Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10086
- Subject:
- NM_001367406.1
- Aligned Length:
- 4023
- Identities:
- 2122
- Gaps:
- 1890
Alignment
Query 1 ATGATGAACCGGACGACCCCCGACCAGGAGCTGGCGCCAGCGTCGGAGCCCGTGTGGGAGCGGCCGTGGTCGGT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGAGGAGATCCGCAGGAGCAGCCAGAGCTGGTCGCTGGCGGCCGACGCGGGCCTACTACAGTTTCTACAGGAAT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCTCACAGCAAACTATCTCTAGGACCCATGAAATCAAGAAACAAGTGGACGGACTAATTCGGGAAACCAAAGCC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ACAGATTGTCGCCTGCATAATGTCTTCAATGACTTCCTTATGCTCTCTAATACCCAGTTCATTGAGAATCGTGT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 ATATGATGAAGAAGTGGAGGAGCCAGTACTCAAGGCTGAGGCAGAAAAAACAGAGCAGGAGAAGACACGAGAGC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGAAAGAAGTAGATCTCATTCCTAAAGTCCAGGAGGCTGTGAACTATGGCTTACAAGTATTGGACAGTGCCTTT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GAGCAACTTGATATCAAAGCAGGAAACTCAGACTCCGAGGAAGATGATGCTAATGGGCGGGTGGAACTGATCCT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TGAACCAAAGGATCTATACATTGATCGTCCTTTACCATATCTCATTGGGTCAAAGCTGTTCATGGAACAAGAAG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 ATGTAGGTCTTGGAGAGCTGTCCAGTGAAGAAGGCTCTGTAGGCAGTGATCGTGGCAGTATTGTGGACACTGAG 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GAAGAGAAAGAAGAGGAGGAGTCAGATGAAGATTTTGCCCATCATAGTGACAATGAACAAAACCGGCACACCAC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 ACAAATGAGTGATGAGGAAGAGGATGATGATGGCTGTGACCTTTTCGCTGACTCTGAGAAGGAGGAGGAAGATA 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TTGAGGACATTGAAGAAAATACTAGACCTAAAAGAAGCAGACCTACATCGTTTGCAGATGAGCTGGCTGCCCGC 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 ATCAAGGGGGATGCCGTGGGTCGAGTGGACGAGGAGCCGACAACCTTACCCTCAGGAGAAGCAAAACCTCGGAA 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 GACACTCAAAGAGAAGAAGGAAAGGAGAACTCCTTCAGACGATGAAGAGGATAACTTATTCGCACCCCCCAAGC 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 TGACCGACGAGGACTTCTCGCCATTTGGCTCTGGAGGTGGCCTGTTCAGTGGGGGCAAGGGGCTCTTTGATGAT 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 GAGGACGAGGAGAGTGACCTCTTCACGGAAGCCCCCCAGGATCGGCAAGCTGGAGCCTCTGTTAAGGAGGAGTC 1184
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1185 TTCATCATCCAAACCTGGAAAGAAAATCCCAGCAGGAGCTGTTTCTGTATTTTTAGGAGACACGGATGTGTTTG 1258
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1259 GTGCTGCCTCCGTTCCATCAATGAAGGAGCCACAGAAGCCTGAGCAGCCCACTCCAAGGAAAAGCCCCTATGGT 1332
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1333 CCCCCTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCTCGGCACCCCACAGCAA 1406
