Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10740
Subject:
NM_001287759.1
Aligned Length:
5012
Identities:
187
Gaps:
4807

Alignment

Query    1  ATGCTTATAAAC---AAGTTGTGGCTGCTCCTGGTTACGTTGTGCCTGACCGAGGAACTGGCAGCAGCGGGAGA  71
            ||||      ||   ..|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGC------ACCCTGGGTTGTGGCTGCTCCTGGTTACGTTGTGCCTGACCGAGGAACTGGCAGCAGCGGGAGA  68

Query   72  GAAGTCTTATGGAAAGCCATGTGGGGGCCAGGACTGCAGTGGGAGCTGTCAGTGTTTTCCTGAGAAAGGAGCGA  145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   69  GAAGTCTTATGGAAAGCCATGTGGGGGCCAGGACTGCAGTGGGAGCTGTCAGTGTTTTCCTGAGAAAGGAGCGA  142

Query  146  GA-CACAACTTG------------------------CAGCTACTGAATGATATGGCTGGCCGGCTCTACCATTT  194
            || .||.||.||                        |||.|.||.||.|||     |..|.||||||||...||
Sbjct  143  GAGGACGACCTGGACCAATTGGAATTCAAGGCCCAACAGGTCCTCAAGGAT-----TCACTGGCTCTACTGGTT  211

Query  195  CA--GTGA---------------GGTTCT-----GCCTAATCT----CTTT-----------------------  219
            .|  |.||               |||| |     ||||  |||    |.||                       
Sbjct  212  TATCGGGATTGAAAGGAGAAAGGGGTT-TCCCAGGCCT--TCTGGGACCTTATGGACCAAAAGGAGATAAGGGT  282

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  283  CCCATGGGAGTTCCTGGCTTTCTTGGCATCAATGGGATTCCGGGCCACCCTGGACAACCAGGCCCCAGAGGCCC  356

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  357  ACCTGGTCTGGATGGCTGTAATGGAACTCAAGGAGCTGTTGGATTTCCAGGCCCTGATGGCTATCCTGGGCTTC  430

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  431  TCGGACCACCCGGGCTTCCTGGTCAGAAAGGATCAAAAGGTGACCCTGTCCTTGCTCCAGGTAGTTTCAAAGGA  504

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  505  ATGAAGGGGGATCCTGGGCTGCCTGGACTGGATGGAATCACTGGCCCACAAGGAGCACCCGGATTTCCTGGAGC  578

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  579  TGTAGGACCTGCAGGACCACCAGGATTACAAGGTCCTCCAGGGCCTCCTGGTCCTCTTGGTCCTGATGGGAATA  652

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  653  TGGGGCTAGGTTTTCAAGGAGAGAAAGGAGTCAAGGGGGATGTTGGCCTCCCTGGCCCAGCAGGACCTCCACCA  726

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  727  TCTACTGGAGAGCTGGAATTCATGGGATTCCCCAAAGGGAAGAAAGGATCCAAGGGTGAACCAGGGCCTAAGGG  800

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  801  TTTTCCAGGCATAAGTGGCCCTCCAGGCTTCCCGGGCCTTGGAACTACTGGAGAAAAGGGAGAAAAGGGAGAAA  874

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  875  AGGGAATCCCTGGTTTGCCAGGACCTAGGGGTCCCATGGGTTCAGAAGGAGTCCAAGGCCCTCCAGGGCAACAG  948

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct  949  GGCAAGAAAGGGACCCTGGGATTTCCTGGGCTTAATGGATTCCAAGGAATTGAGGGTCAAAAGGGTGACATTGG  1022

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1023  CCTGCCAGGCCCAGATGTTTTCATCGATATAGATGGTGCTGTGATCTCAGGTAATCCTGGAGATCCTGGTGTAC  1096

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1097  CTGGCCTCCCAGGCCTTAAAGGAGATGAAGGCATCCAAGGCCTACGTGGCCCTTCTGGTGTCCCTGGATTGCCA  1170

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1171  GCATTATCAGGTGTCCCAGGAGCCCTAGGGCCTCAGGGATTTCCAGGGCTGAAGGGGGACCAAGGAAACCCAGG  1244

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1245  CCGTACCACAATTGGAGCAGCTGGCCTCCCTGGCAGAGATGGTTTGCCAGGCCCACCAGGTCCACCAGGCCCAC  1318

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1319  CTAGTCCAGAATTTGAGACTGAAACTCTACACAACAAAGAGTCAGGGTTCCCTGGTCTCCGAGGAGAACAAGGT  1392

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1393  CCAAAAGGAAACCTAGGCCTCAAAGGAATAAAAGGAGACTCAGGTTTCTGTGCTTGTGACGGTGGTGTTCCCAA  1466

