Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10086
- Subject:
- XM_005269810.3
- Aligned Length:
- 4032
- Identities:
- 2089
- Gaps:
- 1914
Alignment
Query 1 ATGATGAACCGGACGACCCCCGACCAGGAGCTGGCGCCAGCGTCGGAGCCCGTGTGGGAGCGGCCGTGGTCGGT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGAGGAGATCCGCAGGAGCAGCCAGAGCTGGTCGCTGGCGGCCGACGCGGGCCTACTACAGTTTCTACAGGAAT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCTCACAGCAAACTATCTCTAGGACCCATGAAATCAAGAAACAAGTGGACGGACTAATTCGGGAAACCAAAGCC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ACAGATTGTCGCCTGCATAATGTCTTCAATGACTTCCTTATGCTCTCTAATACCCAGTTCATTGAGAATCGTGT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 ATATGATGAAGAAGTGGAGGAGCCAGTACTCAAGGCTGAGGCAGAAAAAACAGAGCAGGAGAAGACACGAGAGC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGAAAGAAGTAGATCTCATTCCTAAAGTCCAGGAGGCTGTGAACTATGGCTTACAAGTATTGGACAGTGCCTTT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GAGCAACTTGATATCAAAGCAGGAAACTCAGACTCCGAGGAAGATGATGCTAATGGGCGGGTGGAACTGATCCT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TGAACCAAAGGATCTATACATTGATCGTCCTTTACCATATCTCATTGGGTCAAAGCTGTTCATGGAACAAGAAG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 ATGTAGGTCTTGGAGAGCTGTCCAGTGAAGAAGGCTCTGTAGGCAGTGATCGTGGCAGTATTGTGGACACTGAG 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GAAGAGAAAGAAGAGGAGGAGTCAGATGAAGATTTTGCCCATCATAGTGACAATGAACAAAACCGGCACACCAC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 ACAAATGAGTGATGAGGAAGAGGATGATGATGGCTGTGACCTTTTCGCTGACTCTGAGAAGGAGGAGGAAGATA 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TTGAGGACATTGAAGAAAATACTAGACCTAAAAGAAGCAGACCTACATCGTTTGCAGATGAGCTGGCTGCCCGC 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 ATCAAGGGGGATGCCGTGGGTCGAGTGGACGAGGAGCCGACAACCTTACCCTCAGGAGAAGCAAAACCTCGGAA 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 GACACTCAAAGAGAAGAAGGAAAGGAGAACTCCTTCAGACGATGAAGAGGATAACTTATTCGCACCCCCCAAGC 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 TGACCGACGAGGACTTCTCGCCATTTGGCTCTGGAGGTGGCCTGTTCAGTGGGGGCAAGGGGCTCTTTGATGAT 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 GAGGACGAGGAGAGTGACCTCTTCACGGAAGCCCCCCAGGATCGGCAAGCTGGAGCCTCTGTTAAGGAGGAGTC 1184
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1185 TTCATCATCCAAACCTGGAAAGAAAATCCCAGCAGGAGCTGTTTCTGTATTTTTAGGAGACACGGATGTGTTTG 1258
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1259 GTGCTGCCTCCGTTCCATCAATGAAGGAGCCACAGAAGCCTGAGCAGCCCACTCCAAGGAAAAGCCCCTATGGT 1332
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1333 CCCCCTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCTCGGCACCCCACAGCAA 1406
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1407 ACCTTCTAAAACAGGCAAAGTCCAATCCACTGCCGATATCTTTGGTGACGAAGAAGGAGATCTGTTCAAAGAAA 1480
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1481 AAGCCGTAGCATCGCCAGAAGCCACTGTGAGTCAGACAGATGAAAATAAAGCAAGAGCAGAAAAAAAGGTTACC 1554
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1555 TTATCTTCCAGCAAAAATCTCAAGCCCTCATCAGAAACAAAGACTCAAAAAGGCTTATTTTCAGATGAGGAGGA 1628
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1629 CTCTGAGGATTTGTTTTCTTCTCAAAGTGCGAGTAAGTTAAAAGGTGCGTCTCTGCTGCCTGGCAAGCTCCCCA 1702
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1703 CGTTGGTTTCCCTGTTTGATGATGAAGATGAAGAGGATAATCTTTTTGGGGGTACAGCTGCTAAGAAGCAGACA 1776
||.||||||||| |...|||.|||.| ||||
Sbjct 1 ------------------------------------ATGATCTTTTTG------CCATTGCCAAGGA-CAGA-- 29
Query 1777 TTGTGTCTACAAGCTCAGAGAGAAGAGAAAGCAAAAGCCTCCGA--GCTCTCCAAAAAGAAAGCATCTGCCCTG 1848
||||..|| .|||||.| |.||.|.|| |
Sbjct 30 -------TACATCCT---------------------ACCTCCTATTGTTCCCGAA------------------G 57
Query 1849 TTGT---TCAGCAGTGATGAGGAGGACCAGTGGAA---TATTCCTGCTTCACAGACCCACTTAGCATCTGACAG 1916
|||| ||| |||..||.|.| ||||| .||||.|.| ||| ||.
