Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10640
Subject:
NR_122104.1
Aligned Length:
2645
Identities:
524
Gaps:
2120

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTCTCTGCCCTTGCAGAGCTCACTGGAGGAATAAACCTTTGTAGAGGAAGGTTTGATGGGCTTTCCTGGAAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGTACTCATAGGAAAACCCAAAAGCTCAACAGATGCTGTCTCCTTGGTTAACATTAGGAGCTATGATCTCCATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTCCCATGGCATTAGAGGTTTAGATACTGAGGATCAGAGAGGCAAGTTCAGCATCAGAAGGCAGGAAGAGGCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAATCTGGACACCGATTCCTAACTCTAAAGCTGCGTCATCTCTAGTGCATCTCATCAGCTCTTCCCAATGGCAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAATCAACTTTAGCATACTGGCCAGCCGGAATAGATGTCCTTGGGCATTCTTAAGATCTGAGACTGTGATGGTT  370

Query    1  ---------------------------------ATGCCTCAGTGGCTGGNGGCGTCCATCATTCCTGGGTGTGT  41
                                             ||||||||||||||||.||||||||||||||||||||||||
Sbjct  371  AATTTTAGGGTATCAGCTTGACTGGGTTGAGGAATGCCTCAGTGGCTGGTGGCGTCCATCATTCCTGGGTGTGT  444

Query   42  CTGTGAGAGTGTTTCCAGAGGAGACTCACATGTGAGCCAGCGGGCTGAGAAGGAGACCCGTTCTCAGTGTGAGT  115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGTGAGAGTGTTTCCAGAGGAGACTCACATGTGAGCCAGCGGGCTGAGAAGGAGACCCGTTCTCAGTGTGAGT  518

Query  116  GTGCACTGTCCAATCAGCTCAAGGCCAGGCTGGGGACAAACAGGCAGAAGAAGGAGGATTCTCTCTCCCACCTT  189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GTGCACTGTCCAATCAGCTCAAGGCCAGGCTGGGGACAAACAGGCAGAAGAAGGAGGATTCTCTCTCCCACCTT  592

Query  190  TCTGGAGCAGGATGCCTTTTCTCCTTGGACATCAGACTACAGGGTCTTTGGCTTTTGGATTCTAGGACTTGTAC  263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCTGGAGCAGGATGCCTTTTCTCCTTGGACATCAGACTACAGGGTCTTTGGCTTTTGGATTCTAGGACTTGTAC  666

Query  264  CAATGGCCTCCCGGGGCCCTCAGGCCTTCAGCCTCCAACGAAGGTCTGTGCTGTTGGCCTCCCTGATTCTGAGG  337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CAATGGCCTCCCGGGGCCCTCAGGCCTTCAGCCTCCAACGAAGGTCTGTGCTGTTGGCCTCCCTGATTCTGAGG  740

Query  338  CTTCTGGACTTGGACTGAGGCATGCTACGGGCTTCTCTGATTCTCCAGCTTGTGGATGGCCTATCATGGGACTT  411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTTCTGGACTTGGACTGAGGCATGCTACGGGCTTCTCTGATTCTCCAGCTTGTGGATGGCCTATCATGGGACTT  814

Query  412  CTCCACCTCTGTAATCACAAGGGCCAATGCCCCCTAATACCTTTCTTTTCATATATCCTACTGGTTCTGTCTGC  485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTCCACCTCTGTAATCACAAGGGCCAATGCCCCCTAATACCTTTCTTTTCATATATCCTACTGGTTCTGTCTGC  888

Query  486  CTGGGGAACCTTGACTAATACAGATATGGAGCATTTGAAA----------------------------------  525
            ||||||||||||||||||||||||||||||||||||||||                                  
Sbjct  889  CTGGGGAACCTTGACTAATACAGATATGGAGCATTTGAAATGAGAGGATTTCTGATCCTGTTCTTCAAGAAGCA  962

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct  963  GTAGGTCAGAGCATACCTCTTTAAAATAACTTCTGGATAGTTTCACAGTTAGAAAGAATCAGCTTCAGGTGATC  1036

