Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10956
- Subject:
- NM_001145803.1
- Aligned Length:
- 1980
- Identities:
- 1132
- Gaps:
- 651
Alignment
Query 1 ATGAACCGATACACAACCATGAGACAGTTGGGGGACGGCACGTATGGGAGTGTGCTTATGGGCAAGAGTAATGA 74
||||||||||||||||||||||..|||.||||.||||||||||||||||||||.||.|||||||||||.|||||
Sbjct 1 ATGAACCGATACACAACCATGAAGCAGCTGGGAGACGGCACGTATGGGAGTGTACTGATGGGCAAGAGCAATGA 74
Query 75 ATCCGGGGAGCTGGTGGCCATCAAAAGGATGAAGAGAAAGTTCTATTCTTGGGATGAATGCATGAACTTGAGAG 148
.||.||||||||||||||.|||||.||||||||||||||||||||||||||||||||.||.|||||||||.|||
Sbjct 75 GTCTGGGGAGCTGGTGGCAATCAAGAGGATGAAGAGAAAGTTCTATTCTTGGGATGAGTGTATGAACTTGCGAG 148
Query 149 AAGTTAAGTCTCTGAAGAAACTTAATCATGCCAATGTTATTAAATTGAAAGAAGTTATCAGAGAAAATGACCAT 222
||||||||||.|||||.|||||.|||||.||||||||.||||||.|.|||||||||||||||||.|||||||||
Sbjct 149 AAGTTAAGTCCCTGAAAAAACTCAATCACGCCAATGTGATTAAACTAAAAGAAGTTATCAGAGAGAATGACCAT 222
Query 223 CTTTATTTTATATTTGAATATATGAAAGAAAACCTCTATCAATTAATGAAAGACAGAAACAAGTTGTTCCCTGA 296
|||||||||.|||||||||||||||||||||||||||||||..|||||||||||||||||||..||||||||||
Sbjct 223 CTTTATTTTGTATTTGAATATATGAAAGAAAACCTCTATCAGCTAATGAAAGACAGAAACAAACTGTTCCCTGA 296
Query 297 ATCAGTCATCAGAAATATTATGTATCAAATATTGCAAGGGCTGGCTTTTATCCATAAACATGGCTTTTTTCATA 370
.||||||||||||||||||||||||||.|||.|.||.||||||||.||||||||||||||.|||||||||||.|
Sbjct 297 GTCAGTCATCAGAAATATTATGTATCAGATACTACAGGGGCTGGCATTTATCCATAAACACGGCTTTTTTCACA 370
Query 371 GGGACATGAAACCAGAAAACTTGCTTTGTATGGGTCCAGAGCTTGTGAAAATTGCTGATTTTGGACTTGCAAGA 444
|||||||||||||.||.||||||||.||.|||||.||||||||.|||||.||||||||||||||||||||||||
Sbjct 371 GGGACATGAAACCTGAGAACTTGCTCTGCATGGGCCCAGAGCTGGTGAAGATTGCTGATTTTGGACTTGCAAGA 444
Query 445 GAATTAAGGTCACAGCCACCATACACTGATTATGTATCTACCAGATGGTATCGTGCCCCTGAAGTTTTACTGAG 518
||||||||.||||||||||||||.|||||.|||||.||||||||||||||.||.||.||||||||.|||||.||
Sbjct 445 GAATTAAGATCACAGCCACCATATACTGACTATGTGTCTACCAGATGGTACCGGGCTCCTGAAGTCTTACTAAG 518
Query 519 ATCTTCAGTTTATAGTTCTCCCATTGATGTGTGGGCTGTTGGAAGTATCATGGCTGAACTCTATATGTTAAGGC 592
.|||||.||.||.||.|||||||||||.||||||||.||.||||||||.|||||.||..|.||||..||.||||
Sbjct 519 GTCTTCGGTGTACAGCTCTCCCATTGACGTGTGGGCCGTGGGAAGTATAATGGCCGAGTTATATACATTTAGGC 592
Query 593 CACTTTTCCCAGGGACAAGTGAGGTCGATGAAATCTTTAAAATTTGCCAAGTTTTAGGGACTCCCAAAAAAAGT 666
|.||||||||||||||||||||.||.|||||.|||||||||||.||||||||.||||||||||||||.||.|||
Sbjct 593 CGCTTTTCCCAGGGACAAGTGAAGTTGATGAGATCTTTAAAATCTGCCAAGTGTTAGGGACTCCCAAGAAGAGT 666
Query 667 GACTGGCCAGAAGGATACCAGCTGGCATCCTCTATGAACTTCCGTTTTCCCCAGTGTGTTCCTATAAACTTAAA 740
||||||||.||||||||||||||.||||||||.|||||||||||.|||||||||||..||||.||.|||.||||
Sbjct 667 GACTGGCCGGAAGGATACCAGCTTGCATCCTCCATGAACTTCCGCTTTCCCCAGTGCATTCCCATCAACCTAAA 740
Query 741 AACTCTTATTCCCAATGCCAGTAATGAAGCTATTCAGCTCATGACCGAAATGTTGAATTGGGATCCAAAGAAAC 814
||||||.||||||||||||||||..||.||.||.|||||||||||.||.|||.||||.||||||||||||||.|
Sbjct 741 AACTCTCATTCCCAATGCCAGTAGCGAGGCCATCCAGCTCATGACAGAGATGCTGAACTGGGATCCAAAGAAGC 814
Query 815 GACCGACAGCAAGCCAGGCATTGAAACACCCATATTTTCAAGTTGGTCAGGTATTAGGCCCTTCGTCAAATCAT 888
||||.|||||||||||||||.||||||||||||||||.|||||.|||||||||.|.|||.||||..||.|.|||
Sbjct 815 GACCAACAGCAAGCCAGGCACTGAAACACCCATATTTCCAAGTCGGTCAGGTACTGGGCTCTTCTGCACACCAT 888
Query 889 CTGGAATCAAAACAGTCTTTAAATAAGCAGCTGCAACCATTAGAATCAAAGCCATCTTTAGTTGA--GGTAGAG 960
|||||..||||||||.|||||.|.|||||||||||.||..|.||..||||||||||||....||| || ||.