Sbjct 58 TTGTCTGTCA--AGTTTTGTGTA-------TGGAAAGTAATTCATAC------------CTT---------CAT 101
Query 1917 CAGGTCT-AAAGGAGAACCCAGGGATTCTGGGACCCTCCAGAGCCAGGAGGCCAAGGCTGTGAAAAAGACCAGT 1989
|||.||| ||| |||| |||.| |.|.||
Sbjct 102 CAGATCTCAAA--AGAA---------------------------------------GCTTT---ACACAC---- 127
Query 1990 CTCTTTGAGGAAGACGAAGAAGATGATCTTTTTGCCATTGCCAAGGACAGCCAAAAGAAGACCCAGAGAGTGTC 2063
|.|.|||||||.|| ||||||||||||||||||||||||||
Sbjct 128 -----------ACAAGAAGAAGTTG-----------------------AGCCAAAAGAAGACCCAGAGAGTGTC 167
Query 2064 ACTCCTCTTTGAAGACGATGTTGATAGCGGAGGCTCTCTGTTTGGCTCTCCTCCCACATCTGTTCCTCCTGCAA 2137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 ACTCCTCTTTGAAGACGATGTTGATAGCGGAGGCTCTCTGTTTGGCTCTCCTCCCACATCTGTTCCTCCTGCAA 241
Query 2138 CAAAGAAAAAAGAGACTGTCTCTGAGGCACCACCTTTGCTGTTCAGCGATGAAGAAGAGAAGGAGGCACAACTT 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CAAAGAAAAAAGAGACTGTCTCTGAGGCACCACCTTTGCTGTTCAGCGATGAAGAAGAGAAGGAGGCACAACTT 315
Query 2212 GGAGTGAAGTCTGTGGATAAGAAGGTTGAGAGTGCCAAGGAGTCATTAAAATTTGGGAGAACTGATGTGGCTGA 2285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GGAGTGAAGTCTGTGGATAAGAAGGTTGAGAGTGCCAAGGAGTCATTAAAATTTGGGAGAACTGATGTGGCTGA 389
Query 2286 GTCAGAAAAGGAAGGACTTTTGACTAGATCTGCTCAGGAAACAGTCAAGCATTCTGATTTATTTTCTTCATCAT 2359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GTCAGAAAAGGAAGGACTTTTGACTAGATCTGCTCAGGAAACAGTCAAGCATTCTGATTTATTTTCTTCATCAT 463
Query 2360 CCCCATGGGACAAAGGAACCAAGCCTAGAACCAAAACTGTTCTTAGCTTGTTTGATGAGGAAGAGGATAAAATG 2433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CCCCATGGGACAAAGGAACCAAGCCTAGAACCAAAACTGTTCTTAGCTTGTTTGATGAGGAAGAGGATAAAATG 537
Query 2434 GAAGATCAAAACATTATCCAGGCTCCACAGAAAGAAGTAGGAAAGGGCCGCGATCCTGATGCCCACCCCAAGAG 2507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAAGATCAAAACATTATCCAGGCTCCACAGAAAGAAGTAGGAAAGGGCCGCGATCCTGATGCCCACCCCAAGAG 611
Query 2508 CACAGGTGTCTTCCAGGATGAAGAGCTGCTTTTCAGCCACAAGCTCCAAAAGGACAATGACCCAGATGTTGACC 2581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CACAGGTGTCTTCCAGGATGAAGAGCTGCTTTTCAGCCACAAGCTCCAAAAGGACAATGACCCAGATGTTGACC 685
