Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10887
- Subject:
- XR_001744663.1
- Aligned Length:
- 2670
- Identities:
- 746
- Gaps:
- 1923
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAAAAGCGGCGGCAGCGGCTCTAGCGGCAGTAGCAGCAGCGCCGGGTCCCGTGCGGAGGTGCTCCTCGCAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGTTTCTCGAGCAGCGGCAGTTCTCACTACAGCGCCAGGACGAGTCCGGTTCGTGTTCGTCCGCGGAGATCTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGAAAACTTTAGAAACTGTT 222
Query 1 ---ATGG---------AGAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCAC 62
.||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCAC 296
Query 63 AGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAA 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAA 370
Query 137 GCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGA 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGA 444
Query 211 CCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGC 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGC 518
Query 285 TCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACT 592
Query 359 TTGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGC 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGC 666
Query 433 TTTGTTACTTTTGATGACCATGATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAA 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTTGTTACTTTTGATGACCATGATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAA 740
Query 507 TGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGC------------------------------------ 544
||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGCAGGAAGTTCAGAGTTCTAGGAGTGGAAGAGGAGGCA 814
Query 545 -------------------------------------------------------------------------- 544
Sbjct 815 ACTTTGGCTTTGGGGATTCACGTGGTGGCGGTGGAAATTTCGGACCAGGACCAGGAAGTAACTTTAGAGGAGGA 888
Query 545 -----------------------------------------------------AGGAGGACCTGGAGGTGGCAA 565
|||||||||||||||||||||
Sbjct 889 TCTGATGGATATGGCAGTGGACGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAA 962
Query 566 TTTTGGAGGTAGCCCCGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTTTGGAGGTAGCCCCGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGG 1036
Query 640 GTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGA 1110
Query 714 AATTATAACCAGCAACCTTCTAACTACGGTCCAA---------------------------------------- 747
||||||||||||||||||||||||||||||||||
Sbjct 1111 AATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGG 1184
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1185 ACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAGGAGCCGATACT 1258
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1259 GAGCTTCTTCCTATTTGCCATGGGCTTCACTGTATAAATAGGAGAGGATGAGAGCCCAGAGGTAACAGAACAGC 1332
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1333 TTCAGGTTATCGAAATAACAATGTTAAGGAAACTCTTATCTCAGTCATGCATAAATATGCAGTGATATGGCAGA 1406
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1407 AGACACCAGAGCAGATGCAGAGAGCCATTTTGTGAATGGATTGGATTATTTAATAACATTACCTTACTGTGGAG 1480
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1481 GAAGGATTGTAAAAAAAAATGCCTTTGAGACAGTTTCTTAGCTTTTTAATTGTTGTTTCTTTCTAGTGGTCTTT 1554
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1555 GTAAGAGTGTAGAAGCATTCCTTCTTTGATAATGTTAAATTTGTAAGTTTCAGGTGACATGTGAAACCTTTTTT 1628
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1629 AAGATTTTTCTCAAAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAACGTTTTTCCTTTAA 1702
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1703 AAAAATTTAAGTGCGTGTGTAGAGTTAAGAAGCTGTTGTACATTTATGATTTAATAAAATAATTCTAAAGGAAA 1776
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1777 TTGTGTAATTATAGACTTTTTATTTTAAATAAGTTAAGGAGTGGGTAGTATAATTAAGGTCCGTTGCAAAGCTG 1850
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1851 TTGTTATATTTGTATAAGATAAATGCTGGTCAGATGTAAGTGTGTTGTCTGCAATTCATCAGGATTAAATTATG 1924
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1925 TAGATAACTTAAGGGATATCTCTGCAAGGAGAAACACCTTTTTAGATCTTTTAGATGCTGCTTCTTCAATGCAA 1998
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1999 GGAAAGGAAATAACCCCAGCGAGGTACTCTTCAGGGACACAGGTCTAGTACAAGAGAACTCTTGACGGCTACTA 2072
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2073 AGTTCAGCCAGTCTTAAAAAACTGTGCTGTTTCTACAAAACTTTAACTACAGTAGTTTATAAGGATGCCAACGA 2146
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2147 AAGCTGAGGGTGTAGAGCAAAATAGTTCTAAGCTTCAGTTAAACTTCTTTAGCATTGATATGAACCATGGACAA 2220
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2221 GTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAGGCAAGCCAAGTGATCATTAATAA 2294
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2295 AGCTTTTCTTGGTTCCTTCAGTGGTGTTGGTAGTAAAATGGAAGGTGTCTTGCTGCAGGTAACTAATGAAGAAG 2368
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2369 TGGTCAACCACAGAGTCTTCAAGAAATAAGAAATTCTGTACCATCTGAAAGTAGTTCTTGTTGGTGCCTTCATT 2442
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2443 TAAAAAGCACTCTTTAAAATAAAAGGGAAATGTTTTCTGATAAAACAAACATTTAGTTGAGGTTCTTGATATAA 2516
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2517 AACAATTACAAAATGAGTGTTGTTTGTAAAACAGTAACATCAAATTGGCTAGAGAGATAAATGTATCATGTTTT 2590
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2591 AAATTAGGTTTTGTGAGTAGACAGATTACAATTCTATTTTAAATATAAAGTTTATAAAATAAATACTTTTTGTA 2664
Query 748 ------ 747
Sbjct 2665 TCCAAA 2670
