Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10887
- Subject:
- XR_001744675.1
- Aligned Length:
- 3061
- Identities:
- 705
- Gaps:
- 2334
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAAAAGCGGCGGCAGCGGCTCTAGCGGCAGTAGCAGCAGCGCCGGGTCCCGTGCGGAGGTGCTCCTCGCAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGTTTCTCGAGCAGCGGCAGTTCTCACTACAGCGCCAGGACGAGTCCGGTTCGTGTTCGTCCGCGGAGATCTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGAAAACTTTAGAAACTGTT 222
Query 1 ---ATGG---------AGAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCAC 62
.||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCAC 296
Query 63 AGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAA 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAA 370
Query 137 GCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGA 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGA 444
Query 211 CCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGC 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGC 518
Query 285 TCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACT 592
Query 359 TTGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGC 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGC 666
Query 433 TTTGTTACTTTTGATGACCATGATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAA 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTTGTTACTTTTGATGACCATGATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAA 740
Query 507 TGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGCAGG--------------AGGACCTG---GAGGTGGC 563
||||||||||||||||||||||||||||||||||||||||| |||| .|| ||||.|||
Sbjct 741 TGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGCAGGAAGTTCAGAGTTCTAGGA-GTGGAAGAGGAGGC 813
Query 564 AATTTTGG------------AGGTAGCCCCGG------TTATGGAGGAGGA---------------AGAGGAGG 604
||.||||| |.||.|...||| ||..|||..|||| ||||||||
Sbjct 814 AACTTTGGCTTTGGGGATTCACGTGGTGGCGGTGGAAATTTCGGACCAGGACCAGGAAGTAACTTTAGAGGAGG 887
Query 605 AT---ATGG---TGGTGGAGGACCTGGATATGGCAACCAGGGTGG-------GGGCTACGGAGGTGGTTATGAC 665
|| |||| |||..|.||||.|||||.||| ||.||| ||| ||.|||||.||
Sbjct 888 ATCTGATGGATATGGCAGTGGACGTGGATTTGG------GGATGGCTATAATGGG-TATGGAGGAGG------- 947
Query 666 AACTATGGAGGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTA 739
|.|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ACCT-----GGAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTA 1016
Query 740 CGGTCCAA------------------------------------------------------------------ 747
||||||||
Sbjct 1017 CGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAACTATGGTC 1090
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1091 CAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAGGAGCCGATACTGAGCTTCTTCCTATTTGCCATGGGCT 1164
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1165 TCACTGTATAAATAGGAGAGGATGAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATCGAAATAACAATGTTA 1238
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1239 AGGAAACTCTTATCTCAGTCATGCATAAATATGCAGTGATATGGCAGAAGACACCAGAGCAGATGCAGAGAGCC 1312
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1313 ATTTTGTGAATGGATTGGATTATTTAATAACATTACCTTACTGTGGAGGAAGGATTGTAAAAAAAAATGCCTTT 1386
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1387 GAGACAGTTTCTTAGCTTTTTAATTGTTGTTTCTTTCTAGTGGTCTTTGTAAGAGTGTAGAAGCATTCCTTCTT 1460
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1461 TGATAATGTTAAATTTGTAAGTTTCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTTGAAAAG 1534
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1535 CTATTAGCCAGGATCATGGTGTAATAAGACATAACGTTTTTCCTTTAAAAAAATTTAAGTGCGTGTGTAGAGTT 1608
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1609 AAGAAGCTGTTGTACATTTATGATTTAATAAAATAATTCTAAAGGAAATTGTGTAATTATAGACTTTTTATTTT 1682
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1683 AAATAAGTTAAGGAGTGGGTAGTATAATTAAGGTCCGTTGCAAAGCTGTTGTTATATTTGTATAAGATAAATGC 1756
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1757 TGGTCAGATGTAAGTGTGTTGTCTGCAATTCATCAGGATTAAATTATGTAGATAACTTAAGGGATATCTCTGCA 1830
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1831 AGGAGAAACACCTTTTTAGATCTTTTAGATGCTGCTTCTTCAATGCAAGGAAAGGAAATAACCCCAGCGAGGTA 1904
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1905 CTCTTCAGGGACACAGGTCTAGTACAAGAGAACTCTTGACGGCTACTAAGTTCAGCCAGTCTTAAAAAACTGTG 1978
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1979 CTGTTTCTACAAAACTTTAACTACAGTAGTTTATAAGGATGCCAACGAAAGCTGAGGGTGTAGAGCAAAATAGT 2052
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2053 TCTAAGCTTCAGTTAAACTTCTTTAGGTAAGATCTTATTTACTTTTCCTTTCTTAATTTTCCTCCCTAAAAGAT 2126
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2127 AAACTAATACTCTTAAATGGTCTTTCAGTATAGTGGTTCTTACGTAGTTTAACATAGCTATAAATTGAGTTTAA 2200
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2201 CAATTTATAAACTCAAGAGAATAATTTTTATAAACCCTGTTTTCCAATCTGTCATTTACTTAAATTATTTTGGT 2274
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2275 TGTTTTTCCCTTTTTTTCCTTCTTTTCCCACCCCCTCCCCCTCCATGTGAAGATTTGGGTGCTTAACATATCAT 2348
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2349 TTTTTTCCCTGCCGGAATTTTAGCATTGATATGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAA 2422
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2423 GTGCTTCATTTCAACAGCTGAGGCAAGCCAAGTGATCATTAATAAAGCTTTTCTTGGTTCCTTCAGTGGTGTTG 2496
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2497 GTAGTAAAATGGAAGGTGTCTTGCTGCAGGTAACTAATGAAGAAGTGGTCAACCACAGAGTCTTCAAGAAATAA 2570
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2571 GAAATTCTGTACCATCTGAAAGTAGTTCTTGTTGGTGCCTTCATTTAAAAAGCACTCTTTAAAATAAAAGGGAA 2644
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2645 ATGTTTTCTGATAAAACAAACATTTAGTTGAGGTTCTTGATATAAAACAATTACAAAATGAGTGTTGTTTGTAA 2718
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2719 AACAGTAACATCAAATTGGCTAGAGAGATAAATGTATCATGTTTTAAATTAGGTTTTGTGAGTAGACAGATTAC 2792
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2793 AATTCTATTTTAAATATAAAGTTTATAAAATAAATACTTTTTGTATCCAAATACTTGGTGTAATGTTTACACAT 2866
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2867 AAAATGTGTGAATCTTGTTCTATAAATATTTGGTTGTCTAAAAGATCACCATCCCCTAAATTTTTAAAAGCAGT 2940
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2941 TTCACAAAGCTATGCATATTTTAATATTAACAGGTAAATGAGAAGAGCATTGTGGACATTATTGGCTGTCCCCA 3014
Query 748 --------------------------- 747
Sbjct 3015 ATAAAATGCTGTTCATTATGCACTGTA 3041