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1407 ACCTTCTAAAACAGGCAAAGTCCAATCCACTGCCGATATCTTTGGTGACGAAGAAGGAGATCTGTTCAAAGAAA 1480
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1481 AAGCCGTAGCATCGCCAGAAGCCACTGTGAGTCAGACAGATGAAAATAAAGCAAGAGCAGAAAAAAAGGTTACC 1554
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1555 TTATCTTCCAGCAAAAATCTCAAGCCCTCATCAGAAACAAAGACTCAAAAAGGCTTATTTTCAGATGAGGAGGA 1628
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1629 CTCTGAGGATTTGTTTTCTTCTCAAAGTGCGAGTAAGTTAAAAGGTGCGTCTCTGCTGCCTGGCAAGCTCCCCA 1702
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1703 CGTTGGTTTCCCTGTTTGATGATGAAGATGAAGAGGATAATCTTTTTGGGGGTACAGCTGCTAAGAAGCAGACA 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ------------------ATGATGAAGATGAAGAGGATAATCTTTTTGGGGGTACAGCTGCTAAGAAGCAGACA 56
Query 1777 TTGTGTCTACAAGCTCAGAGAGAAGAGAAAGCAAAAGCCTCCGAGCTCTCCAAAAAGAAAGCATCTGCCCTGTT 1850
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TTGTCTCTACAAGCTCAGAGAGAAGAGAAAGCAAAAGCCTCCGAGCTCTCCAAAAAGAAAGCATCTGCCCTGTT 130
Query 1851 GTTCAGCAGTGATGAGGAGGACCAGTGGAATATTCCTGCTTCACAGACCCACTTAGCATCTGACAGCAGGTCTA 1924
|||||||||||||||||
Sbjct 131 GTTCAGCAGTGATGAGG--------------------------------------------------------- 147
Query 1925 AAGGAGAACCCAGGGATTCTGGGACCCTCCAGAGCCAGGAGGCCAAGGCTGTGAAAAAGACCAGTCTCTTTGAG 1998
Sbjct 148 -------------------------------------------------------------------------- 147
Query 1999 GAAGACGAAGAAGATGATCTTTTTGCCATTGCCAAGGACAGCCAAAAGAAGACCCAGAGAGTGTCACTCCTCTT 2072
|||||||||||||||||||||||||||||||||||
Sbjct 148 ---------------------------------------AGCCAAAAGAAGACCCAGAGAGTGTCACTCCTCTT 182
Query 2073 TGAAGACGATGTTGATAGCGGAGGCTCTCTGTTTGGCTCTCCTCCCACATCTGTTCCTCCTGCAACAAAGAAAA 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGAAGACGATGTTGATAGCGGAGGCTCTCTGTTTGGCTCTCCTCCCACATCTGTTCCTCCTGCAACAAAGAAAA 256
Query 2147 AAGAGACTGTCTCTGAGGCACCACCTTTGCTGTTCAGCGATGAAGAAGAGAAGGAGGCACAACTTGGAGTGAAG 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AAGAGACTGTCTCTGAGGCACCACCTTTGCTGTTCAGCGATGAAGAAGAGAAGGAGGCACAACTTGGAGTGAAG 330
Query 2221 TCTGTGGATAAGAAGGTTGAGAGTGCCAAGGAGTCATTAAAATTTGGGAGAACTGATGTGGCTGAGTCAGAAAA 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TCTGTGGATAAGAAGGTTGAGAGTGCCAAGGAGTCATTAAAATTTGGGAGAACTGATGTGGCTGAGTCAGAAAA 404
Query 2295 GGAAGGACTTTTGACTAGATCTGCTCAGGAAACAGTCAAGCATTCTGATTTATTTTCTTCATCATCCCCATGGG 2368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GGAAGGACTTTTGACTAGATCTGCTCAGGAAACAGTCAAGCATTCTGATTTATTTTCTTCATCATCCCCATGGG 478
