Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_09804
- Subject:
- XR_001783762.1
- Aligned Length:
- 2748
- Identities:
- 1499
- Gaps:
- 1082
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGGGAAGTGATGTCCGCTTCCTGCCCTCCCTGCGTGTCTGAGGGCGTAGAGGAAGCCCGTAAACAAACTACAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTCCCAGAAGGCGGTGCGTCCGGAGTCTGGAGTAGGCTGGGGCCGAGCCGCCGGGCTCGCGGAGGCGGCGGCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGCTGCTAAGGCTGAAGGAGCCGGGCCGGGCCCGCGGCAGAGGCCGTGGCTGGAACTGGGAAGGTGGCGGGGA 222
Query 1 ----------------ATGGCGACGTCGGGGGCGAACGGGCCTGGTTCGGCCACGGCCTCGGCTTCCAATCCGC 58
|||||||||||.||||||||||||||.|||||.|||||.|||||.||.||||||||.|
Sbjct 223 CGGACGCGGGGGTAAGATGGCGACGTCAGGGGCGAACGGGCCGGGTTCCGCCACAGCCTCAGCGTCCAATCCAC 296
Query 59 GCAAATTTAGTGAGAAGATTGCGCTGCAGAAGCAGCGTCAGGCCGAGGAGACGGCGGCCTTCGAGGAGGTGATG 132
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCAAGTTTAGTGAGAAGATTGCGCTGCAGAAGCAGCGTCAGGCCGAGGAGACGGCGGCCTTCGAGGAGGTGATG 370
Query 133 ATGGACATCGGCTCCACCCGGTTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGG 206
|||||||||||||||||.|||||||||||||||||||||||||||||.||.|||||||||||.|||||||||||
Sbjct 371 ATGGACATCGGCTCCACACGGTTACAGGCCCAAAAACTGCGACTGGCTTATACAAGGAGCTCCCATTATGGTGG 444
Query 207 GTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATT 280
.||||||||||||||||||||||||||||.|||||||||.|||||||||||||||||.||||||||||||||||
Sbjct 445 TTCTCTGCCCAATGTTAACCAGATTGGCTGTGGCCTGGCTGAGTTCCAGAGCCCCCTTCACTCACCTTTGGATT 518
Query 281 CATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTT 354
||||||||||||||||||||||||||.|||||||||||||.||.||||||.|.||.|||||||||||||||||.
Sbjct 519 CATCTCGGAGCACTCGGCACCATGGGTTGGTGGAACGGGTACAACGAGATGCCCGCAGAATGGTGTCCCCACTC 592
Query 355 CGCCGATACACCCGCCACATTGACAGCTCTCCCTATAGTCCTGCCTACTTATCTCCTCCCCCAGAGTCTAGCTG 428
|||||||||.||||||||||||||||.|||||.|||||.||||||||.|||||||||||||||||||||.||||
Sbjct 593 CGCCGATACCCCCGCCACATTGACAGTTCTCCATATAGCCCTGCCTATTTATCTCCTCCCCCAGAGTCTGGCTG 666
Query 429 GCGAAGGACGATGGCCTGGGGCAATTTCCCTGCAGAGAAGGGGCAGTTGTTTCGACTACCATCTGCACTTAACA 502
||||||||.||||.||||||||||..||||.||.||||||||||||||||||.||||.||.|||||||||||||
Sbjct 667 GCGAAGGATGATGCCCTGGGGCAACCTCCCAGCTGAGAAGGGGCAGTTGTTTAGACTGCCGTCTGCACTTAACA 740
Query 503 GGACAAGCTCTGACTCTGCCCTTCATACAAGTGTGATGAACCCCAGTCCCCAGGATACCTACCCAGGCCCCACA 576
|||||||||||||||||||.|||||.|||||||||||||||||.|..|||||.||.||.||.||||||||||||
Sbjct 741 GGACAAGCTCTGACTCTGCTCTTCACACAAGTGTGATGAACCCTAACCCCCAAGACACTTATCCAGGCCCCACA 814
Query 577 CCTCCCAGCATCCTGCCCA---GCCGACGTGGGGGTATTCTGGATGGTGAAATGGACCCCAAAGTACCTGCTAT 647
||||||||..||||||||| |||||.|.||.|||.|||||||||||||.|||||..|.|||||.||||||||
Sbjct 815 CCTCCCAGTGTCCTGCCCAGCCGCCGAGGAGGAGGTTTTCTGGATGGTGAGATGGATGCTAAAGTCCCTGCTAT 888
Query 648 TGAGGAGAACTTGCTAGATGACAAGCATTTGCTGAAGCCATGGGATGCTAAGAAGCTATCCTCATCCTCTTCCC 721
||||||||||.||.||||||||||||||.|||||||.||.|||||||||||||||||.||||||||.||.||.|
