Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10303
- Subject:
- XR_935062.2
- Aligned Length:
- 4257
- Identities:
- 167
- Gaps:
- 4065
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTAGCCTCACACCCCTTTTACTGGCCATACAGAAAAGAAGCAAGCAAACTGTGGAATTTTTACTAACAAAAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCAAATGCAAACGCATTTAATGAGTCTAAATGCACAGCCCTCATGCTTGCCATATGTGAAGGCTCATCAGAGA 148
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 149 TAGTCGGCATGCTTCTTCAGCAAAATGTTGACGTCTTTGCTGAAGACATACATGGAATAACTGCAGAACGTTAT 222
Query 3 GCAAATGCAAATGGAGTTGATAAGTTTAAATGCATTCATCAACAACTTTTGGAATATAAACAAAAGATATCTAA 76
||...|||...||||| ||||.|.||||||||||||||||||||||.|||.||.|||..||.||||
Sbjct 223 GCTGCTGCTTGTGGAG---------TTAATTACATTCATCAACAACTTTTGGAACATATACGAAAATTACCTAA 287
Query 77 AAATTCTCAAAATAGTAATCCAGAAGGAACATCTGAAGGAACACCTGACGAGGCTGCACCCTTGGCGGAAAGAA 150
||||.|||||||||..||||||||||||||||||..||||||||||||.|||||||||||||||||||||||||
Sbjct 288 AAATCCTCAAAATACCAATCCAGAAGGAACATCTACAGGAACACCTGATGAGGCTGCACCCTTGGCGGAAAGAA 361
Query 151 CACCTGACACGGCTGAAAGCTTGGTGGAAAGAACACCTGACGAATAGGATACAG-------------------- 204
|||||||||||||||||||||||.||||||.||||||||||| |||.|.||.
Sbjct 362 CACCTGACACGGCTGAAAGCTTGCTGGAAAAAACACCTGACG---AGGCTGCACGCTTGGTGGAGGGAACGTCT 432
Query 205 -------------------------------------------------------------------------- 204
Sbjct 433 GCCAAAATTCAATGTCTGGGGAAAGCAACATCTGGAAAGTTTGAACAGTCAACAGAAGAAACACCTAGGAAAAT 506
Query 205 -------------------------------------------------------------------------- 204
Sbjct 507 TTTGAGGCCTACAAAAGAAACATCTGAGAAATTTTCATGGCCAGCAAAAGAAAGATCTAGGAAGATCACATGGG 580
Query 205 -------------------------------------------------------------------------- 204
Sbjct 581 AGGAAAAAGAAACATCTGTAAAGACTGAATGCGTGGCAGGAGTAACACCTAATAAAACTGAAGTTTTGGAAAAA 654
Query 205 -------------------------------------------------------------------------- 204
Sbjct 655 GGAACATCTAATATGATTGCATGTCCTACAAAAGAAACATCTACAAAAGCAAGTACAAATGTGGATGTGAGTTC 728
Query 205 -------------------------------------------------------------------------- 204
Sbjct 729 TGTAGAGCCTATATTCAGCATAGATTGATGGAGACCTCTGCATCACTGAGATCAAGTCTTTTTGGCACACGGAC 802
Query 205 -------------------------------------------------------------------------- 204
Sbjct 803 TATTGAAAATTCACAGTGTACAAAAGTTGAGGAAGACTTTAATCTTGCTACCAAGATTATCTCTAAGAGTGCTG 876
Query 205 -------------------------------------------------------------------------- 204
Sbjct 877 CACAGAATTATACGTGTTTACCTGATGCTACATATCAAAAAGATATCAAAACAATAAATCACAAAATAGAAGAT 950
Query 205 -------------------------------------------------------------------------- 204
Sbjct 951 CAGATGTTCCCATCAGAATCCAAACGAGAGGAAGATGAAGAATATTCTTGGGATTCTGGGAGTCTCTTTGAGAG 1024
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1025 TTCTGCAAAGACTCAAGTGTGTATACCTGAGTCTATGTATCAGAAAGTAATGGAGATAAATAGAGAAGTAGAAG 1098
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1099 AGCTTCCTGAGAAGCCATCTGCCTTCAAGCCTGCCGTTGAAATGCAAAAGACTGTTCCAAATAAAGCCTTTGAA 1172
