Construct: ORF ccsbBroadEn_09870
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015800.1_s300c1, BRDN0000389180
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AK9 (221264)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 221264 | AK9 | adenylate kinase 9 | NM_001329602.1 | 99.9% | 100% | 681T>C |
| 2 | human | 221264 | AK9 | adenylate kinase 9 | NM_145025.4 | 99.9% | 100% | 681T>C |
| 3 | human | 221264 | AK9 | adenylate kinase 9 | NM_001329603.1 | 85.3% | 85.3% | 1_216del;897T>C |
| 4 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535559.3 | 39.6% | 39.4% | (many diffs) |
| 5 | human | 221264 | AK9 | adenylate kinase 9 | NR_138057.1 | 38.8% | (many diffs) | |
| 6 | human | 221264 | AK9 | adenylate kinase 9 | XM_017010388.2 | 31% | 30.9% | (many diffs) |
| 7 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535556.3 | 29.2% | 29.1% | (many diffs) |
| 8 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535555.2 | 25.8% | 25.7% | (many diffs) |
| 9 | human | 221264 | AK9 | adenylate kinase 9 | XM_017010386.1 | 24.8% | 24.7% | (many diffs) |
| 10 | human | 221264 | AK9 | adenylate kinase 9 | XM_017010384.1 | 24.6% | 24.5% | (many diffs) |
| 11 | human | 221264 | AK9 | adenylate kinase 9 | NM_001145128.2 | 22% | 21.9% | (many diffs) |
| 12 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535552.3 | 21.9% | 21.8% | (many diffs) |
| 13 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535553.3 | 21.9% | 21.8% | (many diffs) |
| 14 | human | 221264 | AK9 | adenylate kinase 9 | XM_006715376.3 | 21.2% | 21.1% | (many diffs) |
| 15 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535550.2 | 21.1% | 21% | (many diffs) |
| 16 | human | 221264 | AK9 | adenylate kinase 9 | XM_024446350.1 | 21.1% | 21% | (many diffs) |
| 17 | human | 221264 | AK9 | adenylate kinase 9 | XR_942337.2 | 20.7% | (many diffs) | |
| 18 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535554.2 | 20.5% | 17.6% | (many diffs) |
| 19 | human | 221264 | AK9 | adenylate kinase 9 | XM_017010385.2 | 10.7% | 10.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1329
- ORF length:
- 1263
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TTCTCAAGAG AAGACAGAAG AGTATCCTTT TGCAGATATA TTTGATGAAG 121 ATGAAACTGA AAGGAATTTT TTGTTGTCCA AACCTGTTTG CTTTGTTGTA TTTGGGAAAC 181 CAGGTGTTGG GAAAACAACA TTAGCCCGTT ACATAACACA GGCATGGAAA TGTATTCGTG 241 TTGAAGCTTT GCCAATTTTA GAAGAACAGA TTGCTGCTGA AACCGAATCA GGAGTTATGT 301 TGCAATCAAT GTTGATCAGC GGTCAAAGCA TTCCAGATGA ACTTGTCATA AAGCTAATGT 361 TGGAGAAGCT CAACTCCCCA GAAGTCTGTC ACTTTGGTTA TATTATCACT GAAATACCAT 421 CACTTTCACA GGATGCCATG ACTACCTTAC AGCAAATAGA ATTAATTAAA AACTTAAACC 481 TGAAACCTGA TGTTATAATC AATATAAAGT GTCCTGACTA TGATTTGTGC CAGAGAATTT 541 CTGGGCAAAG ACAGCACAAT AATACGGGAT ACATATACAG TAGAGACCAG TGGGATCCTG 601 AAGTCATTGA GAATCATAGG AAAAAGAAGA AAGAAGCCCA AAAGGACGGA AAAGGAGAAG 661 AGGAAGAAGA GGAAGAAGAG CAAGAAGAAG AAGAGGCATT TATTGCCGAA ATGCAGATGG 721 TGGCTGAAAT TCTTCATCAT CTAGTCCAGA GGCCTGAAGA TTATTTGGAA AATGTTGAAA 781 ACATTGTTAA GCTTTATAAG GAAACAATTC TCCAAACTTT AGAAGAAGTA ATGGCTGAAC 841 ACAATCCCCA GTATCTCATT GAGCTAAATG GAAATAAACC AGCAGAGGAG CTCTTTATGA 901 TTGTTATGGA TCGACTTAAA TATCTGAACC TAAAAAGAGC AGCTATTCTA ACCAAACTTC 961 AGGGTGCAGA GGAAGAAATT AATGACACAA TGGAAAATGA TGAGCTATTT CGTACTCTTG 1021 CATCTTATAA ACTTATTGCA CCAAGATACA GATGGCAAAG AAGTAAATGG GGACGTACAT 1081 GTCCTGTGAA TTTAAAAGAT GGTAACATTT ATTCAGGATT ACCAGATTAT TCTGTGAGTT 1141 TTCTAGGTAA AATCTACTGT CTTTCATCAG AAGAAGCATT AAAACCATTT TTGTTGAACC 1201 CACGTCCCTA TCTGCTTCCA CCTATGCCAG GACCACCATG TAAAGTATTC ATACTTGGAC 1261 CTCAATATTC AGGGAAAACA ACACTTTGCA ATATGCTTGC AGAAAATTAC AAAGGAAAGG 1321 TGACTAACTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1381 tttgttgcaa cgaac