Sbjct 889 TGAGGAGAACGTGGTAGATGACAAGCATCTGCTGAAACCTTGGGATGCTAAGAAGCTGTCCTCATCTTCCTCTC 962
Query 722 GACCTCGGTCCTGTGAAGTCCCTGGAATTAACATCTTTCCATCTCCTGACCAGCCTGCCAATGTGCCTGTCCTC 795
|||||||.||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 963 GACCTCGATCCTGTGAAGTCCCTGGAATCAACATCTTTCCATCTCCTGACCAGCCTGCTAATGTGCCTGTCCTC 1036
Query 796 CCACCTGCCATGAACACGGGGGGCTCCCTACCTGACCTCACCAACCTGCACTTTCCCCCACCACTGCCCACCCC 869
|||||||||||||||||.||.||||||||||||||||||||||||||.|||||.||.||.|||||||||||.||
Sbjct 1037 CCACCTGCCATGAACACAGGAGGCTCCCTACCTGACCTCACCAACCTACACTTCCCTCCTCCACTGCCCACACC 1110
Query 870 CCTGGACCCTGAAGAGACAGCCTACCCTAGCCTGAGTGGGGGCAACAGTACCTCCAATTTGACCCACACCATGA 943
||||||||||||.|||||||.|||.||.||||||||||||||||||||||||.|||||||||||||.||.||||
Sbjct 1111 CCTGGACCCTGAGGAGACAGTCTATCCCAGCCTGAGTGGGGGCAACAGTACCACCAATTTGACCCATACTATGA 1184
Query 944 CTCACCTGGGCATCAGCAGGGGCATGGGCCTGGGCCCAGGCTATGATGCACCAGGACTTCATTCACCTCTCAGC 1017
|.||..||||||||||..|.||..|||||.|||||||..|||||||||.||
Sbjct 1185 CCCATTTGGGCATCAGTGGAGGTCTGGGCTTGGGCCCCAGCTATGATGTAC----------------------- 1235
Query 1018 CACCCATCCCTGCAGTCCTCCCTAAGCAATCCCAACCTCCAGGCTTCCCTGAGCAGTCCTCAGCCCCAGCTTCA 1091
Sbjct 1236 -------------------------------------------------------------------------- 1235
Query 1092 GGGCTCCCACAGCCACCCCTCTCTGCCTGCCTCCTCCTTGGCCCGCCATGTACTGCCCACCACCTCCCTGGGCC 1165
Sbjct 1236 -------------------------------------------------------------------------- 1235
Query 1166 ACCCCTCACTCAGTGCTCCGGCTCTTTCCTCCTCCTCTTCCTCCTCCTCCACTTCATCTCCTGTTTTGGGCGCC 1239
Sbjct 1236 -------------------------------------------------------------------------- 1235
Query 1240 CCCTCTTACCCTGCTTCTACCCCTGGGGCCTCCCCCCACCACCGCCGTGTGCCCCTCAGCCCCCTGAGTTTGCT 1313
Sbjct 1236 -------------------------------------------------------------------------- 1235
Query 1314 CGCGGGCCCAGCCGACGCCAGAAGGTCCCAACAGCAGCTGCCCAAACAGTTTTCGCCAACAATGTCACCCACCT 1387
Sbjct 1236 -------------------------------------------------------------------------- 1235
Query 1388 TGTCTTCCATCACTCAGGGCGTCCCCCTGGATACCAGTAAACTGTCCACTGACCAGCGGTTACCCCCATACCCA 1461
||||||||.|||.||||||||||||||.||.|.|||||||||||.||.||||||||||||
Sbjct 1236 --------------CAGGGCGTTCCCTTGGATACCAGTAAATTGCCTACTGACCAGCGATTGCCCCCATACCCA 1295
Query 1462 TACAGCTCCCCAAGTCTGGTTCTGCCTACCCAGCCCCACACCCCAAAGTCTCTACAGCAGCCAGGGCTGCCCTC 1535
||.|||.||||||||||.|||.|.||.|||||.||.|.||||||||||||||||||||| |.|||||||
Sbjct 1296 TATAGCCCCCCAAGTCTAGTTATACCCACCCATCCACCCACCCCAAAGTCTCTACAGCA------GTTGCCCTC 1363
Query 1536 TCAGTCTTGTTCAGTGCAGTCCTCAGGTGGGCAGCCCCCAGGCAGGCAGTCTCATTATGGGACACCGTACCCAC 1609
||||.|.||.|.|||||||.||||||||||.|||||.||||||||||||.|.|||||||||.|||.||||||||
Sbjct 1364 TCAGGCCTGCTTAGTGCAGCCCTCAGGTGGACAGCCTCCAGGCAGGCAGCCACATTATGGGGCACTGTACCCAC 1437
Query 1610 CTGGGCCCAGTGGGCATGGGCAACAGTCTTACCACCGGCCAATGAGTGACTTCAACCTGGGGAATCTGGAGCAG 1683
|||||.|||||||.||||||||||||.||||||||||.|||||.|.||||||||.|.||||||||||||||||.