Sbjct 889 CTGGATACAAAACAGACTTTACACAAGCAGCTGCAGCCTCTGGAGCCAAAGCCATCTTCCTCTGAACGG--GAT 960
Query 961 CCTAAGCCTCTGCCGGATATAATCGATCAGGTTGTTGGACAACCCCAGCCAAAAACTAGCCAGCAGCCACTGCA 1034
|||||||||.||||..|.|||.|.||||||..||..||.||.||||||||||||....||||.||.||||||||
Sbjct 961 CCTAAGCCTTTGCCAAACATACTTGATCAGCCTGCCGGGCAGCCCCAGCCAAAACAGGGCCACCAACCACTGCA 1034
Query 1035 GCCCATTCAGCCGCCACAGAAC-CTGAGCGTC-CAGCAACCTCCAAAGCAACAGAGTCAGGAGAAACCGCCACA 1106
|.||||||||||.||||||||| | ||.|.| ||.|.|||.||||||||.|||.||||..|||||||.|||||
Sbjct 1035 GACCATTCAGCCACCACAGAACAC--AGTGACTCACCCACCCCCAAAGCAGCAGGGTCACCAGAAACCACCACA 1106
Query 1107 AACGCTATTCCCGAGCATCGTCAAAAACATGCC----AACTAAGCCAAATGGCACACTGAGTCATAAAAGTGGT 1176
|||..|.||.||.||.|||.||||||.|||.|| ||.|.||.|| ||||.|||.|.||||| ||.
Sbjct 1107 AACCATGTTTCCAAGTATCATCAAAACCATCCCAGTGAATTCAGTCA----GCACCCTGGGCCATAA----GGG 1172
Query 1177 A----GGAGGCGTTGGGGTCAGACTATCTTCAAGTCTGGAGATAGCTGGGAAGAGTTGGAGGACTATGATTTCG 1246
| ||||.||.|||||||||||..||||||||||||||||.|||||.||.||..|.|||||| ||.||.|
Sbjct 1173 AGCCCGGAGACGGTGGGGTCAGACAGTCTTCAAGTCTGGAGACAGCTGTGACGACATTGAGGAC---GACTTAG 1243
Query 1247 GAGCCTCCCATTCCAAGAAGCCAAGCATGGGTGTTTTTAAAGAAAAAAGGAAAAAAGATTCTCCATTTCG---T 1317
||||||||||.|||||||||||||||||||..|..|..||.||.|| |||.||.||.||||||||||| |
Sbjct 1244 GAGCCTCCCACTCCAAGAAGCCAAGCATGGAAGCCTGCAAGGAGAA---GAAGAAGGAGTCTCCATTTCGGTTT 1314
Query 1318 CAACAGGTGAAGATGGCTGTTATTTCCCTCTCAGCAC-ACCAGTTTCC---CACGTTA---------------- 1371
| |||.| ||||.|| .|||||.||| |||.|||
Sbjct 1315 C--CAGAT----------------------TCAGGACTCCCAGTCTCCAATCACTTTAAGGGGGAAAATAGGAA 1364
Query 1372 -------------------------------------------------------------------------- 1371
Sbjct 1365 TTTACATGCATCTGTTTCCTTAAAATCTGATCCAAACTTGTCAACTGCTTCAACGGCTAAGCAGTACTATTTGA 1438
Query 1372 -------------------------------------------------------------------------- 1371
Sbjct 1439 AACAATCAAGATACCTTCCAGGTGTGAACCCCAAGAATGTGTCTTTGGTAGCTGGAGGCAAGGATATAAATTCA 1512
Query 1372 -------------------------------------------------------------------------- 1371
Sbjct 1513 CACTCTTGGAATAATCAGCTATTTCCTAAGTCGCTGGGATCCATGGGGGCGGACCTTTCCTTCAAGAGGAGTAA 1586
Query 1372 -------------------------------------------------------------------------- 1371
Sbjct 1587 CGCAGAAGACAGCATAATTAAACCGATTGAAAACCTGTCATGCACTGGGAAGTCTGCCGAGCAGCTAGAGGACC 1660
Query 1372 -------------------------------------------------------------------------- 1371
Sbjct 1661 CACAAGGAAACCTTGGGAGCTACACCACTTACAACCAGACGGGATACATGCCTTCCTTTCTCAAGAAAGAAGTG 1734
Query 1372 -------------------------------------------------------------------------- 1371
Sbjct 1735 GGATCAGCTGGCCAGAGGATCCAATTGGCACCTTTAGGTGCGTCGGCTTCGGACTATACCTGGAGCACAAAAAC 1808
Query 1372 -------------------------------------------------------------------------- 1371
Sbjct 1809 TGGACGAGGCCAGTTTTCGGGACGAACTTACAACCCCACAGCCAAAAATCTCAATATTGTGAACCGCACACAGC 1882
Query 1372 -------------------------------------------------------- 1371
Sbjct 1883 CAGTCCCCTCGGTACACGGGAGGACAGACTGGGTGGCTAAGTATGGAGGCCACCGG 1938
