Construct: ORF ccsbBroadEn_10887

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004042.1_s300c1, BRDN0000395788
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPA2B1 (3181)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... NM_002137.4 73% 45.6% 545_707del;911_1023del
2 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XM_017012109.2 73% 45.6% 545_707del;911_1023del
3 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XM_017012110.2 73% 45.6% 545_707del;911_1023del
4 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... NM_031243.3 70.4% 43.8% (many diffs)
5 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XM_005249729.1 70.4% 43.8% (many diffs)
6 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744673.2 40.2% 1_197del;742_904del;1108_1858del
7 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_242077.2 39.3% (many diffs)
8 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744671.2 39% 1_197del;742_904del;1108_1914del
9 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_242076.1 38.2% (many diffs)
10 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_002956424.1 38% (many diffs)
11 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744674.2 35.7% 1_197del;742_904del;1108_2087del
12 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744672.2 34.8% 1_197del;742_904del;1108_2143del
13 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_428077.1 34.2% (many diffs)
14 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744666.2 30.8% (many diffs)
15 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744670.2 30.6% 1_197del;742_904del;1108_2436del
16 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744665.1 30.1% (many diffs)
17 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744668.2 28.3% 1_197del;742_904del;1108_2633del
18 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744663.1 27.9% (many diffs)
19 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744669.2 27.8% 1_197del;742_904del;1108_2680del
20 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744664.1 25.7% (many diffs)
21 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744667.2 25.5% 1_197del;742_904del;1108_2926del
22 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744662.1 25.1% (many diffs)
23 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_002956425.1 23.3% (many diffs)
24 human 3181 HNRNPA2B1 heterogeneous nuclear ribon... XR_001744675.1 23% (many diffs)
25 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... NM_182650.4 70.5% 50.6% (many diffs)
26 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... NM_016806.3 69% 45.6% (many diffs)
27 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XM_006506373.3 66.5% 43.8% (many diffs)
28 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XM_006506374.3 66.5% 43.8% (many diffs)
29 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XR_377483.3 30.6% (many diffs)
30 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XR_377482.3 29.8% (many diffs)
31 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... NR_104468.1 28.5% (many diffs)
32 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XR_868868.2 23.9% (many diffs)
33 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XR_868866.2 22.8% (many diffs)
34 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XR_868870.2 22.2% (many diffs)
35 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XR_868865.2 21.3% (many diffs)
36 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XR_868864.2 20.9% (many diffs)
37 mouse 53379 Hnrnpa2b1 heterogeneous nuclear ribon... XR_868869.2 20% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
813
ORF length:
747
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GAGAGAAAAG GAACAGTTCC GTAAGCTCTT TATTGGTGGC TTAAGCTTTG
121AAACCACAGA AGAAAGTTTG AGGAACTACT ACGAACAATG GGGAAAGCTT ACAGACTGTG
181TGGTAATGAG GGATCCTGCA AGCAAAAGAT CAAGAGGATT TGGTTTTGTA ACTTTTTCAT
241CCATGGCTGA GGTTGATGCT GCCATGGCTG CAAGACCTCA TTCAATTGAT GGGAGAGTAG
301TTGAGCCAAA ACGTGCTGTA GCAAGAGAGG AATCTGGAAA ACCAGGGGCT CATGTAACTG
361TGAAGAAGCT GTTTGTTGGC GGAATTAAAG AAGATACTGA GGAACATCAC CTTAGAGATT
421ACTTTGAGGA ATATGGAAAA ATTGATACCA TTGAGATAAT TACTGATAGG CAGTCTGGAA
481AGAAAAGAGG CTTTGGCTTT GTTACTTTTG ATGACCATGA TCCTGTGGAT AAAATCGTAT
541TGCAGAAATA CCATACCATC AATGGTCATA ATGCAGAAGT AAGAAAGGCT TTGTCTAGAC
601AAGAAATGCA GGAGGACCTG GAGGTGGCAA TTTTGGAGGT AGCCCCGGTT ATGGAGGAGG
661AAGAGGAGGA TATGGTGGTG GAGGACCTGG ATATGGCAAC CAGGGTGGGG GCTACGGAGG
721TGGTTATGAC AACTATGGAG GAGGAAATTA TGGAAGTGGA AATTACAATG ATTTTGGAAA
781TTATAACCAG CAACCTTCTA ACTACGGTCC AATGCCCAAC TTTCTTGTAC AAAGTtggca
841ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)