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1173 TTGAAGAATGAACAAACATTGAGAGCAGCTCAGATGTTCCCATCAGAATCCAAACAAAAGGACGATGAAGAAAA 1246
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1247 TTCTTGGGATTCTGAGAGTCCCTGTGAGACGGTTTCACAGAAGGATGTGTATTTACCCAAAGCTACACATCAAA 1320
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1321 AAGAATTCGATACCTTAAGTGGAAAATTAGAAGAGTCTCCTGTTAAAGATGGTCTTCTGAAGCCTACCTGTGGA 1394
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1395 AGGAAAGTTTCTCTTCCAAATAAAGCCTTAGAATTAAAGGACAGAGAAACATTCAAAGCAGAGTCTCCTGATAA 1468
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1469 AGATGGTCTTCTGAAGCCTACCTGTGGAAGGAAAGTTTCTCTTCCAAATAAAGCCTTAGAATTAAAGGACAGAG 1542
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1543 AAACACTCAAAGCAGAGTCTCCTGATAATGATGGTCTTCTGAAGCCTACCTGTGGAAGGAAAGTTTCTCTTCCA 1616
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1617 AATAAAGCTTTAGAATTGAAGGACAGAGAAACATTCAAAGCAGCTCAGATGTTCCCATCAGAATCCAAACAAAA 1690
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1691 GGATGATGAAGAAAATTCTTGGGATTTTGAGAGTTTCCTTGAGACTCTCTTACAGAATGATGTGTGTTTACCCA 1764
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1765 AGGCTACACATCAAAAAGAATTCGATACCTTAAGTGGAAAATTAGAAGAGTCTCCTGATAAAGATGGTCTTCTG 1838
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1839 AAGCCTACCTGTGGAAGGAAAGTTTCTCTTCCAAATAAAGCCTTAGAATTAAAGGACAGAGAAACACTCAAAGC 1912
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1913 AGAGTCTCCTGATAAAGATGGTCTTCTGAAGCCTACCTGTGTAAGGAAAGTTTCTCTTCCAAATAAAGCCTTAG 1986
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1987 AATTAAAGGACAGAGAAACATTAAAAGCAGCTCAGATGTTCCCATCAGAATCCAAACAAAAGGATGATGAAGAA 2060
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2061 AATTCTTGGGATTTTGAGAGTTTCCTTGAGGCTCTCTTACAGAATGATGGGTGTTTACCCAAGGCTACACATCA 2134
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2135 AAAAGAATTCGATACCTTAAGTGGAAAATTAGAAGAGTCTCCTGATAAAGATGGTCTTCTGAAGCCTACCTGTG 2208
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2209 GAATGAAAATTTCTCTTCCAAATAAAGCCTTAGAATTGAAGGACAGAGAAACATTCAAAGCAGAGGATGTGAGT 2282
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2283 TCTGTAGAGTCCACATTCAGTCTTTTTGGCAAACCGACTACTGAAAATTCACAGTCTACAAAAGTTGAGGAAGA 2356
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2357 CTTTAATCTTACTACCAAGGAGGGAGCAACAAAGACAGTAACTGGACAACAGGAACGTGATATTGGCATTATTG 2430
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2431 AACGAGCTCCACAAGATCAAACAAATAAGATGCCCACATCAGAATTAGGAAGAAAAGAAGATACAAAATCAACT 2504
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2505 TCAGATTCTGAGATTATCTCTGTGAGTGATACACAGAATTATGAGTGTTTACCTGAGGCTACATATCAAAAAGA 2578
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2579 AATAAAGACAACAAATGGCAAAATAGAAGAGTCTCCTGAAAAGCCTTCTCACTTTGAGCCTGCCACTGAAATGC 2652
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2653 AAAACTCTGTTCCAAATAAAGGCTTAGAATGGAAGAATAAACAAACATTGAGAGCAGATTCAACTACCCTATCA 2726
