Construct: ORF ccsbBroadEn_10640
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008802.1_s300c1, BRDN0000398513
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC02072 (440446)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440446 | LINC02072 | long intergenic non-protein... | NR_122104.1 | 19.8% | 1_403del;420T>N;929_2645del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 70
- ORF end:
- 595
- ORF length:
- 525
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAA 61 GTTGGCACCA TGCCTCAGTG GCTGGNGGCG TCCATCATTC CTGGGTGTGT CTGTGAGAGT 121 GTTTCCAGAG GAGACTCACA TGTGAGCCAG CGGGCTGAGA AGGAGACCCG TTCTCAGTGT 181 GAGTGTGCAC TGTCCAATCA GCTCAAGGCC AGGCTGGGGA CAAACAGGCA GAAGAAGGAG 241 GATTCTCTCT CCCACCTTTC TGGAGCAGGA TGCCTTTTCT CCTTGGACAT CAGACTACAG 301 GGTCTTTGGC TTTTGGATTC TAGGACTTGT ACCAATGGCC TCCCGGGGCC CTCAGGCCTT 361 CAGCCTCCAA CGAAGGTCTG TGCTGTTGGC CTCCCTGATT CTGAGGCTTC TGGACTTGGA 421 CTGAGGCATG CTACGGGCTT CTCTGATTCT CCAGCTTGTG GATGGCCTAT CATGGGACTT 481 CTCCACCTCT GTAATCACAA GGGCCAATGC CCCCTAATAC CTTTCTTTTC ATATATCCTA 541 CTGGTTCTGT CTGCCTGGGG AACCTTGACT AATACAGATA TGGAGCATTT GAAATTGCCA 601 ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa 661 c