Construct: ORF ccsbBroadEn_10086
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010232.1_s300c1, BRDN0000457369
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WASHC2A (387680)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 387680 | WASHC2A | WASH complex subunit 2A | NM_001005751.3 | 99.9% | 99.9% | 2989C>T |
2 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001330074.2 | 99.2% | 98.6% | (many diffs) |
3 | human | 387680 | WASHC2A | WASH complex subunit 2A | NM_001291398.1 | 98.4% | 98.3% | 2811_2812ins63;2926C>T |
4 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_005269806.3 | 98.1% | 98% | 931_932ins72;2917C>T |
5 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_005269807.3 | 97.8% | 97.7% | 1546_1547ins87;2902C>T |
6 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_015262.3 | 97.7% | 97% | (many diffs) |
7 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367393.1 | 97.5% | 96.9% | (many diffs) |
8 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367403.1 | 97.4% | 96.7% | (many diffs) |
9 | human | 253725 | WASHC2C | WASH complex subunit 2C | XM_011539568.2 | 97.1% | 96.5% | (many diffs) |
10 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016227.1 | 96.9% | 96.8% | 2687_2688ins123;2866C>T |
11 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016228.1 | 96.6% | 96.4% | 931_932ins72;2739_2740ins63;2854C>T |
12 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016229.1 | 96.2% | 96.1% | 1546_1547ins87;2724_2725ins63;2839C>T |
13 | human | 253725 | WASHC2C | WASH complex subunit 2C | XM_017016014.2 | 96.2% | 95.6% | (many diffs) |
14 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_006717831.3 | 96.1% | 96.1% | 2138_2139ins153;2836C>T |
15 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367400.1 | 95.9% | 95.2% | (many diffs) |
16 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016230.1 | 95.6% | 95.6% | 352_353ins174;2815C>T |
17 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367401.1 | 95.5% | 95% | (many diffs) |
18 | human | 253725 | WASHC2C | WASH complex subunit 2C | XM_011539569.2 | 95.4% | 94.8% | (many diffs) |
19 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367404.1 | 95.4% | 94.7% | (many diffs) |
20 | human | 387680 | WASHC2A | WASH complex subunit 2A | NM_001330102.2 | 95.3% | 95.3% | 2688_2689ins186;2803C>T |
21 | human | 253725 | WASHC2C | WASH complex subunit 2C | XM_017016017.2 | 95.3% | 94.7% | (many diffs) |
22 | human | 253725 | WASHC2C | WASH complex subunit 2C | XM_011539570.3 | 94.9% | 94.3% | (many diffs) |
23 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001169106.2 | 94.6% | 94.1% | (many diffs) |
24 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016231.1 | 94.6% | 94.5% | 2138_2139ins153;2658_2659ins63;2773C>T |
25 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016232.1 | 94.4% | 94.3% | (many diffs) |