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1037  TTGAAGATCCCACTTGGATTCCACTCTCCAGCTCTCAGGAAGCTCTGGCTTCCTTACTTCTTCTGGGATTTTCC  1110

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1111  TTTCATGCTGGGGAGAGATGCTCCCTCACCACTACCCAGCCCATGGGACACACCGAGTCTGGTGGAGGATGCTG  1184

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1185  TGACCTGTGGTGCTTGTGATTGCGTCTTACTGTGTCGCCCAGACTGAAGTGCAGTGGTACAGTCTCAGCTCACT  1258

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1259  GCAACCTCGGCTTCCCAGGCTCAAGCAATCCTCCTGCCTCAGTATCCCAAGTAGCTGGGAAAACAGGTAAAAGG  1332

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1333  GAAGCAAAGGAAGAAAGAAGAAAAGAAGACAACCCATGTAGGATGTTAACCAGGTCACTGGTTTTATTGTCACA  1406

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1407  TGCTTTTAAAAGAACATGCATGAGTGAGCTGTCTCACTTTCCAATCCAAGAATGTTTGATTCCACTGTGATGAA  1480

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1481  AAATTCTGTGACCTGGCAGGAAAACACTACAAGAAGGGCAGAAGCGGAAAATTCTTTCTATTTTCCAATATGGC  1554

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1555  TTTCTTTGATTCAAGAAAGGCCTCCTCTCCTCCACATCTCTGTCCTGCTCATGACCCCAGAAGATCTCAGGTTG  1628

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1629  ACTGCATTTGTTCTATGCCTTCCTCAAGCTTCACCTCTTCTGTGAGCCTCCTGGGTGGGCTCCTTCTGGCTAAA  1702

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1703  TCTTCCTCCTCACTGTTGCCTTTTTATCTTATGCAAGCACCTGCCTTATCTAAAGGTACATACCTTTTCATAGA  1776

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1777  ACACTTGCCTGTTTACCTAGCTATTTCCCCATGACTATGGGCTTTTTGAGAGGTGCTGTGTTATTTATTTATTT  1850

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1851  ATTTATTTATCATTTTGTTTTGAGACGGAATCTTGCTCTTGTTGCTCAGGTTGGAGTGCAATGGCGCGATCTTG  1924

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1925  GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGG  1998

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 1999  CACCCACCACCATGCCCAGCTACTTTTTTTGTATTTTTAGTAGAGAAAGGGTTTCACTATGTTGGCCAGGCTGG  2072

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 2073  TCTCGAACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGTTGGGATCACAGGCGTGAGCCACC  2146

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 2147  TTGCCTGGCCACTGTGTTATTTTTTTTTACTTCTATACCTTCAGCACCCCAAACAGTGCCCAATACAAAGTTCC  2220

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 2221  ACACTAAATATTTATTGATGGAATAATGAATAGGGTTGGGGGCACTGGCAGGGAGGGTGCCCACTGGGCTGAAA  2294

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 2295  TTCTGGGGCCTGAATGCATCACTCCCTTCGCCTCTGGATGAGAAAAAAGAGGGACAGTACCCATGAGGCCCCTA  2368

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 2369  GGGAAGCCTTCTGCAGACCAAAAGACCTCTTTGAACAGAGGGCAGAGGAAACAGGTCTAGAGAAAGTGAATGTG  2442

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 2443  AAGATTCAGGCTTTAGAATGAGCCTTGCAGACCTGCTGGCAGTGACAAGAATTACCTGTGTACAGCACCTTGTG  2516

Query  526  --------------------------------------------------------------------------  525
                                                                                      
Sbjct 2517  GTTCCCATGACCCCATTTAGATCTCATCATGACCCTGTTGGGTGGATGTTATTTTCTGCTTTACAGGGGAGAGA  2590

Query  526  -------------------------------------------------------  525
                                                                   
Sbjct 2591  GGCCAAACTCGTGATCTGATCTGTCTGATATCACTTACTTAAACAGTTAAGTGGT  2645

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.