Query 2582 TTTTTGCTGGCACCAAAAAAACCAAGCTGTTAGAGCCAAGTGTTGGGAGCCTGTTTGGGGATGATGAAGATGAT 2655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTTTTGCTGGCACCAAAAAAACCAAGCTGTTAGAGCCAAGTGTTGGGAGCCTGTTTGGGGATGATGAAGATGAT 759
Query 2656 GATCTTTTCAGCTCTGCCAAGTCCCAGCCTTTGGTACAAGAGAAAAAGAGAGTAGTGAAAAAAGACCACTCTGT 2729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GATCTTTTCAGCTCTGCCAAGTCCCAGCCTTTGGTACAAGAGAAAAAGAGAGTAGTGAAAAAAGACCACTCTGT 833
Query 2730 TGACTCTTTCAAAAACCAGAAACATCCTGAATCCATTCAAGGTAGTAAAGAAAAAGGCATATGGAAGCCGGAAA 2803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGACTCTTTCAAAAACCAGAAACATCCTGAATCCATTCAAGGTAGTAAAGAAAAAGGCATATGGAAGCCGGAAA 907
Query 2804 CACCTCAGGACTCATCAGGTCTCGCTCCATTTAAAACCAAAGAACCATCCACTCGGATCGGGAAGATACAAGCA 2877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CACCTCAGGACTCATCAGGTCTCGCTCCATTTAAAACCAAAGAACCATCCACTCGGATCGGGAAGATACAAGCA 981
Query 2878 AATTTAGCGATCAACCCAGCGGCCTTGCTGCCCACAGCGGCTTCCCAGATCTCTGAAGTAAAGCCTGTTTTGCC 2951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 AATTTAGCGATCAACCCAGCGGCCTTGCTGCCCACAGCGGCTTCCCAGATCTCTGAAGTAAAGCCTGTTTTGCC 1055
Query 2952 AGAATTGGCTTTTCCTTCATCTGAACACAGAAGGAGCTACGGTCTGGAAAGTGTGCCTGTCCTTCCCGGGAGTG 3025
|||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1056 AGAATTGGCTTTTCCTTCATCTGAACACAGAAGGAGCCACGGTCTGGAAAGTGTGCCTGTCCTTCCCGGGAGTG 1129
Query 3026 GGGAGGCCGGTGTGAGTTTTGATCTTCCAGCTCAGGCAGACACCTTACACAGTGCAAACAAGAGCCGTGTCAAG 3099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GGGAGGCCGGTGTGAGTTTTGATCTTCCAGCTCAGGCAGACACCTTACACAGTGCAAACAAGAGCCGTGTCAAG 1203
Query 3100 ATGAGAGGGAAGCGTAGACCGCAGACCCGTGCAGCTAGGCGGCTGGCTGCTCAGGAGTCCAGCGAGACTGAGGA 3173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 ATGAGAGGGAAGCGTAGACCGCAGACCCGTGCAGCTAGGCGGCTGGCTGCTCAGGAGTCCAGCGAGACTGAGGA 1277
Query 3174 CATGAGCGTCCCCAGAGGACCCATTGCACAGTGGGCTGATGGCGCCATTTCCCCAAATGGCCATCGGCCACAGC 3247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CATGAGCGTCCCCAGAGGACCCATTGCACAGTGGGCTGATGGCGCCATTTCCCCAAATGGCCATCGGCCACAGC 1351
Query 3248 TCAGAGCAGCCAGTGGAGAAGACAGCACTGAGGAGGCCCTGGCAGCTGCCGCTGCACCTTGGGAAGGTGGTCCT 3321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 TCAGAGCAGCCAGTGGAGAAGACAGCACTGAGGAGGCCCTGGCAGCTGCCGCTGCACCTTGGGAAGGTGGTCCT 1425