Sbjct 1438 CTGGGTCCAGTGGACATGGGCAACAGCCTTACCACCGCCCAATAAATGACTTCAGCTTGGGGAATCTGGAGCAA 1511
Query 1684 TTCAGCATGGAGAGCCCATCAGCCAGCCTGGTGCTGGATCCCCCTGGCTTTTCTGAAGGGCCTGGATTTTTAGG 1757
||||.||||||||||||||||.||||||||||||||||||||||||.||||||||||||.||||||||||||||
Sbjct 1512 TTCAACATGGAGAGCCCATCAACCAGCCTGGTGCTGGATCCCCCTGCCTTTTCTGAAGGTCCTGGATTTTTAGG 1585
Query 1758 GGGTGAGGGGCCAATGGGTGGCCCCCAGGATCCCCACACCTTCAACCACCAGAACTTGACCCACTGTTCCCGCC 1831
|.|||||||..|||||.|||||||||||||.||.|||..|.|||||||||||||||||||||||||||||||||
Sbjct 1586 GAGTGAGGGATCAATGAGTGGCCCCCAGGACCCTCACGTCCTCAACCACCAGAACTTGACCCACTGTTCCCGCC 1659
Query 1832 ATGGCTCAGGGCCTAACATCATCCTCACAGGGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTG 1905
||||||||||.|||||.|||||.||||||||.|||||.||.|||||||||||||||||||||||||||||||||
Sbjct 1660 ATGGCTCAGGACCTAATATCATACTCACAGGAGACTCTTCCCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTG 1733
Query 1906 GCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCAT 1979
||.|||||||||||||||||||||||||||.||||.||||||||.||.||.|||||||||||||||||||||||
Sbjct 1734 GCTGGAGTGCCTGGCTTTGAGGTGTCAGCATCTGGGTTGGAGCTGGGCCTGGGGCTAGAAGATGAGCTGCGCAT 1807
Query 1980 GGAGCCACTGGGCCTGGAAGGGCTAAACATGCTGAGTGACCCCTGTGCCCTGCTGCCTGATCCTGCTGTGGAGG 2053
|||||||||||||||||||||.||||..||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1808 GGAGCCACTGGGCCTGGAAGGACTAACTATGCTGAGTGACCCCTGTGCCCTGCTGCCTGACCCTGCTGTGGAGG 1881
Query 2054 AGTCATTCCGCAGTGACCGGCTCCAA------------------------------------------------ 2079
|.||||||||.|||||.|||||.||.
Sbjct 1882 ACTCATTCCGTAGTGATCGGCTACAGTGAGGGGACCTCACTGCCATCCTTCTTCATGGCCCTGTCCCATCAGTC 1955
Query 2080 -------------------------------------------------------------------------- 2079
Sbjct 1956 TTCATCCCTTCCCCCTGGCCAGTAGAGACTACTCTCTGCCCCCAGATCCTTTTTCTAATATGAATGAAGGATCC 2029
Query 2080 -------------------------------------------------------------------------- 2079
Sbjct 2030 TAAAACTGAGGAAAGGGAAGGGGCTTGGCCAGGTGGCCCCTGAATGCTGTATGTCTGGTGGGCTTGGGGGAATT 2103
Query 2080 -------------------------------------------------------------------------- 2079
Sbjct 2104 CAAGGGAGGGCCTAAAAGCACTTGTAACTTTGAAAACCGTCTGTCTGGAGGTCAGAGCCTGTTGGGAAGCAAGG 2177
Query 2080 -------------------------------------------------------------------------- 2079
Sbjct 2178 TGTAGAGGGAAATCTTGGAGAGAGGGCTTGTCCAGAAGGGATGGGCACTACCAGCCCCTCCCTATTTCTCTTCC 2251
Query 2080 -------------------------------------------------------------------------- 2079
Sbjct 2252 CCTTGCAATGGAAGAGAGAGCCAGAATGGATATTATTTTTTATTAAATATATTATATGTTAATAAAAAATCCTA 2325
Query 2080 ---------- 2079
Sbjct 2326 TTAAACCTTT 2335