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2727 AAAATCTTGGATGCACTTCCTTCTTGTGAAAGAGGAAGGGAACTTAAAAAAGATAACTGTGAACAAATTACAGC 2800
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2801 AAAAATGGAACAAACGAAAAATAAGTTTTGTGTACTACAAAAGGAACTGTCAGAAGCGAAAGAAATAAAATCAC 2874
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2875 AGTTAGAGAACCAAAAAGCTAAATGGGAACAAGAGCTCTGCAGTGTGAGATTGACTTTAAATCAAGAAGAAGAG 2948
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2949 AAGAGAAGAAATGTCGATATATTAAAAGAAAAAATTAGACCCGAAGAGCAACTTAGGAAAAAGTTAGAAGTGAA 3022
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3023 ACAACAACTTGAACAGACTCTCAGAATACAAGATATAGAATTGAAAAGTGTAACAAGTAATTTGAATCAGGTTT 3096
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3097 CTCACACTCATGAAAGTGAAAATGATCTCTTTCATGAAAATTGCATGTTGAAAAAGGAAATTGCCATGCTAAAA 3170
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3171 CTGGAAGTAGCCACACTGAAACATCAACACCAGGTGAAGGAAAATAAATACTTTGAGGACATTAAGATTTTACA 3244
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3245 AGAAAAGAATGCTGAACTTCAAATGACCCTAAAACTGAAACAGAAAACAGTAACAAAAAGGGCATCTCAGTATA 3318
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3319 GAGAGCAGCTTAAAGTTCTGACGGCAGAGAACACGATGCTGACTTCTAAATTGAAGGAAAAACAAGACAAAGAA 3392
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3393 ATACTGGAGACAGAAATTGAATCACACCATCCTAGACTGGCTTCTGCTTTACAAGACCATGATCAAAGTGTCAC 3466
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3467 ATCAAGAAAAAACCAAGAACTTGCTTTCCACAGTGCAGGAGATGCTCCTTTGCAAGGAATAATGAATGTTGATG 3540
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3541 TGAGTAATACAATATATAACAATGAGGTGCTCCATCAACCACTTTATGAAGCTCAAAGGAAATCCAAAAGCCCA 3614
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3615 AAAATTAATCTCAATTATGCAGGAGATGATCTAAGAGAAAATGCATTGGTTTCAGAACATGCACAAAGAGACCG 3688
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3689 ATGTGAAACACAGTGTCAAATGAAGAAAGCTGAACACATGTATCAAAATGAACAAGATAATGTGGACAAACACA 3762
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3763 CTGAACAGCAGGAGTCTCTGGAGCAGAAATTATTTCAACTAGAAAGCAAAAATAGGTGGCTTCGACAGCAATTA 3836
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3837 GTTTATGCACATAAGAAAGTTAACAAAAGCAAGGTAACAATTAATATTCAGTTTCCTGAGATGAAAATGCAACG 3910
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3911 TCATCTAAACGAGAAAAATGAGGAGGTATTCAATTATGGTAACCATTTAAAAGAACGTATAGATCAATATGAAA 3984
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3985 AAGAGAAAGCAGAAAGAGAAGTCATTGTGAGACAACTTCAAAAAAAATTGGCGGATCTTAATAAACAGTGTGAG 4058
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4059 GCTTCACTAAAGGTTACATCACATTCTCACTCTCTGAGGCATCAATAGAGGCTACATCACATTATCACATTAAT 4132
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4133 CTCAAAGATTAAACAGTAAAGTTTATTGTGAACATTTGCTTCTTTTTCCATTTTAAAGTTAAACAAGAAGAAAA 4206
Query 205 --------------------------------------- 204
Sbjct 4207 GCTGTTGGGTACACCTGCAGAAAGGCTGTCACTTCACAC 4245