Query 3322 GTGCCTGGAGTGGACAGAAGCCCCTTTGCAAAGTCTCTGGGTCATTCCAGAGGGGAGGCTGACCTTTTTGATTC 3395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 GTGCCTGGAGTGGACAGAAGCCCCTTTGCAAAGTCTCTGGGTCATTCCAGAGGGGAGGCTGACCTTTTTGATTC 1499
Query 3396 TGGGGACATCTTTTCCACGGGCACTGGATCTCAGTCTGTGGAGAGAACAAAACCCAAGGCAAAGATAGCAGAGA 3469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGGGGACATCTTTTCCACGGGCACTGGATCTCAGTCTGTGGAGAGAACAAAACCCAAGGCAAAGATAGCAGAGA 1573
Query 3470 ATCCTGCCAACCCACCAGTGGGTGGTAAAGCAAAGAGCCCCATGTTTCCTGCTCTAGGTGAGGCCAGCAGTGAT 3543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 ATCCTGCCAACCCACCAGTGGGTGGTAAAGCAAAGAGCCCCATGTTTCCTGCTCTAGGTGAGGCCAGCAGTGAT 1647
Query 3544 GATGATCTCTTTCAGTCTGCTAAACCAAAACCAGCAAAGAAAACAAATCCCTTTCCTCTCCTGGAAGATGAGGA 3617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 GATGATCTCTTTCAGTCTGCTAAACCAAAACCAGCAAAGAAAACAAATCCCTTTCCTCTCCTGGAAGATGAGGA 1721
Query 3618 TGACCTCTTTACAGATCAGAAAGTCAAGAAGAATGAGACAAAATCCAATAGTCAGCAGGATGTCATATTAACAA 3691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 TGACCTCTTTACAGATCAGAAAGTCAAGAAGAATGAGACAAAATCCAATAGTCAGCAGGATGTCATATTAACAA 1795
Query 3692 CACAAGATATTTTTGAGGATGATATATTTGCTACGGAAGCAATTAAACCCTCTCAGAAAACCAGAGAGAAGGAG 3765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CACAAGATATTTTTGAGGATGATATATTTGCTACGGAAGCAATTAAACCCTCTCAGAAAACCAGAGAGAAGGAG 1869
Query 3766 AAAACATTGGAATCTAATTTATTTGATGATAACATTGATATCTTTGCTGACTTAACTGTAAAACCAAAAGAAAA 3839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 AAAACATTGGAATCTAATTTATTTGATGATAACATTGATATCTTTGCTGACTTAACTGTAAAACCAAAAGAAAA 1943
Query 3840 GTCCAAAAAGAAAGTGGAAGCCAAGTCTATATTTGATGATGATATGGATGACATCTTCTCCTCTGGTATCCAGG 3913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 GTCCAAAAAGAAAGTGGAAGCCAAGTCTATATTTGATGATGATATGGATGACATCTTCTCCTCTGGTATCCAGG 2017
Query 3914 CTAAGACAACCAAACCAAAAAGCCGATCTGCACAGGCCGCACCTGAACCAAGATTTGAACACAAGGTGTCCAAC 3987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 CTAAGACAACCAAACCAAAAAGCCGATCTGCACAGGCCGCACCTGAACCAAGATTTGAACACAAGGTGTCCAAC 2091
Query 3988 ATCTTTGATGATCCCCTGAATGCCTTTGGAGGCCAG 4023
||||||||||||||||||||||||||||||||||||
Sbjct 2092 ATCTTTGATGATCCCCTGAATGCCTTTGGAGGCCAG 2127
