Construct: ORF ccsbBroadEn_10303
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018529.1_s300c1, BRDN0000398525
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD30BP2 (149992)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NM_001358416.1 | 24.2% | 5.3% | (many diffs) |
| 2 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_164000.1 | 13.8% | (many diffs) | |
| 3 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_027020.3 | 13.4% | (many diffs) | |
| 4 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_024451168.1 | 13.4% | 3.6% | (many diffs) |
| 5 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_024451167.1 | 13% | 3.6% | (many diffs) |
| 6 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_163999.1 | 12.4% | (many diffs) | |
| 7 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_027019.2 | 11.6% | (many diffs) | |
| 8 | human | 644669 | LOC644669 | ankyrin repeat domain 30B p... | NR_027417.1 | 9.4% | (many diffs) | |
| 9 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_152415.2 | 8% | (many diffs) | |
| 10 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_011525666.2 | 6.5% | 1.1% | (many diffs) |
| 11 | human | 149992 | ANKRD30BP2 | ankyrin repeat domain 30B p... | NR_026916.1 | 5.9% | 1_622del;827_3438del | |
| 12 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_011525665.2 | 5.1% | 1.4% | (many diffs) |
| 13 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XM_011519758.2 | 4.9% | 1.1% | (many diffs) |
| 14 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_011525664.2 | 4.8% | 1.3% | (many diffs) |
| 15 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | NR_160272.1 | 4.6% | (many diffs) | |
| 16 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | NM_052997.2 | 4.4% | 1.2% | (many diffs) |
| 17 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935062.2 | 3.9% | (many diffs) | |
| 18 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XM_011519757.3 | 3.7% | 1% | (many diffs) |
| 19 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935061.2 | 3.6% | (many diffs) | |
| 20 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | NM_001367607.1 | 3.6% | 1% | (many diffs) |
| 21 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_001747257.1 | 3.6% | (many diffs) | |
| 22 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935060.2 | 3.6% | (many diffs) | |
| 23 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935059.2 | 3.5% | (many diffs) | |
| 24 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_001753189.1 | 3.5% | (many diffs) | |
| 25 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_001753190.1 | 3.5% | (many diffs) | |
| 26 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935058.2 | 3.5% | (many diffs) | |
| 27 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935057.2 | 3.4% | (many diffs) | |
| 28 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | XR_002959312.1 | 3.2% | (many diffs) | |
| 29 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_930524.3 | 2.1% | (many diffs) | |
| 30 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957044.1 | 2.1% | (many diffs) | |
| 31 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957048.1 | 1.8% | (many diffs) | |
| 32 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957046.1 | 1.8% | (many diffs) | |
| 33 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957047.1 | 1.8% | (many diffs) | |
| 34 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957043.1 | 1.7% | (many diffs) | |
| 35 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957041.1 | 1.7% | (many diffs) | |
| 36 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957040.1 | 1.7% | (many diffs) | |
| 37 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957042.1 | 1.7% | (many diffs) | |
| 38 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957045.1 | 1.7% | (many diffs) | |
| 39 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957039.1 | 1.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 273
- ORF length:
- 204
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAAATGCAA ATGGAGTTGA TAAGTTTAAA TGCATTCATC AACAACTTTT 121 GGAATATAAA CAAAAGATAT CTAAAAATTC TCAAAATAGT AATCCAGAAG GAACATCTGA 181 AGGAACACCT GACGAGGCTG CACCCTTGGC GGAAAGAACA CCTGACACGG CTGAAAGCTT 241 GGTGGAAAGA ACACCTGACG AATAGGATAC AGTTGCCAAC TTTCTTGTAC AAAGTtggca 301 ttataagaaa gcattgctta tcaatttgtt gcaacgaac