Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10957
- Subject:
- XR_001779471.1
- Aligned Length:
- 4954
- Identities:
- 887
- Gaps:
- 3951
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCAACAGGGTTCAATTTATTGCTTGGAGCTCTGGCAGCATAAAACTGTCTTCTTTGAATGGAAAATTTGACCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACTGCGATGAGGGGCTGCAGCCAGCGGTTTGCCGCGCGTGCCTGTTTGCCAAAGGAGCCGCCCCGGCGAGGATC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCGGAGGGGAGCCGCTTCAAGCGGGGAGACCCGCAGCCCAGACACGCGCTCTGGGCGGCCTGGATGCGCAAGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCGGCCCCGCAGCCGCTGACAGCCGGCGGCAGCGAAGTTTGGCTGCTGAGCGGCTCGGCGCCGGGCCCCTGGA 296
Query 1 -----------------------------------ATGCCCGTGGGGGGCCTGTTGCCGCTCTTCAGCAGCCCC 39
||||||||||||||||||||||||||||||||.|||||.
Sbjct 297 CAGACTGTCAGCCGGCGGCTACAACCTCCGGAGCGATGCCCGTGGGGGGCCTGTTGCCGCTCTTCAGTAGCCCT 370
Query 40 GCGGGCGGCGTCCTGGGCGGGGGGCTCGGCGG------CGGCGGTGGCAGGAAGGGGTCGGGCCCCGCCGCCCT 107
|.||||||||.|||||||.|.||.||.||||| .|||||.||.|||||||||||.||||||||.|||.|
Sbjct 371 GGGGGCGGCGGCCTGGGCAGTGGCCTGGGCGGGGGGCTTGGCGGCGGGAGGAAGGGGTCTGGCCCCGCTGCCTT 444
Query 108 CCGCCTGACGGAGAAGTTCGTGCTGCTGCTGGTATTCAGCGCCTTCATCACGCTCTGCTTCGGGGCGATCTTCT 181
||||||.||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||
Sbjct 445 CCGCCTCACCGAGAAGTTCGTGCTGCTGCTGGTGTTCAGCGCCTTCATCACGCTCTGCTTCGGGGCAATCTTCT 518
Query 182 TCCTGCCAGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCCACTCCAGCCCCGCCTTGCAGCCGGCCGCCGAC 255
|||||||.||||||||||||||||||||||||||||||||||||||||.|||.||||||||||||.|.||.||.
Sbjct 519 TCCTGCCTGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAG 592
Query 256 CACAAGCCCGGGCCCGGGGCGCGCGCCGAGGACGCGGCCGAGGGGCGAGCCCGGCGCCGCGAGGAGGGGGCACC 329
|||||||||||||.|||||||||.||.|||||.||.|||||||||.|||.|||||.|||||||||.||.||.||
Sbjct 593 CACAAGCCCGGGCTCGGGGCGCGTGCGGAGGATGCCGCCGAGGGGAGAGTCCGGCACCGCGAGGAAGGCGCGCC 666
Query 330 CGGGGACCC-GGAGGCCGCCCTGGAGGACAACTTGGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAA 402
.|||||||| ||| ||.|..|||||.||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGGGACCCTGGA-GCTGGACTGGAAGACAACTTAGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAA 739
Query 403 GCCAAGGAGACCCTGCAGAAGCTGCCCGAGGAGATCCAAAGAGACATCCTACTGGAGAAGAAGAAGGTGGCCCA 476
||||||||||||||||||||||||||.||||||||||||||||||||.||.|||||||||.|.|||||||||||
Sbjct 740 GCCAAGGAGACCCTGCAGAAGCTGCCGGAGGAGATCCAAAGAGACATTCTGCTGGAGAAGGAAAAGGTGGCCCA 813
Query 477 GGACCAGCTGCGTGACAAGGCGCCGTTCAGAGGCCTGCCCCCGGTGGACTTCGTGCCCCCAATCGGGGTGGAGA 550
||||||||||||||||||||..|.|||.||.|||.|||||..||||||||||.|||||||..|||||||.||||
Sbjct 814 GGACCAGCTGCGTGACAAGGATCTGTTTAGGGGCTTGCCCAAGGTGGACTTCCTGCCCCCCGTCGGGGTAGAGA 887
Query 551 GCCGGGAGCCCGCCGACGCCGCCATCCGCGAGAAAAGGGCAAAGATCAAAGAGGAAATTGAAGCCAGGAAGGGG 624
.||||||||||||.||||||.|||||||.|||||.||||||||||||||||
Sbjct 888 ACCGGGAGCCCGCTGACGCCACCATCCGTGAGAAGAGGGCAAAGATCAAAG----------------------- 938
Query 625 CAAGCAAATTGCCCAGGGTCGAGCAGCTCCTGCGAGGTTGAAATCCAGATGATGAAACATGCTTGGAATAATTA 698
|||||||||..|||||||||||||||||
Sbjct 939 ----------------------------------------------AGATGATGACCCATGCTTGGAATAATTA 966
Query 699 TAAAGGTTATGCCTGGGGATTAAATGAACTCAAACCTATATCAAAAGGAGGCCATTCAAGCAGTTTGTTTGGTA 772
||||.|.|||||.|||||.||.||.|||||.||||||||||||||||.||||||||||||||||||||||||.|
Sbjct 967 TAAACGCTATGCGTGGGGCTTGAACGAACTGAAACCTATATCAAAAGAAGGCCATTCAAGCAGTTTGTTTGGCA 1040
Query 773 ACATCAAAGGAGCAACTATAGTAGATGCCCTGGATACACTTTTTATTATGGAAATGAA-ACATGAATTTGAAGA 845
|||||||||||||.||.||||||||||||||||||||.|||||.|||||||..||||| || |||||||.||||
Sbjct 1041 ACATCAAAGGAGCTACAATAGTAGATGCCCTGGATACCCTTTTCATTATGGGCATGAAGAC-TGAATTTCAAGA 1113
Query 846 AGCAAAATCATGGGTTGAAGAAAATTTAGATTTTAATGTGAATGCTGAAATTTCTGTCTTTGAAGTAAATATAC 919
|||.|||||.|||.||.||.||.||||||||||||||||||||||||||.|||||||.||||||||.||.||||
Sbjct 1114 AGCTAAATCGTGGATTAAAAAATATTTAGATTTTAATGTGAATGCTGAAGTTTCTGTTTTTGAAGTCAACATAC 1187
Query 920 GCTTTGTTGGTGGACTACTCTCAGCCTACTATCTGTCTGGAGAAGAGATTTT----TCGAAAGAAAGCAGTGGA 989
||||.||.||||||||.||.||||||||||||.||||.|||||.||| | ||| .|.|||
Sbjct 1188 GCTTCGTCGGTGGACTGCTGTCAGCCTACTATTTGTCCGGAGAGGAG----TGGGATCG---------GGCGGA 1248
Query 990 ACT-----TGGG---------------GTA---------AAATTGCTAC-CTGCATTT----------CA-TAC 1022
||| |||| ||| ||.|||..|| |||||||| || |..
