Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09870
Subject:
XM_011535555.2
Aligned Length:
4884
Identities:
1262
Gaps:
3621

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCACACATTGCCAGATCATCAGCTGCGTAAAAAATACAAGAGACTGTGTCTATCTAGTAAAGATCCCATCTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CACAGCAGTTGCAACTGGGACTACCAGCTTGTTAAATTTGCAGAAGTCTACCCTCATCTGTTGTGCTCTGTCTA  148

Query    1  --------------------------------------------------------------------ATGACT  6
                                                                                ||||||
Sbjct  149  GCTTCTACAAAAGCAAGACTGGAGAAATAAGCAGGATTGTACATCTTTTAAATTGTGTATTTTGTGTCATGACT  222

Query    7  TCTCAAGAGAAGACAGAAGAGTATCCTTTTGCAGATATATTTGATGAAGATGAAACTGAAAGGAATTTTTTGTT  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCTCAAGAGAAGACAGAAGAGTATCCTTTTGCAGATATATTTGATGAAGATGAAACTGAAAGGAATTTTTTGTT  296

Query   81  GTCCAAACCTGTTTGCTTTGTTGTATTTGGGAAACCAGGTGTTGGGAAAACAACATTAGCCCGTTACATAACAC  154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTCCAAACCTGTTTGCTTTGTTGTATTTGGGAAACCAGGTGTTGGGAAAACAACATTAGCCCGTTACATAACAC  370

Query  155  AGGCATGGAAATGTATTCGTGTTGAAGCTTTGCCAATTTTAGAAGAACAGATTGCTGCTGAAACCGAATCAGGA  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGCATGGAAATGTATTCGTGTTGAAGCTTTGCCAATTTTAGAAGAACAGATTGCTGCTGAAACCGAATCAGGA  444

Query  229  GTTATGTTGCAATCAATGTTGATCAGCGGTCAAAGCATTCCAGATGAACTTGTCATAAAGCTAATGTTGGAGAA  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTTATGTTGCAATCAATGTTGATCAGCGGTCAAAGCATTCCAGATGAACTTGTCATAAAGCTAATGTTGGAGAA  518

Query  303  GCTCAACTCCCCAGAAGTCTGTCACTTTGGTTATATTATCACTGAAATACCATCACTTTCACAGGATGCCATGA  376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCTCAACTCCCCAGAAGTCTGTCACTTTGGTTATATTATCACTGAAATACCATCACTTTCACAGGATGCCATGA  592

Query  377  CTACCTTACAGCAAATAGAATTAATTAAAAACTTAAACCTGAAACCTGATGTTATAATCAATATAAAGTGTCCT  450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTACCTTACAGCAAATAGAATTAATTAAAAACTTAAACCTGAAACCTGATGTTATAATCAATATAAAGTGTCCT  666

Query  451  GACTATGATTTGTGCCAGAGAATTTCTGGGCAAAGACAGCACAATAATACGGGATACATATACAGTAGAGACCA  524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GACTATGATTTGTGCCAGAGAATTTCTGGGCAAAGACAGCACAATAATACGGGATACATATACAGTAGAGACCA  740

Query  525  GTGGGATCCTGAAGTCATTGAGAATCATAGGAAAAAGAAGAAAGAAGCCCAAAAGGACGGAAAAGGAGAAGAGG  598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTGGGATCCTGAAGTCATTGAGAATCATAGGAAAAAGAAGAAAGAAGCCCAAAAGGACGGAAAAGGAGAAGAGG  814

Query  599  AAGAAGAGGAAGAAGAGCAAGAAGAAGAAGAGGCATTTATTGCCGAAATGCAGATGGTGGCTGAAATTCTTCAT  672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AAGAAGAGGAAGAAGAGCAAGAAGAAGAAGAGGCATTTATTGCCGAAATGCAGATGGTGGCTGAAATTCTTCAT  888

Query  673  CATCTAGTCCAGAGGCCTGAAGATTATTTGGAAAATGTTGAAAACATTGTTAAGCTTTATAAGGAAACAATTCT  746
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CATCTAGTTCAGAGGCCTGAAGATTATTTGGAAAATGTTGAAAACATTGTTAAGCTTTATAAGGAAACAATTCT  962

Query  747  CCAAACTTTAGAAGAAGTAATGGCTGAACACAATCCCCAGTATCTCATTGAGCTAAATGGAAATAAACCAGCAG  820
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCAAACTTTAGAAGAAGTAATGGCTGAACACAATCCCCAGTATCTCATTGAGCTAAATGGAAATAAACCAGCAG  1036

Query  821  AGGAGCTCTTTATGATTGTTATGGATCGACTTAAATATCTGAACCTAAAAAGAGCAGCTATTCTAACCAAACTT  894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGGAGCTCTTTATGATTGTTATGGATCGACTTAAATATCTGAACCTAAAAAGAGCAGCTATTCTAACCAAACTT  1110

Query  895  CAGGGTGCAGAGGAAGAAATTAATGACACAATGGAAAATGATGAGCTATTTCGTACTCTTGCATCTTATAAACT  968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGGGTGCAGAGGAAGAAATTAATGACACAATGGAAAATGATGAGCTATTTCGTACTCTTGCATCTTATAAACT  1184

