Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_09944
• Subject: NM_001033275.4
• Aligned Length: 1329
• Identities: 933
• Gaps: 222

Alignment

Query    1  ATGCGGCGCTACCTGCGCGTCGTGGTGCTGTGTGTGGCCTGCGGCTTCTGCTCGCTCCTTTACGCTTTCAGCCA  74
            |||||||||||||||||.|||||.|.||||||..||||||||||||||||||||||.||.|||||.||||||||
Sbjct    1  ATGCGGCGCTACCTGCGGGTCGTAGGGCTGTGCCTGGCCTGCGGCTTCTGCTCGCTGCTGTACGCCTTCAGCCA  74

Query   75  GCTCGCCGTGTCCCTGGAAGAAGGAACGGGC-GGCGGTGGCGGGAAGCCGCAGGCCGCGGTGGCTTCCTGGCTC  147
            ||||||.||||||.||||.||||||    || |.|||.|||.|.|.|||||||||||||||.|.|||||||||.
Sbjct   75  GCTCGCGGTGTCCTTGGAGGAAGGA----GCTGCCGGGGGCCGCAGGCCGCAGGCCGCGGTAGTTTCCTGGCTG  144

Query  148  GCGGGCGGCGGACGCGGCGCCGTGAGAGGCGCCGGCGTCGCGGGCCCCGCAGCGCATCCCGGCGTGTCGGACAG  221
            ||||.|||.|||||||||.|.|.|||||||||.|||..|||||||            ||.|||..|.|||.|||
Sbjct  145  GCGGACGGTGGACGCGGCACGGGGAGAGGCGCGGGCAGCGCGGGC------------CCGGGCCGGACGGGCAG  206

Query  222  GTGTAAAGATTTCTCTCTGTGTTACTGGAATCCCTATTGGATGCTGCCCTCTGATGTTTGTGGAATGAACTGCT  295
            ||                                                              ||||      
Sbjct  207  GT--------------------------------------------------------------ATGA------  212

Query  296  TTTGGGAAGCGGCTTTTAGGTACAGTCTGAAAATACAGCCTGTTGAGAAAATGCATCTAGCTGTAGTTGCCTGT  369
                                     |.||||||.|..|||.|.||||||||||||.||.|||||.|||||||||
Sbjct  213  -------------------------TATGAAAACAAGGCCCGATGAGAAAATGCACCTTGCTGTTGTTGCCTGT  261

Query  370  GGTGAAAGACTGGAAGAAACTATGACCATGTTGAAGTCAGCTATCATTTTCAGCATCAAACCTCTTCAATTCCA  443
            |||||.|||||||||||||||.||||.|||||||||||||||.|.||||||||||||||.||.||.||..||||
Sbjct  262  GGTGAGAGACTGGAAGAAACTGTGACTATGTTGAAGTCAGCTCTGATTTTCAGCATCAAGCCACTGCACGTCCA  335

Query  444  TATTTTTGCTGAAGATCAGCTACATCATAGCTTTAAAGGCAGACTTGACAACTGGTCATTTCTACAAACATTTA  517
            .||.|||||||||||.||.||.||..||||||||||||.||||||||.||.||||||.||.||.|..|.||||.
Sbjct  336  CATCTTTGCTGAAGACCAACTGCACGATAGCTTTAAAGACAGACTTGCCAGCTGGTCCTTCCTGCGGAGATTTG  409

Query  518  ATTATACGTTATACCCCATAACCTTTCCAAGTGAGAATGCAGCAGAGTGGAAAAAACTCTTTAAACCATGTGCT  591
            |.||.|...|.|||||.||.|||||.|||.||||.|..||.||.||.|||||.||.||||||||.||.|||||.
Sbjct  410  ACTACAGCCTGTACCCTATCACCTTCCCAGGTGACAGCGCCGCGGACTGGAAGAAGCTCTTTAAGCCCTGTGCG  483

Query  592  TCGCAGAGATTGTTCTTGCCGTTAATCCTGAAAGAAGTTAACTCACTATTGTATGTCGACACTGATATCCTTTT  665
            ||.|||||..||||||||||.|||||.||||||||||||.|||||||.||||||||.|||||||||||||||||
Sbjct  484  TCCCAGAGGCTGTTCTTGCCATTAATACTGAAAGAAGTTGACTCACTGTTGTATGTGGACACTGATATCCTTTT  557