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1467  CACTGGACCACCCGGGGAACCAGGCCCACCTGGTCCATGGGGTCTCATAGGCCTTCCAGGCCTTAAAGGAGCCA  1540

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1541  GAGGAGATCGAGGCTCTGGGGGTGCACAGGGCCCAGCAGGGGCTCCAGGCTTAGTTGGGCCTCTGGGTCCTTCA  1614

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1615  GGACCCAAAGGAAAGAAGGGGGAACCAATTCTCAGTACAATCCAAGGAATGCCAGGAGATCGGGGTGATTCTGG  1688

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1689  CTCCCAGGGCTTCCGTGGTGTAATAGGAGAACCAGGCAAGGACGGAGTACCAGGTTTACCAGGTCTGCCAGGCC  1762

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1763  TTCCGGGTGATGGTGGACAGGGCTTCCCAGGTGAAAAGGGGTTACCTGGACTTCCTGGTGAAAAAGGCCATCCT  1836

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1837  GGTCCACCTGGCCTCCCAGGAAATGGGTTACCAGGACTTCCTGGACCCCGTGGGCTTCCTGGAGATAAAGGCAA  1910

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1911  GGATGGATTACCGGGACAACAAGGCCTTCCCGGATCTAAGGGAATCACCCTGCCCTGTATTATTCCTGGGTCAT  1984

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 1985  ACGGTCCATCAGGATTTCCAGGCACTCCCGGATTCCCAGGCCCTAAAGGGTCTCGAGGCCTCCCTGGGACCCCA  2058

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2059  GGCCAGCCTGGGTCAAGTGGAAGTAAAGGAGAGCCAGGGAGTCCAGGATTGGTTCATCTTCCTGAATTACCAGG  2132

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2133  ATTTCCTGGACCTCGTGGGGAGAAGGGCTTGCCTGGGTTTCCTGGGCTCCCTGGAAAAGATGGCTTGCCTGGGA  2206

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2207  TGATTGGCAGTCCAGGCTTACCTGGTTCCAAGGGAGCCACTGGTGACATCTTTGGTGCTGAAAATGGTGCTCCG  2280

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2281  GGGGAACAAGGCCTACAAGGATTAACAGGGCACAAAGGATTTCTTGGAGACTCTGGCCTTCCAGGACTCAAGGG  2354

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2355  TGTGCACGGGAAGCCTGGCTTACTAGGCCCCAAAGGTGAGCGGGGCAGCCCTGGGACACCAGGACAGGTGGGAC  2428

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2429  AGCCAGGCACCCCAGGATCTAGTGGTCCATATGGCATCAAGGGCAAATCTGGGCTCCCAGGAGCACCAGGCTTC  2502

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2503  CCAGGCATCTCAGGACATCCTGGAAAGAAAGGAACAAGAGGCAAGAAAGGTCCTCCTGGATCAATTGTAAAGAA  2576

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2577  AGGGCTGCCAGGGCTAAAAGGCCTTCCTGGAAATCCAGGCCTAGTAGGACTGAAAGGAAGCCCAGGCTCTCCAG  2650

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2651  GGGTCGCTGGGTTGCCAGCCCTCTCTGGACCCAAGGGAGAGAAGGGGTCTGTTGGATTCGTAGGTTTTCCAGGA  2724

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2725  ATACCAGGTCTGCCTGGTATTCCTGGAACAAGAGGATTAAAAGGAATTCCAGGATCAACTGGAAAAATGGGACC  2798

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2799  ATCTGGACGTGCTGGTACTCCTGGTGAAAAGGGAGACAGAGGCAATCCGGGGCCAGTCGGAATACCTAGTCCAA  2872

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2873  GACGTCCAATGTCAAACCTTTGGCTCAAAGGAGACAAAGGCTCTCAAGGCTCAGCCGGATCCAATGGATTTCCT  2946

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2947  GGGCCAAGAGGTGACAAAGGAGAGGCTGGTCGACCTGGACCACCAGGCCTACCTGGAGCTCCTGGCCTCCCAGG  3020

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3021  CATTATCAAAGGAGTTAGTGGAAAGCCAGGGCCCCCTGGCTTCATGGGAATCCGGGGCTTACCTGGCCTGAAGG  3094

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3095  GGTCCTCTGGGATCACAGGTTTCCCAGGAATGCCAGGAGAAAGTGGTTCACAAGGTATCAGAGGGTCGCCTGGA  3168

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3169  CTCCCAGGAGCATCTGGTCTCCCAGGCCTGAAAGGAGACAACGGCCAGACAGTTGAAATTTCCGGTAGCCCAGG  3242

