTCACCATCTTTCAGACCAGAA 1554
Query 1555 TATATAGAATTCAAACCAAAATTTCAGGATTGTTCAGA---TAAA----------TTTGA------------GG 1603
||||||||||||||||||||||||||| .|||||| |.|| ||||| |.
Sbjct 1555 TATATAGAATTCAAACCAAAATTTCAG----TTTCAGAAATTCAACAAGAACGGTTTTGATCCTTTTCTAAGGA 1624
Query 1604 ATTTACATGACATGACCTCATTTACACACCTTAAAAAAGTAAA-ATCAAGAT-----CAAGGCTTTTAGGAAAA 1671
||.||.|..|.||| |||.|.| .||||||.||| |||||||| ||| .|.|| ||||.
Sbjct 1625 ATATAAACAAAATG---TCAGTCA--------GAAAAAGAAAAGATCAAGATATATACAA---ATATA-GAAAT 1683
Query 1672 AGCTCAG------------------ATGA----------------TATCCATAACCATGCCAGACACT------ 1705
|.||.|| |||| ||||||..||.|| ||.|.|||
Sbjct 1684 ATCTTAGGTGCAGAGGTCATAGAGCATGAAGACCAGGATCCTCCTTATCCAGCACAAT--CAAAAACTGCAGGA 1755
Query 1706 -CTG-----------------CAAGACC---ATATACTGCTC-----------------CGGAG-----GTTA- 1735
||| ||.|||| |||| ||.|.| |.||| ||||
Sbjct 1756 CCTGCTAATACAACCTGGGCCCATGACCCTAATAT-CTTCACAACAAAGATGTTAGAAACTGAGAATAAGTTAG 1828
Query 1736 -----------ACAAGCA--ACGAGAA-------AGCTACAGTGGAAAGTTTA--------------------- 1768
||.|.|| ||.|.|| ||.||||..|.|.||||||
Sbjct 1829 CCCCTGATCCTACTATCAATACAATAAAGGGTTTAGATACAAAGAATAGTTTAAAAGAAAATCTACCAAATGTA 1902
Query 1769 -------CAAGTCGTCGAATG-GTTTCATCA--GGCT-----TAGTTCA------------------------- 1802
|||| |.||.||.| |..|||||| |||| | ||.||
Sbjct 1903 TCTTTACCAAG-CATCAAAGGAGAATCATCAAGGGCTGGAAAT-GTACAGGCAAACACATGTCACCTCTCGAAG 1974
Query 1803 --TATAAAT---------------GA-----TAAAAC-ATCA--GATTATGAAATGCAT--------AAAATGC 1843
|.||||| || |||||| |||| |||..|.||.|..|| ||||| |
Sbjct 1975 TCTTTAAATTTTACCCCCCATATAGAATATTTAAAACAATCAATGATACTCAAGTCAATTTTAAGTGAAAAT-C 2047
Query 1844 GGCCA--------AAAAAAATTA------AA---AGAGGATAT------------------------------- 1869
.||.| |.|.|||||| || |||.|.||.
Sbjct 2048 TGCAAGACCTTTCAGACAAATTATTTTCTAAACCAGAAGTTAGTATGAACAGTGAAGCAAGAGAGAAAAGTAGT 2121
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2122 TCTCCACTTCTAAGCATTCATGATAAATCATCAAGTAGTATGGAAGACAACGTATTGGAAAAAAAACAAGATTT 2195
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2196 AAACAACTGGCTTTCAGAAAAAGACATTTTAAATTCAAAGACTACTTTAAGTCAAATAATTAAAAATATTCCTG 2269
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2270 CAGATTCATTTTCAGAAGGTAGTCAAATAATTGAAAATATTCCTGCAGATTCACTTTTAGAAGGTGGTCAAGTA 2343
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2344 ATTAAAAATATTCCTGAATATTCACTTTCAGAAGGGGGTCAGATAATTAAAAATATTCCTGCAGATTCATTTTT 2417
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2418 AGAAAGTGGACCAGGACAATCTCCAGAGGTAGAAGAACATGTCTCTAAAAAACACTTCGAAGCTGATGAGAGAG 2491
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2492 ATTTTCCAATTAAAAAAAATAGTAGTACCAAAAAGAAACATTTAATAAGCGAAGTACCTAACTCCAAATCAGGT 2565
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2566 TCAAGTGGCACTGTACATGACTACATTATGAGGCAAATATTCACTGCACCAATATTCTCAGAATTGGAGATAGA 2639
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2640 AGTGAAAGAGCCAAGTGAAACACCAATGAACTTGGAAAATCAATTACCTACACCTTGGAAGAGAAGTTTGTCAT 2713
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2714 CACATATTCTATTTCATGAAGAAAATGCTGATGAAATAGAATTGCCACAGCCCAGATCTGCTACAAGCCAGATA 2787
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2788 ATACAAGCATTTCCTATAGATACACTTTTAGAATCTGGGATAATCAAAGTGATAGAATTAGATAAAGAACACCA 2861
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2862 TAAGAGTTCTTTGCTGGGTACGGGGATCACTTCTCCTAAAGGAAACCTAAAGGATTCCCAAGAGTATTATTCAG 2935
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 2936 AAATCAGAAGCGAGACAGAACCTCTTTCTGAGCAGAGTATACCCATCATTCCCAAAGACACTACTTCTGTTAGT 3009
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3010 AGAGCTGAATTTATACAGGAAGACCAAAATATGTTCCCACAAGATTCAAGTTATTATTCAATAGCAAATAAAGA 3083
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3084 ACTGTATTTGCCAAGAAATGGTCAGAGGCTTTGTAAAGACAAAAATGATCTCAGTTCTACTTTAGAAAGTTTAA 3157
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3158 CTAACTCATTAATGGATAAACTTAGTGAATCAGATGAAATAATGTTAAAATCCTTTTTAAAAAACATCTTCAAT 3231
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3232 GTTTTTTTCAAATATAATCATTCTGAAAGAAGAGGACAACCAGAAAAAGAATTAGAAAGACTAATTCAACCTTC 3305