Query  969  TATTGCACCAAGATACAGATGGCAAAGAAGTAAATGGGGACGTACATGTCCTGTGAATTTAAAAGATGGTAACA  1042
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TATTGCACCAAGATACAGATGGCAAAGAAGTAAATGGGGACGTACATGTCCTGTGAATTTAAAAGATGGTAACA  1258

Query 1043  TTTATTCAGGATTACCAGATTATTCTGTGAGTTTTCTAGGTAAAATCTACTGTCTTTCATCAGAAGAAGCATTA  1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TTTATTCAGGATTACCAGATTATTCTGTGAGTTTTCTAGGTAAAATCTACTGTCTTTCATCAGAAGAAGCATTA  1332

Query 1117  AAACCATTTTTGTTGAACCCACGTCCCTATCTGCTTCCACCTATGCCAGGACCACCATGTAAAGTATTCATACT  1190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAACCATTTTTGTTGAACCCACGTCCCTATCTGCTTCCACCTATGCCAGGACCACCATGTAAAGTATTCATACT  1406

Query 1191  TGGACCTCAATATTCAGGGAAAACAACACTTTGCAATATGCTTGCAGAAAATTACAAAGGAAAGGT----GACT  1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct 1407  TGGACCTCAATATTCAGGGAAAACAACACTTTGCAATATGCTTGCAGAAAATTACAAAGGAAAGGTAGTCGACT  1480

Query 1261  ------AAC-----------------------------------------------------------------  1263
                  |||                                                                 
Sbjct 1481  ATGCCCAACTTGTTCAGCCACGTTTTGATAAAGCCCGTGAAACATTAGTAGAAAATACCATAGCTGAGGCCACT  1554

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 1555  GCAGCAGCAATTAAAGTTGTGAAAGAAAAGCTTCTCAGGGAACTGCAAGCTAGAAAACAAGCTGAAACAGCTTT  1628

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 1629  AAGAGAATTTCAAAGGCAATATGAAAAAATGGAGTTTGGAGTATTCCCAATGGAGGCAACACACTCATCAATTG  1702

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 1703  ATGAAGAAGGGTACATTCAAGGCTCCCAAAGGGACAGAGGCAGCTCTTTAGTGGACACCGAAGAAGCCAAAACA  1776

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 1777  AAGTCAGAAAATGTCCTCCATGATCAAGCTGCTAAAGTTGATAAAGATGATGGAAAAGAAACTGGTGAAACATT  1850

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 1851  CACATTTAAAAGGCATTCTCAAGATGCTAGTCAAGATGTAAAGTTGTATTCAGATACAGCCCCAACAGAAGACT  1924

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 1925  TGATAGAAGAGGTAACTGCAGATCATCCAGAGGTTGTGACCATGATTGAAGAGACTATAAAAATGTCACAGGAT  1998

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 1999  ATAAACTTTGAACAGCCATATGAAAAACATGCTGAAATCTTACAGGAAGTCCTTGGAGAGGTAATGGAAGAAAA  2072

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2073  CAAGGATAGGTTTCCTGGTGCCCCAAAATATGGAGGCTGGATTGTGGACAACTGCCCTATTGTAAAAGAATTGT  2146

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2147  GGATGGCCTTAATCAAGAAAGGAATTATACCTGATTTGGTCATCTATTTATCAGATACAGAAAACAATGGAAAA  2220

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2221  TGTTTATTTAATAGAATATATTTACAGAAGAAATCTGAAATTGACTCTAAGATTTTAGAAAGATTATTAGAAGA  2294

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2295  ACTACAAAAGAAAAAAAAAGAAGAAGAAGAAGCAAGAAAAGCCACAGAAGAGGAATTGAGACTCGAAGAAGAAA  2368

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2369  ATCGAAGGCTACTGGAACTTATGAAAGTGAAGGCAAAAGAAGCTGAAGAGACTGATAATGAGGATGAAGAGGAG  2442

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2443  ATTGAAGGTGATGAGTTGGAAGTTCACGAAGAGCCTGAGGCATCTCACGATACCCGAGGGTCATGGTTACCTGA  2516

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2517  GGAGTTTGAAGCATCTGAGGTCCCTGAAACTGAGCCTGAAGCAGTATCTGAGCCTATCGAGGAAACTACAGTGG  2590

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2591  AAACAGAAATCCCAAAAGGATCCAAAGAGGGCCTGGAAATTGAAAAATTATCTGAAACAGTTGTACTACCTGAG  2664

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2665  TTTCCAGAAGACTCTTATCCTGATGTTCCCGAAATGGAGCCATTTAAAGAGAAGATTGGTTCTTTCATCATCCT  2738

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2739  CTGGAAACAGCTAGAAGCAACAATTAGTGAGGCTTACATTAAAATTTTAAACTTGGAGATTGCTGACAGAACTC  2812

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2813  CACAGGAATTACTTCAAAAAGTAGTTGAGACTATGGAAAAACCATTTCAATATACTGCATGGGAGTTAACTGGG  2886

