Construct: ORF ccsbBroadEn_10740
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017168.1_s300c1, BRDN0000388578
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COL4A6 (1288)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | XR_001755650.1 | 6.3% | (many diffs) | |
| 2 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | XM_011530854.2 | 5.1% | 4% | (many diffs) |
| 3 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | XM_011530852.2 | 3.8% | 3% | (many diffs) |
| 4 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | NM_001847.4 | 3.8% | 3% | (many diffs) |
| 5 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | NM_001287760.1 | 3.8% | 2.8% | (many diffs) |
| 6 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | XM_006724617.3 | 3.7% | 3% | (many diffs) |
| 7 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | NM_001287759.1 | 3.7% | 2.7% | (many diffs) |
| 8 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | NM_033641.4 | 3.6% | 2.7% | (many diffs) |
| 9 | human | 1288 | COL4A6 | collagen type IV alpha 6 chain | NM_001287758.1 | 3.6% | 2.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 285
- ORF length:
- 219
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT TATAAACAAG TTGTGGCTGC TCCTGGTTAC GTTGTGCCTG ACCGAGGAAC 121 TGGCAGCAGC GGGAGAGAAG TCTTATGGAA AGCCATGTGG GGGCCAGGAC TGCAGTGGGA 181 GCTGTCAGTG TTTTCCTGAG AAAGGAGCGA GACACAACTT GCAGCTACTG AATGATATGG 241 CTGGCCGGCT CTACCATTTC AGTGAGGTTC TGCCTAATCT CTTTTGCCCA ACTTTCTTGT 301 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c