Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10887
- Subject:
- XR_002956425.1
- Aligned Length:
- 3024
- Identities:
- 706
- Gaps:
- 2297
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAAAAGCGGCGGCAGCGGCTCTAGCGGCAGTAGCAGCAGCGCCGGGTCCCGTGCGGAGGTGCTCCTCGCAGAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTTTCTCGAGCAGCGGCAGTTCTCACTACAGCGCCAGGACGAGTCCGGTTCGTGTTCGTCCGCGGAGATCTCT 148
Query 1 -------------------------------------------------ATGGAGAGAGAAAAGGAACAGTTCC 25
|||||||||||||||||||||||||
Sbjct 149 CTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGAGAGAAAAGGAACAGTTCC 222
Query 26 GTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGA 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGA 296
Query 100 AAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTC 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTC 370
Query 174 ATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGACCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAAC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGACCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAAC 444
Query 248 GTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGCTCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATT 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGCTCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATT 518
Query 322 AAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTGAGGAATATGGAAAAATTGATACCATTGAGATAAT 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTGAGGAATATGGAAAAATTGATACCATTGAGATAAT 592
Query 396 TACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATGACCATGATCCTGTGGATAAAA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATGACCATGATCCTGTGGATAAAA 666
Query 470 TCGTATTGCAGAAATACCATACCATCAATGGTCATAATGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCGTATTGCAGAAATACCATACCATCAATGGTCATAATGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATG 740
Query 544 CAGG--------------AGGACCTG---GAGGTGGCAATTTTGG------------AGGTAGCCCCGG----- 583
|||| |||| .|| ||||.|||||.||||| |.||.|...|||
Sbjct 741 CAGGAAGTTCAGAGTTCTAGGA-GTGGAAGAGGAGGCAACTTTGGCTTTGGGGATTCACGTGGTGGCGGTGGAA 813
Query 584 -TTATGGAGGAGGA---------------AGAGGAGGAT---ATGG---TGGTGGAGGACCTGGATATGGCAAC 635
||..|||..|||| |||||||||| |||| |||..|.||||.|||||.|||
Sbjct 814 ATTTCGGACCAGGACCAGGAAGTAACTTTAGAGGAGGATCTGATGGATATGGCAGTGGACGTGGATTTGG---- 883
Query 636 CAGGGTGG-------GGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATTATGGAAGTGGAAATTACA 702
||.||| ||| ||.|||||.|| |.|| ||||||||||||||||||||||||||||
Sbjct 884 --GGATGGCTATAATGGG-TATGGAGGAGG-------ACCT-----GGAGGAAATTATGGAAGTGGAAATTACA 942
Query 703 ATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAA----------------------------- 747
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 ATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGG 1016
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1017 AACATGGGGGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAG 1090
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1091 GAGCCGATACTGAGCTTCTTCCTATTTGCCATGGGCTTCACTGTATAAATAGGAGAGGATGAGAGCCCAGAGGT 1164
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1165 AACAGAACAGCTTCAGGTTATCGAAATAACAATGTTAAGGAAACTCTTATCTCAGTCATGCATAAATATGCAGT 1238
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1239 GATATGGCAGAAGACACCAGAGCAGATGCAGAGAGCCATTTTGTGAATGGATTGGATTATTTAATAACATTACC 1312
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1313 TTACTGTGGAGGAAGGATTGTAAAAAAAAATGCCTTTGAGACAGTTTCTTAGCTTTTTAATTGTTGTTTCTTTC 1386
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1387 TAGTGGTCTTTGTAAGAGTGTAGAAGCATTCCTTCTTTGATAATGTTAAATTTGTAAGTTTCAGGTGACATGTG 1460
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1461 AAACCTTTTTTAAGATTTTTCTCAAAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAACGT 1534
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1535 TTTTCCTTTAAAAAAATTTAAGTGCGTGTGTAGAGTTAAGAAGCTGTTGTACATTTATGATTTAATAAAATAAT 1608
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1609 TCTAAAGGAAATTGTGTAATTATAGACTTTTTATTTTAAATAAGTTAAGGAGTGGGTAGTATAATTAAGGTCCG 1682
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1683 TTGCAAAGCTGTTGTTATATTTGTATAAGATAAATGCTGGTCAGATGTAAGTGTGTTGTCTGCAATTCATCAGG 1756
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1757 ATTAAATTATGTAGATAACTTAAGGGATATCTCTGCAAGGAGAAACACCTTTTTAGATCTTTTAGATGCTGCTT 1830
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1831 CTTCAATGCAAGGAAAGGAAATAACCCCAGCGAGGTACTCTTCAGGGACACAGGTCTAGTACAAGAGAACTCTT 1904
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1905 GACGGCTACTAAGTTCAGCCAGTCTTAAAAAACTGTGCTGTTTCTACAAAACTTTAACTACAGTAGTTTATAAG 1978
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1979 GATGCCAACGAAAGCTGAGGGTGTAGAGCAAAATAGTTCTAAGCTTCAGTTAAACTTCTTTAGGTAAGATCTTA 2052
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2053 TTTACTTTTCCTTTCTTAATTTTCCTCCCTAAAAGATAAACTAATACTCTTAAATGGTCTTTCAGTATAGTGGT 2126
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2127 TCTTACGTAGTTTAACATAGCTATAAATTGAGTTTAACAATTTATAAACTCAAGAGAATAATTTTTATAAACCC 2200
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2201 TGTTTTCCAATCTGTCATTTACTTAAATTATTTTGGTTGTTTTTCCCTTTTTTTCCTTCTTTTCCCACCCCCTC 2274
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2275 CCCCTCCATGTGAAGATTTGGGTGCTTAACATATCATTTTTTTCCCTGCCGGAATTTTAGCATTGATATGAACC 2348
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2349 ATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAGGCAAGCCAAGTGATC 2422
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2423 ATTAATAAAGCTTTTCTTGGTTCCTTCAGTGGTGTTGGTAGTAAAATGGAAGGTGTCTTGCTGCAGGTAACTAA 2496
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2497 TGAAGAAGTGGTCAACCACAGAGTCTTCAAGAAATAAGAAATTCTGTACCATCTGAAAGTAGTTCTTGTTGGTG 2570
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2571 CCTTCATTTAAAAAGCACTCTTTAAAATAAAAGGGAAATGTTTTCTGATAAAACAAACATTTAGTTGAGGTTCT 2644
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2645 TGATATAAAACAATTACAAAATGAGTGTTGTTTGTAAAACAGTAACATCAAATTGGCTAGAGAGATAAATGTAT 2718
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2719 CATGTTTTAAATTAGGTTTTGTGAGTAGACAGATTACAATTCTATTTTAAATATAAAGTTTATAAAATAAATAC 2792
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2793 TTTTTGTATCCAAATACTTGGTGTAATGTTTACACATAAAATGTGTGAATCTTGTTCTATAAATATTTGGTTGT 2866
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2867 CTAAAAGATCACCATCCCCTAAATTTTTAAAAGCAGTTTCACAAAGCTATGCATATTTTAATATTAACAGGTAA 2940
Query 748 ---------------------------------------------------------------- 747
Sbjct 2941 ATGAGAAGAGCATTGTGGACATTATTGGCTGTCCCCAATAAAATGCTGTTCATTATGCACTGTA 3004