26 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367395.1 | 94.3% | 93.6% | (many diffs) |
27 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367408.1 | 93.9% | 93.2% | (many diffs) |
28 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367396.1 | 93.6% | 92.9% | (many diffs) |
29 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367397.1 | 93.6% | 93% | (many diffs) |
30 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367394.1 | 92.8% | 92.2% | (many diffs) |
31 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367411.1 | 92.8% | 92.2% | (many diffs) |
32 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_006717832.3 | 92.8% | 92.6% | (many diffs) |
33 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001169107.2 | 92.1% | 91.4% | (many diffs) |
34 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367409.1 | 91.3% | 90.6% | (many diffs) |
35 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367410.1 | 91.2% | 90.6% | (many diffs) |
36 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367415.1 | 90.8% | 90.2% | (many diffs) |
37 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_011539786.2 | 90% | 90% | 2687_2688ins399 |
38 | human | 387680 | WASHC2A | WASH complex subunit 2A | XR_001747105.2 | 89.7% | (many diffs) | |
39 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367416.1 | 89.4% | 88.8% | (many diffs) |
40 | human | 387680 | WASHC2A | WASH complex subunit 2A | XR_002956976.1 | 88.1% | (many diffs) | |
41 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367413.1 | 86.4% | 85.8% | (many diffs) |
42 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367399.1 | 86.1% | 85.6% | (many diffs) |
43 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016233.1 | 85.5% | 85.5% | 0_1ins579;2410C>T |
44 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367412.1 | 84.9% | 84.3% | (many diffs) |
45 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367402.1 | 83.4% | 82.7% | (many diffs) |
46 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367405.1 | 83.4% | 82.7% | (many diffs) |
47 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367407.1 | 83.4% | 82.7% | (many diffs) |
48 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367414.1 | 83.4% | 82.7% | (many diffs) |
49 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367398.1 | 83.1% | 82.4% | (many diffs) |
50 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016234.1 | 81.6% | 81.5% | (many diffs) |
51 | human | 253725 | WASHC2C | WASH complex subunit 2C | NR_159966.1 | 77.8% | (many diffs) | |
52 | human | 253725 | WASHC2C | WASH complex subunit 2C | XR_002956972.1 | 63.3% | (many diffs) | |
53 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_017016235.1 | 52.9% | 50.1% | 0_1ins1720;147_148ins170;1099C>T |
54 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_024447991.1 | 52.9% | 50.1% | 0_1ins1720;147_148ins170;1099C>T |