Query  666  TTTACGACCAGTTGATGATATTTGGTCTTTACTAAAGAAATTTAATTCCACACAAATTGCTGCAATGGCACCAG  739
            |||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||
Sbjct  558  TTTACGACCTGTTGATGATATTTGGTCATTACTAAAGAAATTTAATTCCACACAAATTGCTGCGATGGCACCAG  631

Query  740  AACATGAGGAACCTCGAATAGGATGGTATAATCGCTTTGCTAGGCATCCATATTATGGAAAAACTGGAGTAAAC  813
            ||||.|||||.||..||||.||||||||||||||||||||..||||.||.||.|||||.|..||.||.||.|||
Sbjct  632  AACACGAGGAGCCCAGAATTGGATGGTATAATCGCTTTGCCCGGCACCCGTACTATGGGAGGACGGGCGTGAAC  705

Query  814  TCTGGAGTTATGTTGATGAACATGACTCGAATGAGAAGGAAGTATTTCAAGAATGATATGACAACTGTACGACT  887
            ||||||||.|||.|||||||||||||.||.|||||.||||||||.||||||||||||||||||||||..||.||
Sbjct  706  TCTGGAGTGATGCTGATGAACATGACCCGGATGAGGAGGAAGTACTTCAAGAATGATATGACAACTGCGCGGCT  779

Query  888  ACAATGGGGAGATATACTTATGCCATTGCTTAAAAAATACAAACTAAACATCACATGGGGTGATCAAGATCTAT  961
            |||||||||.||.||||||||||||.||||||||||.||||||||.||||||||.|||||.|||||.|||||.|
Sbjct  780  ACAATGGGGGGACATACTTATGCCACTGCTTAAAAAGTACAAACTGAACATCACGTGGGGCGATCAGGATCTGT  853

Query  962  TGAATATCGTGTTTTTTCATAATCCAGAAAGCCTTTTTGTTTTTCCGTGTCAATGGAATTATCGACCAGATCAT  1035
            |.|||||||||||||..||.||||||||||||||.|||||||||||.||||||||||||||.|||||||||||.
Sbjct  854  TAAATATCGTGTTTTCCCACAATCCAGAAAGCCTCTTTGTTTTTCCATGTCAATGGAATTACCGACCAGATCAC  927

Query 1036  TGTATATATGGAAGCAATTGCCAAGAAGCAGAAGAAGGAGGAATCTTTATTCTTCATGGGAACAGAGGTGTTTA  1109
            |||||||||||.|||||.||||.||||||||||||||.||||.||||.|||||||||||.||||||||||||||
Sbjct  928  TGTATATATGGGAGCAACTGCCGAGAAGCAGAAGAAGAAGGAGTCTTCATTCTTCATGGAAACAGAGGTGTTTA  1001

Query 1110  CCATGACGATAAGCAACCAGCATTTAGAGCTGTTTATGAAGCACTGAGAAATTGTTCTTTTGAAGATGACAACA  1183
            |||||||||.|||||.||||||||.||||||||.|||||||||||.||||||||||        |.||.|    
Sbjct 1002  CCATGACGACAAGCAGCCAGCATTCAGAGCTGTGTATGAAGCACTAAGAAATTGTT--------GGTGTC----  1063

Query 1184  TCCGTTCCTTATTAAAACCTTTAGAACTGGAACTACAAAAAACAGTGCATAC-----ATACTGTGGAA---AAA  1249
                        |||.|.|.|.||.|.||...||.|        |||..|.|     ||...||||.|   |. 
Sbjct 1064  ------------TAACAGCGTCAGCAGTGTCGCTGC--------GTGGGTTCAGGGGATGGAGTGGGACGGAC-  1116

Query 1250  TTTACAAAATATTTATCAAACAACTAGCAAAAAGTGTAAGAGATCGTTATGCCAGATCACCAAAGGAAAAG  1320
                                                                                   
Sbjct 1117  -----------------------------------------------------------------------  1116