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3243  ACCCAAGGGACAGCCTGGCGAATCTGGTTTTAAAGGCACAAAAGGAAGAGATGGACTAATAGGCAATATAGGCT  3316

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3317  TCCCTGGAAACAAAGGTGAAGATGGAAAAGTTGGTGTTTCTGGAGATGTTGGCCTTCCTGGAGCTCCAGGATTT  3390

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3391  CCAGGAGTTGCCGGCATGAGAGGAGAACCAGGACTTCCAGGTTCTTCTGGTCACCAAGGGGCAATTGGGCCTCT  3464

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3465  AGGATCCCCCGGATTAATAGGACCCAAAGGACCTAGTATCACCGGTGTGCCTGGGCCTGCTGGTCTCCCTGGAC  3538

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3539  CCAAAGGAGAAAAAGGATATCCAGGAATTGGCATCGGAGCTCCAGGGAAGCCGGGCCTGAGAGGGCAAAAAGGT  3612

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3613  GATCGAGGTTTCCCAGGTCTCCAGGGCCCTGCTGGTCTCCCCGGTGCCCCAGGCATCTCCTTGCCCTCACTCAT  3686

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3687  AGCAGGACAGCCTGGTGACCCCGGGCGACCAGGCCTAGATGGAGAACGAGGCCGCCCAGGCCCCGCTGGACCCC  3760

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3761  CAGGTCCCCCTGGGCCATCCTCGAATCAAGGCGACACCGGAGACCCTGGCTTCCCTGGAATTCCTGGACCTAAA  3834

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3835  GGGCCTAAGGGAGACCAAGGAATTCCAGGTTTTTCTGGCCTCCCTGGAGAGCTAGGACTGAAAGGCATGAGAGG  3908

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3909  TGAGCCTGGCTTCATGGGGACTCCAGGCAAGGTTGGGCCACCTGGAGACCCAGGATTTCCCGGAATGAAGGGGA  3982

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 3983  AGGCAGGGCCAAGAGGCTCTTCTGGCCTCCAAGGTGATCCTGGACAAACACCAACTGCAGAAGCTGTCCAGGTT  4056

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4057  CCTCCTGGACCCTTGGGTCTACCAGGGATCGATGGCATCCCTGGCCTCACTGGGGACCCTGGGGCTCAAGGCCC  4130

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4131  TGTAGGCCTACAAGGCTCCAAAGGTTTACCTGGCATCCCCGGTAAAGATGGCCCCAGTGGGCTCCCAGGCCCAC  4204

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4205  CTGGGGCTCTTGGTGATCCTGGTCTGCCTGGACTGCAAGGCCCTCCAGGATTTGAAGGAGCTCCAGGGCAGCAA  4278

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4279  GGCCCCTTCGGGATGCCTGGAATGCCTGGCCAGAGCATGAGAGTGGGCTACACGTTGGTAAAGCACAGCCAGTC  4352

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4353  GGAACAGGTGCCCCCGTGTCCCATCGGGATGAGCCAGCTGTGGGTGGGGTACAGCTTACTGTTTGTGGAGGGGC  4426

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4427  AAGAGAAAGCCCACAACCAGGACCTGGGCTTTGCTGGCTCCTGTCTGCCCCGCTTCAGCACCATGCCCTTCATC  4500

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4501  TACTGCAACATCAACGAGGTGTGCCACTATGCCAGGCGCAATGATAAATCTTACTGGCTCTCCACTACCGCCCC  4574

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4575  TATCCCCATGATGCCCGTCAGCCAGACCCAGATTCCCCAGTACATCAGCCGCTGCTCTGTGTGTGAGGCACCCT  4648

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4649  CGCAAGCCATTGCTGTGCACAGCCAGGACATCACCATCCCGCAGTGCCCCCTGGGCTGGCGCAGCCTCTGGATT  4722

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4723  GGGTACTCTTTCCTCATGCACACTGCCGCTGGTGCCGAGGGTGGAGGCCAGTCCCTGGTCTCACCTGGCTCCTG  4796

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4797  CCTAGAGGACTTTCGGGCCACTCCTTTCATCGAATGCAGTGGTGCCCGAGGCACCTGCCACTACTTTGCAAACA  4870

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 4871  AGTACAGTTTCTGGTTGACCACAGTGGAGGAGAGGCAGCAGTTTGGGGAGTTGCCTGTGTCTGAAACGCTGAAA  4944

Query  220  ------------------------------------------------------  219
                                                                  
Sbjct 4945  GCTGGGCAGCTCCACACTCGAGTCAGTCGCTGCCAGGTGTGTATGAAAAGCCTG  4998

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