Construct: ORF ccsbBroadEn_09680
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002536.1_s300c1, BRDN0000393273
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C2CD6 (151254)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 151254 | C2CD6 | C2 calcium dependent domain... | NM_152525.6 | 99.8% | 99.8% | 291G>A;1128T>A |
| 2 | human | 151254 | C2CD6 | C2 calcium dependent domain... | XM_006712331.3 | 99.7% | 99.6% | 291G>A;1128T>A;1161_1163delAGC |
| 3 | human | 151254 | C2CD6 | C2 calcium dependent domain... | XM_024452728.1 | 95.8% | 95.8% | 291G>A;1128T>A;1504_1505ins75 |
| 4 | human | 151254 | C2CD6 | C2 calcium dependent domain... | XM_006712332.3 | 95.7% | 95.6% | (many diffs) |
| 5 | human | 151254 | C2CD6 | C2 calcium dependent domain... | NM_001168217.2 | 86.2% | 81.2% | (many diffs) |
| 6 | human | 151254 | C2CD6 | C2 calcium dependent domain... | XM_006712333.3 | 75.2% | 74% | (many diffs) |
| 7 | human | 151254 | C2CD6 | C2 calcium dependent domain... | XM_006712334.3 | 75.2% | 74% | (many diffs) |
| 8 | human | 151254 | C2CD6 | C2 calcium dependent domain... | XM_006712335.4 | 74.4% | 74% | (many diffs) |
| 9 | human | 151254 | C2CD6 | C2 calcium dependent domain... | NM_001168216.2 | 62.7% | 61.5% | (many diffs) |
| 10 | human | 151254 | C2CD6 | C2 calcium dependent domain... | XM_011510736.2 | 62.7% | 61.5% | (many diffs) |
| 11 | human | 151254 | C2CD6 | C2 calcium dependent domain... | XM_006712336.3 | 62.4% | 61.9% | (many diffs) |
| 12 | human | 151254 | C2CD6 | C2 calcium dependent domain... | NM_001168221.2 | 32.5% | 29.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1935
- ORF length:
- 1869
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GCCACCCCAA GAGACAAATA GGCCTTTCAG CACACTTGAT AACCGCAGCG 121 GGCAGGTCCA AGTCCTGTCC GCCACCCCGC TATTGCAGAG GAATCCCTAC AGCAGCCCGG 181 ATATCATGCA CATTAAAGGG TCGGAGGCTT CTTCGGTCCC TTACGCCCTG AACCAGGGCA 241 CGACGGCCCT GCCTAAGAAC AAGAACCAGG AGGGCACCGG GCACCGGCTG CTGAACATGC 301 TGAGAAAAAC TCTTAAAGAG TCTGATAGTG AAGAACTGGA AATAACACAG GAGACACCAA 361 ATTTGGTGCC ATTTGGGGAT GTGGTTGGCT GCCTGGGCAT TCATATAAAG AACTGCAGAC 421 ATTTTATGCC TAAGATCAGT TTACAACATT ATGCTAATTT ATTCATTCGC ATCTCTATAA 481 ACAAAGCTGT GAAATGTACA AAAATGTGTA GCTTGCTATC CAAAAACGAT GAGAAGAACA 541 CTGTAATTAA GTTCGATGAA GTGAAGTATT TTTCTGTACA GGTTCCCAGA CGTTATGATG 601 ATAAGCGGAA TAATATTTTA TTGGAACTCA TACAATATGA CAATAGAGAA AAACGTGCTT 661 TCTTGTTAGG GAGTGTTCAG ATACATCTTT ATGAGGTAAT TCAGAAAGGG TGCTTCATTG 721 AAGAGGTCCA AGTGTTGCAT GGAAACATAT TTGTCTGCAG GCTGGAGGTG GAATTTATGT 781 TCTCCTATGG AAACTTTGGT TATGGATTTT CACATCAGTT AAAACCTCTT CAGAAAATTA 841 CTGAGCCATC CATGTTTATG AATCTTGCAC CACCTCCAGA AAGAACAGAT CCCGTGACAA 901 AAGTTATTAC ACCACAGACA GTAGAATATC CAGCATTCTT ATCCCCAGAC CTGAATGTTA 961 CTGTTGGGAC TCCAGCTGTG CAATCCTCCA ACCAGCCATC TGTAGTGCGA CTTGAAAAAC 1021 TTCAGCAACA ACCCCGGGAA AGGCTGGAAA AGATGAAAAA AGAATATAGA AATCTGAATA 1081 CATGGATAGA TAAAGCTAAC TATTTAGAAA GCATTCTAAT GCCAAAATTG GAACATAAGG 1141 ATTCTGAGGA AACTAATATA GATGAGGCAT CTGAAAACAC GAAAAGTAAT CAACCTGAAG 1201 AGGAGCTTGA AAATATTGTA GGAGTAGATA TCCCTCTTGT AAATGAGGAA GCTGAAACTA 1261 CTGCAAATGA GTTACTGGAT AATGATTCTG AGAAAGGCCT GACTATACCA ACTTTGAACC 1321 AATCGGACCA AGATAATTCA ACTGCTGATG CTTCTAAAAA TGATGAATCA ACACCTTCAC 1381 CCACAGAAGT GCACTCATTG TGCACTATTT CTAACCAGGA AACAATAAAA GCAGGCAGAA 1441 TACCACCTTT AGGTGAACGT CAATCAGAAA GCATGCCAGA CAGAAAAATG AAAAATGTAT 1501 TTTTTCCATT AGAAGTAAAA TTAAAAGATA ACTATCCAAG CATTTTAAAA GCAGACTCAT 1561 CTCTATCAGA GGTGGCTTTT TCACCAAAAG AATATAATTC ACCATCTTTC AGACCAGAAT 1621 ATATAGAATT CAAACCAAAA TTTCAGGATT GTTCAGATAA ATTTGAGGAT TTACATGACA 1681 TGACCTCATT TACACACCTT AAAAAAGTAA AATCAAGATC AAGGCTTTTA GGAAAAAGCT 1741 CAGATGATAT CCATAACCAT GCCAGACACT CTGCAAGACC ATATACTGCT CCGGAGGTTA 1801 ACAAGCAACG AGAAAGCTAC AGTGGAAAGT TTACAAGTCG TCGAATGGTT TCATCAGGCT 1861 TAGTTCATAT AAATGATAAA ACATCAGATT ATGAAATGCA TAAAATGCGG CCAAAAAAAA 1921 TTAAAAGAGG ATATTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1981 tatcaatttg ttgcaacgaa c