Query 2369 ACAAAGGAACCAAGCCTAGAACCAAAACTGTTCTTAGCTTGTTTGATGAGGAAGAGGATAAAATGGAAGATCAA 2442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACAAAGGAACCAAGCCTAGAACCAAAACTGTTCTTAGCTTGTTTGATGAGGAAGAGGATAAAATGGAAGATCAA 552
Query 2443 AACATTATCCAGGCTCCACAGAAAGAAGTAGGAAAGGGCCGCGATCCTGATGCCCACCCCAAGAGCACAGGTGT 2516
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 553 AACATTATCCAGGCTCCACAGAAAGAAGTAGGAAAGGGCTGCGATCCTGATGCCCACCCCAAGAGCACAGGTGT 626
Query 2517 CTTCCAGGATGAAGAGCTGCTTTTCAGCCACAAGCTCCAAAAGGACAATGACCCAGATGTTGACCTTTTTGCTG 2590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 CTTCCAGGATGAAGAGCTGCTTTTCAGCCACAAGCTCCAAAAGGACAATGACCCAGATGTTGACCTTTTTGCTG 700
Query 2591 GCACCAAAAAAACCAAGCTGTTAGAGCCAAGTGTTGGGAGCCTGTTTGGGGATGATGAAGATGATGATCTTTTC 2664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GCACCAAAAAAACCAAGCTGTTAGAGCCAAGTGTTGGGAGCCTGTTTGGGGATGATGAAGATGATGATCTTTTC 774
Query 2665 AGCTCTGCCAAGTCCCAGCCTTTGGTACAAGAGAAAAAGAGAGTAGTGAAAAAAGACCACTCTGTTGACTCTTT 2738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 775 AGCTCTGCCAAGTCCCAGCCTTTGGTACAAGAGAAAAAGAGAGTAGTGAAAAAAGACCACTCTGTTAACTCTTT 848
Query 2739 CAAAAACCAGAAACATCCTGAATCCATTCAAGGTAGTAAAGAAAAAGGCATATGGAAGCCGGAAACACCTCAGG 2812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CAAAAACCAGAAACATCCTGAATCCATTCAAGGTAGTAAAGAAAAAGGCATATGGAAGCCGGAAACACCTCAGG 922
Query 2813 ACTCATCAGGTCTCGCTCCATTTAAAACCAAAGAACCATCCACTCGGATCGGGAAGATACAAGCAAATTTAGCG 2886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 ACTCATCAGGTCTCGCTCCATTTAAAACCAAAGAACCATCCACTCGGATCGGGAAGATACAAGCAAATTTAGCG 996
Query 2887 ATCAACCCAGCGGCCTTGCTGCCCACAGCGGCTTCCCAGATCTCTGAAGTAAAGCCTGTTTTGCCAGAATTGGC 2960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ATCAACCCAGCGGCCTTGCTGCCCACAGCGGCTTCCCAGATCTCTGAAGTAAAGCCTGTTTTGCCAGAATTGGC 1070
Query 2961 TTTTCCTTCATCTGAACACAGAAGGAGCTACGGTCTGGAAAGTGTGCCTGTCCTTCCCGGGAGTGGGGAGGCCG 3034
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TTTTCCTTCATCTGAACACAGAAGGAGCCACGGTCTGGAAAGTGTGCCTGTCCTTCCCGGGAGTGGGGAGGCCG 1144
Query 3035 GTGTGAGTTTTGATCTTCCAGCTCAGGCAGACACCTTACACAGTGCAAACAAGAGCCGTGTCAAGATGAGAGGG 3108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 GTGTGAGTTTTGATCTTCCAGCTCAGGCAGACACCTTACACAGTGCAAACAAGAGCCGTGTCAAGATGAGAGGG 1218
Query 3109 AAGCGTAGACCGCAGACCCGTGCAGCTAGGCGGCTGGCTGCTCAGGAGTCCAGCGAGACTGAGGACATGAGCGT 3182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1219 AAGCGTAGACCGCAGACCCGTGCAGCTAGGCGGCTGGCTGCTCAGGAGTCCAGCGAGGCTGAGGACATGAGCGT 1292
