Construct: ORF ccsbBroadEn_09804

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000941.1_s300c1, BRDN0000457030
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CRTC2 (200186)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 200186 CRTC2 CREB regulated transcriptio... NM_181715.3 99.9% 100% 1191C>T
2 human 200186 CRTC2 CREB regulated transcriptio... XM_005244946.1 99.2% 99.2% 635_649del;1206C>T
3 human 200186 CRTC2 CREB regulated transcriptio... XM_017000576.1 88.5% 71.1% (many diffs)
4 human 200186 CRTC2 CREB regulated transcriptio... XM_017000575.1 87.9% 70.6% (many diffs)
5 human 200186 CRTC2 CREB regulated transcriptio... XM_017000578.1 85.3% 71.5% 0_1ins199;303_304ins104;888C>T
6 human 200186 CRTC2 CREB regulated transcriptio... XM_017000577.1 84.7% 71% (many diffs)
7 human 200186 CRTC2 CREB regulated transcriptio... XM_005244949.2 83% 83% 0_1ins339;296_310del;867C>T
8 human 200186 CRTC2 CREB regulated transcriptio... XM_017000579.1 69.8% 69.5% (many diffs)
9 human 200186 CRTC2 CREB regulated transcriptio... XR_001737032.2 62.9% 1_140del;1134_1135ins407;1813_2249del
10 human 200186 CRTC2 CREB regulated transcriptio... XR_001737031.2 62.5% (many diffs)
11 mouse 74343 Crtc2 CREB regulated transcriptio... NM_028881.2 90% 92% (many diffs)
12 mouse 74343 Crtc2 CREB regulated transcriptio... XM_006502152.1 87.1% 89.1% (many diffs)
13 mouse 74343 Crtc2 CREB regulated transcriptio... XM_006502153.1 79% 81.7% (many diffs)
14 mouse 74343 Crtc2 CREB regulated transcriptio... XR_375593.1 66.5% (many diffs)
15 mouse 74343 Crtc2 CREB regulated transcriptio... XM_006502154.1 66.1% 67.2% (many diffs)
16 mouse 74343 Crtc2 CREB regulated transcriptio... XR_001783761.1 64.7% (many diffs)
17 mouse 74343 Crtc2 CREB regulated transcriptio... XR_001783762.1 54.5% (many diffs)
18 mouse 74343 Crtc2 CREB regulated transcriptio... XR_001783763.1 48% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2145
ORF length:
2079
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GACGTCGGGG GCGAACGGGC CTGGTTCGGC CACGGCCTCG GCTTCCAATC
121CGCGCAAATT TAGTGAGAAG ATTGCGCTGC AGAAGCAGCG TCAGGCCGAG GAGACGGCGG
181CCTTCGAGGA GGTGATGATG GACATCGGCT CCACCCGGTT ACAGGCCCAA AAACTGCGAC
241TGGCATACAC AAGGAGCTCT CATTATGGTG GGTCTCTGCC CAATGTTAAC CAGATTGGCT
301CTGGCCTGGC CGAGTTCCAG AGCCCCCTCC ACTCACCTTT GGATTCATCT CGGAGCACTC
361GGCACCATGG GCTGGTGGAA CGGGTGCAGC GAGATCCTCG AAGAATGGTG TCCCCACTTC
421GCCGATACAC CCGCCACATT GACAGCTCTC CCTATAGTCC TGCCTACTTA TCTCCTCCCC
481CAGAGTCTAG CTGGCGAAGG ACGATGGCCT GGGGCAATTT CCCTGCAGAG AAGGGGCAGT
541TGTTTCGACT ACCATCTGCA CTTAACAGGA CAAGCTCTGA CTCTGCCCTT CATACAAGTG
601TGATGAACCC CAGTCCCCAG GATACCTACC CAGGCCCCAC ACCTCCCAGC ATCCTGCCCA
661GCCGACGTGG GGGTATTCTG GATGGTGAAA TGGACCCCAA AGTACCTGCT ATTGAGGAGA
721ACTTGCTAGA TGACAAGCAT TTGCTGAAGC CATGGGATGC TAAGAAGCTA TCCTCATCCT
781CTTCCCGACC TCGGTCCTGT GAAGTCCCTG GAATTAACAT CTTTCCATCT CCTGACCAGC
841CTGCCAATGT GCCTGTCCTC CCACCTGCCA TGAACACGGG GGGCTCCCTA CCTGACCTCA
901CCAACCTGCA CTTTCCCCCA CCACTGCCCA CCCCCCTGGA CCCTGAAGAG ACAGCCTACC
961CTAGCCTGAG TGGGGGCAAC AGTACCTCCA ATTTGACCCA CACCATGACT CACCTGGGCA
1021TCAGCAGGGG CATGGGCCTG GGCCCAGGCT ATGATGCACC AGGACTTCAT TCACCTCTCA
1081GCCACCCATC CCTGCAGTCC TCCCTAAGCA ATCCCAACCT CCAGGCTTCC CTGAGCAGTC
1141CTCAGCCCCA GCTTCAGGGC TCCCACAGCC ACCCCTCTCT GCCTGCCTCC TCCTTGGCCC
1201GCCATGTACT GCCCACCACC TCCCTGGGCC ACCCCTCACT CAGTGCTCCG GCTCTTTCCT
1261CCTCCTCTTC CTCCTCCTCC ACTTCATCTC CTGTTTTGGG CGCCCCCTCT TACCCTGCTT
1321CTACCCCTGG GGCCTCCCCC CACCACCGCC GTGTGCCCCT CAGCCCCCTG AGTTTGCTCG
1381CGGGCCCAGC CGACGCCAGA AGGTCCCAAC AGCAGCTGCC CAAACAGTTT TCGCCAACAA
1441TGTCACCCAC CTTGTCTTCC ATCACTCAGG GCGTCCCCCT GGATACCAGT AAACTGTCCA
1501CTGACCAGCG GTTACCCCCA TACCCATACA GCTCCCCAAG TCTGGTTCTG CCTACCCAGC
1561CCCACACCCC AAAGTCTCTA CAGCAGCCAG GGCTGCCCTC TCAGTCTTGT TCAGTGCAGT
1621CCTCAGGTGG GCAGCCCCCA GGCAGGCAGT CTCATTATGG GACACCGTAC CCACCTGGGC
1681CCAGTGGGCA TGGGCAACAG TCTTACCACC GGCCAATGAG TGACTTCAAC CTGGGGAATC
1741TGGAGCAGTT CAGCATGGAG AGCCCATCAG CCAGCCTGGT GCTGGATCCC CCTGGCTTTT
1801CTGAAGGGCC TGGATTTTTA GGGGGTGAGG GGCCAATGGG TGGCCCCCAG GATCCCCACA
1861CCTTCAACCA CCAGAACTTG ACCCACTGTT CCCGCCATGG CTCAGGGCCT AACATCATCC
1921TCACAGGGGA CTCCTCTCCA GGTTTCTCTA AGGAGATTGC AGCAGCCCTG GCCGGAGTGC
1981CTGGCTTTGA GGTGTCAGCA GCTGGATTGG AGCTAGGGCT TGGGCTAGAA GATGAGCTGC
2041GCATGGAGCC ACTGGGCCTG GAAGGGCTAA ACATGCTGAG TGACCCCTGT GCCCTGCTGC
2101CTGATCCTGC TGTGGAGGAG TCATTCCGCA GTGACCGGCT CCAATGCCCA ACTTTCTTGT
2161ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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