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2887  GAAGATTATGAGGAAGAAACAGAAGACTACCAGACTGAAGCAGAGGTTGATGAGGAGCTAGAGGAAGAGGAAGA  2960

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 2961  GGAAGAGGGTGAAGATAAAATGAAGGAGAGAAAGAGGCATTTGGGAGACACAAAACACTTTTGTCCGGTGGTCC  3034

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3035  TCAAAGAAAACTTCATCCTGCAACCAGGAAACACAGAAGAAGCAGCCAAGTATCGAGAAAAGATCTACTACTTT  3108

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3109  TCAAGTGCTGAGGCTAAAGAAAAGTTTTTGGAGCATCCTGAGGATTATGTGGCTCATGAAGAACCATTGAAGGC  3182

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3183  TCCTCCATTAAGAATATGCCTTGTCGGCCCCCAGGGCTCTGGCAAAACTATGTGTGGAAGACAGTTGGCAGAAA  3256

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3257  AATTAAACATTTTTCACATTCAGTTTGAAGAAGTTCTTCAAGAAAAACTACTACTCAAAACTGAAAAGAAAGTG  3330

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3331  GGACCTGAATTTGAGGAAGATTCTGAGAACGAGCAAGCTGCCAAACAAGAACTTGAAGAGCTTGCAATTCAGGC  3404

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3405  CAATGTCAAAGTTGAGGAAGAAAATACAAAAAAGCAGCTTCCAGAAGTACAACTTACAGAAGAAGAAGAAGTAA  3478

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3479  TCAAATCAAGTCTAATGGAAAATGAGCCCTTGCCTCCTGAAATTCTTGAAGTAATTCTTTCTGAGTGGTGGCTT  3552

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3553  AAGGAACCAATACGTTCCACAGGTTTTATATTAGATGGTTTCCCACGATATCCAGAAGAGGCCCAGTTTTTGGG  3626

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3627  AGATCGTGGATTTTTCCCAGATGCAGCTGTTTTTATACAAGTTGATGATCAAGATATTTTTGATCGCCTCCTTC  3700

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3701  CTGCCCAAATTGAAAAGTGGAAACTAAAACAAAAGAAGAAATTAGAAAGGAAGAAACTGATCAAAGACATGAAG  3774

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3775  GCAAAAATCAGGGTTGATACGATTGCTAAAAGAAGGGCTGAACTTATATTAGAGAGAGATAAAAAAAGGAGGGA  3848

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3849  GAATGTTGTTAGAGATGATGAAGAGATTAGTGAGGAAGAACTTGAAGAAGACAATGATGATATTGAAAACATCC  3922

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3923  TTGAAGATGAGTTTCCAAAAGATGAGGAAGAGATGAGTGGCGAGGAAGATGAAGAACAGGAAACTGATGCAATT  3996

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 3997  GAGCGCCTGAGAGGTGAACTAGGAGAAAAATTTGAAGCAGATACACATAATTTACAAATAATACAGGATGAACT  4070

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4071  TGAGAGGTATTTGATACCAATAATTTCCATTAATGGAGCTCGGAGAAATCACATTGTACAATATACATTGAATA  4144

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4145  TGAAACTGAAACCACTGGTGGAAAATCGTGCAAGCATTTTTGAGAAATGTCATCCAATACCAGCACCCCTTGCC  4218

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4219  CAGAAAATGCTCACCTTTACCTACAAGTATATAAGCTCATTCGGCTATTGGGACCCTGTAAAGCTAAGTGAAGG  4292

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4293  AGAGACAATCAAGCCAGTTGAAAATGCAGAGAATCCAATTTATCCTGTAATCCATCGTCAGTATATTTATTTTT  4366

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4367  TATCTAGTAAAGAAACAAAAGAAAAATTTATGAAGAACCCAATCAAATATATCCGCCAACCCAAACCTAAGCCT  4440

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4441  ACTGTGCCCATTAGGATTATAATTGTGGGGCCTCCAAAATCTGGGAAAACTACAGTTTTATGTTTTTCAGTTGC  4514

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4515  CAAAAAAATTACAAGTGAATATGGGTTAAAGCATTTATCAATAGGAGGAGCTTTGCGTTATGTACTAAACAATC  4588

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4589  ACCCGGAAACAGAGCTGGCACTTATGTTAAATTGGCATCTTCATAAAGGAATGACAGCACCTGATGAACTGGCT  4662

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4663  ATTCAAGCCTTAGAACTTTCTCTGATGGAAAGTGTGTGCAATACTGCAGGATTAACAGCACCAGTTGAACACAA  4736

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4737  TATTCAAGGTACTGTGGGAGTTATCTGTCAAATTCTGCCAAAATCTATCTCCAGCATGCTGAGTGTAGAAATTC  4810

Query 1264  --------------------------------------------------------------------------  1263
                                                                                      
Sbjct 4811  AGAGCTCTCTCCTACGCCCACCTTCTGAACTGTGTTTGGATGTGTCCTGCCCACCTCATGGCTCTTGGCCTGAC  4884

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