Query 3183 CCCCAGAGGACCCATTGCACAGTGGGCTGATGGCGCCATTTCCCCAAATGGCCATCGGCCACAGCTCAGAGCAG 3256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 CCCCAGAGGACCCATTGCACAGTGGGCTGATGGCGCCATTTCCCCAAATGGCCATCGGCCACAGCTCAGAGCAG 1366
Query 3257 CCAGTGGAGAAGACAGCACTGAGGAGGCCCTGGCAGCTGCCGCTGCACCTTGGGAAGGTGGTCCTGTGCCTGGA 3330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 CCAGTGGAGAAGACAGCACTGAGGAGGCCCTGGCAGCTGCCGCTGCACCTTGGGAAGGTGGTCCTGTGCCTGGA 1440
Query 3331 GTGGACAGAAGCCCCTTTGCAAAGTCTCTGGGTCATTCCAGAGGGGAGGCTGACCTTTTTGATTCTGGGGACAT 3404
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GTGGACACAAGCCCCTTTGCAAAGTCTCTGGGTCATTCCAGAGGGGAGGCTGACCTTTTTGATTCTGGGGACAT 1514
Query 3405 CTTTTCCACGGGCACTGGATCTCAGTCTGTGGAGAGAACAAAACCCAAGGCAAAGATAGCAGAGAATCCTGCCA 3478
.||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 TTTTTCCACGGGCACTGGATCTCAGTCCGTGGAGAGAACAAAACCCAAGGCAAAGATAGCAGAGAATCCTGCCA 1588
Query 3479 ACCCACCAGTGGGTGGTAAAGCAAAGAGCCCCATGTTTCCTGCTCTAGGTGAGGCCAGCAGTGATGATGATCTC 3552
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1589 ACCCACCAGTGGGTGGTAAAGCAAAGAGCCCCATGTTTCCTGCTCTAGGCGAGGCCAGCAGTGATGATGATCTC 1662
Query 3553 TTTCAGTCTGCTAAACCAAAACCAGCAAAGAAAACAAATCCCTTTCCTCTCCTGGAAGATGAGGATGACCTCTT 3626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TTTCAGTCTGCTAAACCAAAACCAGCAAAGAAAACAAATCCCTTTCCTCTCCTGGAAGATGAGGATGACCTCTT 1736
Query 3627 TACAGATCAGAAAGTCAAGAAGAATGAGACAAAATCCAATAGTCAGCAGGATGTCATATTAACAACACAAGATA 3700
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1737 TACAGATCAGAAAGTCAAGAAGAATGAGACAAAATCCAGTAGTCAGCAGGATGTCATATTAACAACACAAGATA 1810
Query 3701 TTTTTGAGGATGATATATTTGCTACGGAAGCAATTAAACCCTCTCAGAAAACCAGAGAGAAGGAGAAAACATTG 3774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 TTTTTGAGGATGATATATTTGCTACGGAAGCAATTAAACCCTCTCAGAAAACCAGAGAGAAGGAGAAAACATTG 1884
Query 3775 GAATCTAATTTATTTGATGATAACATTGATATCTTTGCTGACTTAACTGTAAAACCAAAAGAAAAGTCCAAAAA 3848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1885 GAATCTAATTTATTTGATGATAACATTGATATCTTTGCTGACTTAACTGTAAAACCAAAAGAAAAGTCCAAAAA 1958
Query 3849 GAAAGTGGAAGCCAAGTCTATATTTGATGATGATATGGATGACATCTTCTCCTCTGGTATCCAGGCTAAGACAA 3922
||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1959 GAAAGTGGAAGCCAAGTCTATATTTGATGATGATATGGATGACATCTTCTCCACTGGTATCCAGGCTAAGACAA 2032
Query 3923 CCAAACCAAAAAGCCGATCTGCACAGGCCGCACCTGAACCAAGATTTGAACACAAGGTGTCCAACATCTTTGAT 3996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 CCAAACCAAAAAGCCGATCTGCACAGGCCGCACCTGAACCAAGATTTGAACACAAGGTGTCCAACATCTTTGAT 2106
Query 3997 GATCCCCTGAATGCCTTTGGAGGCCAG 4023
|||||||||||||||||||||||||||
Sbjct 2107 GATCCCCTGAATGCCTTTGGAGGCCAG 2133