55 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_024447992.1 | 52.9% | 50.1% | 0_1ins1720;147_148ins170;1099C>T |
56 | human | 253725 | WASHC2C | WASH complex subunit 2C | XM_011539572.2 | 52.7% | 49.5% | (many diffs) |
57 | human | 253725 | WASHC2C | WASH complex subunit 2C | NM_001367406.1 | 52.7% | 49.7% | (many diffs) |
58 | human | 253725 | WASHC2C | WASH complex subunit 2C | XM_017016025.1 | 52.7% | 49.7% | (many diffs) |
59 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_005269810.3 | 51.8% | 49.4% | (many diffs) |
60 | human | 253725 | WASHC2C | WASH complex subunit 2C | XM_011539573.3 | 51.5% | 49% | (many diffs) |
61 | human | 387680 | WASHC2A | WASH complex subunit 2A | XM_024447993.1 | 51.4% | 48.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4092
- ORF length:
- 4023
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATGAACCGG ACGACCCCCG ACCAGGAGCT GGCGCCAGCG TCGGAGCCCG 121 TGTGGGAGCG GCCGTGGTCG GTGGAGGAGA TCCGCAGGAG CAGCCAGAGC TGGTCGCTGG 181 CGGCCGACGC GGGCCTACTA CAGTTTCTAC AGGAATTCTC ACAGCAAACT ATCTCTAGGA 241 CCCATGAAAT CAAGAAACAA GTGGACGGAC TAATTCGGGA AACCAAAGCC ACAGATTGTC 301 GCCTGCATAA TGTCTTCAAT GACTTCCTTA TGCTCTCTAA TACCCAGTTC ATTGAGAATC 361 GTGTATATGA TGAAGAAGTG GAGGAGCCAG TACTCAAGGC TGAGGCAGAA AAAACAGAGC 421 AGGAGAAGAC ACGAGAGCAG AAAGAAGTAG ATCTCATTCC TAAAGTCCAG GAGGCTGTGA 481 ACTATGGCTT ACAAGTATTG GACAGTGCCT TTGAGCAACT TGATATCAAA GCAGGAAACT 541 CAGACTCCGA GGAAGATGAT GCTAATGGGC GGGTGGAACT GATCCTTGAA CCAAAGGATC 601 TATACATTGA TCGTCCTTTA CCATATCTCA TTGGGTCAAA GCTGTTCATG GAACAAGAAG 661 ATGTAGGTCT TGGAGAGCTG TCCAGTGAAG AAGGCTCTGT AGGCAGTGAT CGTGGCAGTA 721 TTGTGGACAC TGAGGAAGAG AAAGAAGAGG AGGAGTCAGA TGAAGATTTT GCCCATCATA 781 GTGACAATGA ACAAAACCGG CACACCACAC AAATGAGTGA TGAGGAAGAG GATGATGATG 841 GCTGTGACCT TTTCGCTGAC TCTGAGAAGG AGGAGGAAGA TATTGAGGAC ATTGAAGAAA 901 ATACTAGACC TAAAAGAAGC AGACCTACAT CGTTTGCAGA TGAGCTGGCT GCCCGCATCA 961 AGGGGGATGC CGTGGGTCGA GTGGACGAGG AGCCGACAAC CTTACCCTCA GGAGAAGCAA 1021 AACCTCGGAA GACACTCAAA GAGAAGAAGG AAAGGAGAAC TCCTTCAGAC GATGAAGAGG 1081 ATAACTTATT CGCACCCCCC AAGCTGACCG ACGAGGACTT CTCGCCATTT GGCTCTGGAG 1141 GTGGCCTGTT CAGTGGGGGC AAGGGGCTCT TTGATGATGA GGACGAGGAG AGTGACCTCT 1201 TCACGGAAGC CCCCCAGGAT CGGCAAGCTG GAGCCTCTGT TAAGGAGGAG TCTTCATCAT 1261 CCAAACCTGG AAAGAAAATC CCAGCAGGAG CTGTTTCTGT ATTTTTAGGA GACACGGATG 1321 TGTTTGGTGC TGCCTCCGTT CCATCAATGA AGGAGCCACA GAAGCCTGAG CAGCCCACTC 1381 CAAGGAAAAG CCCCTATGGT CCCCCTCCCA CTGGCCTCTT TGATGATGAT GATGGTGATG 1441 ATGATGACGA CTTTTTCTCG GCACCCCACA GCAAACCTTC TAAAACAGGC AAAGTCCAAT 1501 CCACTGCCGA TATCTTTGGT GACGAAGAAG GAGATCTGTT CAAAGAAAAA GCCGTAGCAT 1561 CGCCAGAAGC CACTGTGAGT CAGACAGATG AAAATAAAGC AAGAGCAGAA AAAAAGGTTA 1621 CCTTATCTTC CAGCAAAAAT CTCAAGCCCT CATCAGAAAC AAAGACTCAA AAAGGCTTAT 1681 TTTCAGATGA GGAGGACTCT GAGGATTTGT TTTCTTCTCA AAGTGCGAGT AAGTTAAAAG 