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3306 TTTTACAAGTGACACAGAACACCTTGAAGAACTCCAAGAGGATTTTGATAAAGCAGACAAATTAGACAGAAAAC 3379
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3380 CTATTTTGAGTCCAAAGTTGCGTGTGTTTCTAGAAGAACTCTCAGAGTCAGAAGTAAAACATTTAAAATCTGAA 3453
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3454 TTAAGTAAACAAATCCAGCATTACCTTGTAGAAAGACTTTCAGAATCAGGACATATCACCAAGGAGGACTTACC 3527
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3528 AAAAATCTATCAAAATCTGTATCTGATGAATGAGAAAGCAGAGCAGAAAGGGCCAAACAGTTTTCAGGGGAAAT 3601
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3602 ATTCTGAAACTGTGAAAGAAATCATGTCTTTTGTCAACAATTTCAATCATCATTTCATAGATAAACATTTGGAA 3675
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3676 ATAAAGCTGAGATCTTTTTTAAAAGAGATTCTCCAAAACTATTTCCTAAAAAACATTTCAGAAAGCAGTTTATT 3749
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3750 TAATGAGACAGCATCTGAGACTATATACCCAAACATATCTTCTCTAAGGACTAAAAGTGTCTCAATATCTTTTC 3823
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3824 ATGAACTAGAACAAGATATTTCAAAGGGGAGTTTTGGTAGAAGGTTTGAAATAAACATGAAATATCCTTTAAGT 3897
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3898 AAATCTCTACAAAACTATCTGATAGCTTTATCAGAAAATGAATTATTACATCTAAAAGCTGATTTAAGCAAACA 3971
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 3972 CCTCCAGAGTCTTTTTATAGAAAAACTTTCAAAATCAGGACTAATGACAAAAAAGCAATTAGAAGGGATCAACC 4045
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4046 AGCATATAAATTTGCTTAATTCTAGTTCTATACCATTAAAATATATAAAAACACATTTACCTTTTAGAGATGAC 4119
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4120 TGTCACTTTGTGGAGAAGCATTCAGAAAAGCAAAATAAATATTCAAGAATTGTTCAACAAACCACTTTACAAAC 4193
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4194 GGTTTCTGAGGATAAACTTAGAGAAGCAGAATTGATTCGAGAGAAAGAAAAGAAATATTTTCCCTTACAGAATT 4267
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4268 TAAAGGGAAATTCATCTTTAATTAAGGAACAGAAAAGTTATTACACTAAGGAAGAAGCTAAAACACCAAGTTTA 4341
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4342 ATCAAAGTACAACCTTCTTCCAATGAAAATATCCAGGCAAGTCCATTAAGTAAGTCATCAGAAATACTTACAGA 4415
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4416 TATACTGCTTAAGAAACTAAGGAAAGAACATGTATTCACGCAGCTTCCTCAAGCAGAAAATTCTGTTCATAAAA 4489
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4490 CAGAGATTCAAGACCCATATAGTTGGGGTGGTAAATCAAAAATAACTCAATCAAAAGCTTGGTGTGAAAAGACA 4563
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4564 CTGAAAATGAAGTCCCTTGATAGAAAGGAGCATGTAAACATCTATAAATGGACTGTTCAGGAAAAACCTGAAGC 4637
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4638 AGTATTAACATCGTATCCAAGAATTCCTAATGCCAGAATGCCAAGGGAAGATGAGTACTTAAACAGAATCACTT 4711
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4712 TCCCTTCCTGGCAAAGTAGCACTTTAACTCATTTCAATACAGAGACTGGGGAAAAATCAAAATTAGAAGACCAG 4785
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4786 TATTGTCAGACATTGAAAGGAAATAATAACAATAATAAAAAGCATTTAGTAACATTTGCACAATACAAAAAAGA 4859
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4860 AATACAAACTCTTTATATAAAACCAGATGAAATTTGCAGTGAAAAATGTGCCAAGTTCCCTGAAATACAGTCAT 4933
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 4934 TCCAATATAAGGTTGTAGAAGATGAGAAAAACTTGAAACCACACCTCTTCCCAGAATTATTTAAGATAGAAGAT 5007
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 5008 CTAAAACCCAAGGTCCGAAAAGAAAGAGACCGTGTCGCCCAACCAAAAAAGTCATTTAACAAGATAGTCAGGAT 5081
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 5082 ACTACCAACCACACTGCCCACCACAAGAATTCACCTAAAGAAGTCTGTTCCAAGGACACTGCTTCACTGGACTG 5155
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 5156 CAAGAAGAACTATACATGATTGTTCAGATAAATTTGAGGATTTACATGACATGACCTCATTTACACACCTTAAA 5229
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 5230 AAAGTAAAATCAAGATCAAGGCTTTTAGGAAAAAGCTCAGATGATATCCATAACCATGCCAGACACTCTGCAAG 5303
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 5304 ACCATATACTGCTCCGGAGGTTAACAAGCAACGAGAAAGCTACAGTGGAAAGTTTACAAGTCGTCGAATGGTTT 5377
Query 1870 -------------------------------------------------------------------------- 1869
Sbjct 5378 CATCAGGCTTAGTTCATATAAATGATAAAACATCAGATTATGAAATGCATAAAATGCGGCCAAAAAAAATTAAA 5451
Query 1870 --------- 1869
Sbjct 5452 AGAGGATAT 5460