1741 GTGCGTCTCT GCTGCCTGGC AAGCTCCCCA CGTTGGTTTC CCTGTTTGAT GATGAAGATG 1801 AAGAGGATAA TCTTTTTGGG GGTACAGCTG CTAAGAAGCA GACATTGTGT CTACAAGCTC 1861 AGAGAGAAGA GAAAGCAAAA GCCTCCGAGC TCTCCAAAAA GAAAGCATCT GCCCTGTTGT 1921 TCAGCAGTGA TGAGGAGGAC CAGTGGAATA TTCCTGCTTC ACAGACCCAC TTAGCATCTG 1981 ACAGCAGGTC TAAAGGAGAA CCCAGGGATT CTGGGACCCT CCAGAGCCAG GAGGCCAAGG 2041 CTGTGAAAAA GACCAGTCTC TTTGAGGAAG ACGAAGAAGA TGATCTTTTT GCCATTGCCA 2101 AGGACAGCCA AAAGAAGACC CAGAGAGTGT CACTCCTCTT TGAAGACGAT GTTGATAGCG 2161 GAGGCTCTCT GTTTGGCTCT CCTCCCACAT CTGTTCCTCC TGCAACAAAG AAAAAAGAGA 2221 CTGTCTCTGA GGCACCACCT TTGCTGTTCA GCGATGAAGA AGAGAAGGAG GCACAACTTG 2281 GAGTGAAGTC TGTGGATAAG AAGGTTGAGA GTGCCAAGGA GTCATTAAAA TTTGGGAGAA 2341 CTGATGTGGC TGAGTCAGAA AAGGAAGGAC TTTTGACTAG ATCTGCTCAG GAAACAGTCA 2401 AGCATTCTGA TTTATTTTCT TCATCATCCC CATGGGACAA AGGAACCAAG CCTAGAACCA 2461 AAACTGTTCT TAGCTTGTTT GATGAGGAAG AGGATAAAAT GGAAGATCAA AACATTATCC 2521 AGGCTCCACA GAAAGAAGTA GGAAAGGGCC GCGATCCTGA TGCCCACCCC AAGAGCACAG 2581 GTGTCTTCCA GGATGAAGAG CTGCTTTTCA GCCACAAGCT CCAAAAGGAC AATGACCCAG 2641 ATGTTGACCT TTTTGCTGGC ACCAAAAAAA CCAAGCTGTT AGAGCCAAGT GTTGGGAGCC 2701 TGTTTGGGGA TGATGAAGAT GATGATCTTT TCAGCTCTGC CAAGTCCCAG CCTTTGGTAC 2761 AAGAGAAAAA GAGAGTAGTG AAAAAAGACC ACTCTGTTGA CTCTTTCAAA AACCAGAAAC 2821 ATCCTGAATC CATTCAAGGT AGTAAAGAAA AAGGCATATG GAAGCCGGAA ACACCTCAGG 2881 ACTCATCAGG TCTCGCTCCA TTTAAAACCA AAGAACCATC CACTCGGATC GGGAAGATAC 2941 AAGCAAATTT AGCGATCAAC CCAGCGGCCT TGCTGCCCAC AGCGGCTTCC CAGATCTCTG 3001 AAGTAAAGCC TGTTTTGCCA GAATTGGCTT TTCCTTCATC TGAACACAGA AGGAGCTACG 3061 GTCTGGAAAG TGTGCCTGTC CTTCCCGGGA GTGGGGAGGC CGGTGTGAGT TTTGATCTTC 3121 CAGCTCAGGC AGACACCTTA CACAGTGCAA ACAAGAGCCG TGTCAAGATG AGAGGGAAGC 3181 GTAGACCGCA GACCCGTGCA GCTAGGCGGC TGGCTGCTCA GGAGTCCAGC GAGACTGAGG 3241 ACATGAGCGT CCCCAGAGGA CCCATTGCAC AGTGGGCTGA TGGCGCCATT TCCCCAAATG 3301 GCCATCGGCC ACAGCTCAGA GCAGCCAGTG GAGAAGACAG CACTGAGGAG GCCCTGGCAG 3361 CTGCCGCTGC ACCTTGGGAA GGTGGTCCTG TGCCTGGAGT GGACAGAAGC CCCTTTGCAA 3421 AGTCTCTGGG TCATTCCAGA GGGGAGGCTG ACCTTTTTGA TTCTGGGGAC ATCTTTTCCA 3481 CGGGCACTGG ATCTCAGTCT GTGGAGAGAA CAAAACCCAA GGCAAAGATA GCAGAGAATC 3541 CTGCCAACCC ACCAGTGGGT GGTAAAGCAA AGAGCCCCAT GTTTCCTGCT CTAGGTGAGG 3601 CCAGCAGTGA TGATGATCTC TTTCAGTCTG CTAAACCAAA ACCAGCAAAG AAAACAAATC 3661 CCTTTCCTCT CCTGGAAGAT GAGGATGACC TCTTTACAGA TCAGAAAGTC AAGAAGAATG 3721 AGACAAAATC CAATAGTCAG CAGGATGTCA TATTAACAAC ACAAGATATT TTTGAGGATG 3781 ATATATTTGC TACGGAAGCA ATTAAACCCT CTCAGAAAAC CAGAGAGAAG GAGAAAACAT 3841 TGGAATCTAA TTTATTTGAT GATAACATTG ATATCTTTGC TGACTTAACT GTAAAACCAA 3901 AAGAAAAGTC CAAAAAGAAA GTGGAAGCCA AGTCTATATT TGATGATGAT ATGGATGACA 3961 TCTTCTCCTC TGGTATCCAG GCTAAGACAA CCAAACCAAA AAGCCGATCT GCACAGGCCG 4021 CACCTGAACC AAGATTTGAA CACAAGGTGT CCAACATCTT TGATGATCCC CTGAATGCCT 4081 TTGGAGGCCA GTTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat 4141 caatttgttg caacgaac