Sbjct 1249 ACTGGCCCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCGAATTTGGAACTCTGCATTTAGAGTTTATGCACTTG 1322
Query 1023 TCCC-----TCTGGAATACCTTGGGCA----TTGCTGAA-----TATGAAAA---------GGTGGA------T 1067
|||| ||.|| |.||| || ||||.||| |||||||| .||.|| |
Sbjct 1323 TCCCACTTATCAGG-AGACC-----CAGTCTTTGCCGAAAAGGTTATGAAAATTCGAACAGTGTTGAACAAACT 1390
Query 1068 GTGCAA-------------TATCCCAAGGGCTATGGAGGCT--ACCATA------------------------- 1101
|..||| |||||.|| |||| || |||..|
Sbjct 1391 GGACAAACCAGAAGGCCTTTATCCTAA---CTAT-----CTGAACCCCAGTAGTGGACAGTGGGGTCAACATCA 1456
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1457 TGTGTCGGTTGGAGGACTTGGAGACAGCTTTTATGAATATTTGCTTAAGGCGTGGTTAATGTCTGACAAGACAG 1530
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1531 ATCTCGAAGCCAAGAAGATGTATTTTGATGCTGTTCAGGCCATCGAGACTCACTTGATCCGCAAGTCAAGTGGG 1604
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1605 GGACTAACGTACATCGCAGAGTGGAAGGGGGGCCTCCTGGAACACAAGATGGGCCACCTGACGTGCTTTGCAGG 1678
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1679 AGGCATGTTTGCACTTGGGGCAGATGGAGCTCCGGAAGCCCGGGCCCAACACTACCTTGAACTCGGAGCTGAAA 1752
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1753 TTGCCCGCACTTGTCATGAATCTTATAATCGTACATATGTGAAGTTGGGACCGGAAGCGTTTCGATTTGATGGC 1826
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1827 GGTGTGGAAGCTATTGCCACGAGGCAAAATGAAAAGTATTACATCTTACGGCCCGAGGTCATCGAGACATACAT 1900
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1901 GTACATGTGGCGACTGACTCACGACCCCAAGTACAGGACCTGGGCCTGGGAAGCCGTGGAGGCTCTAGAAAGTC 1974
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1975 ACTGCAGAGTGAACGGAGGCTACTCAGGCTTACGGGATGTTTACATTGCCCGTGAGAGTTATGACGATGTCCAG 2048
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2049 CAAAGTTTCTTCCTGGCAGAGACACTGAAGTATTTGTACTTGATATTTTCCGATGATGACCTTCTTCCACTAGA 2122
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2123 ACACTGGATCTTCAACACCGAGGCTCATCCTTTCCCTATACTCCGTGAACAGAAGAAGGAAATTGATGGCAAAG 2196
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2197 AGAAATGAAAGACATTTTCTATTTTACTCTGCTTCGTTCCCTCACTGCATACCTTAATAATTCCTTTTCTGGTA 2270
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2271 ATCAGACATATGATGAACTCTTATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGT 2344
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2345 CTTTTATGTTTAGTGCCATAAGCCTAGGTGGACCTCAATTCCTTATTCAGCTAGTAGATCCACAGATTCTGCCT 2418
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2419 GTCTTTTTCTTTTTCTCAAGGAATCTATTGTTTCTGAAATTCATAAAGTTGCAAAATCATTTTCATAATAGAAC 2492
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2493 CGTCTACCAGTGACCTCTTGATTATGATTTGATTTGACTGCAAAACTTCTTCCTCCTCTATGAGGAGATGCTGT 2566
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2567 CTGCTTCGAGCTGTAATGTTTTGCCATGTTGCAAAAAGCCATAATAATAAATTAAGTATTTAAAAAAAAAAAGC 2640
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2641 TTTTTTTTCCTTTTCAAGTTCATGTTAATCTGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGC 2714
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2715 CTCTTAGCAGGTCTATCGTTATTTGATAGAATGTCTTCTAGAGTACTCCACTCTCATTGTGATTCAGATGAGAA 2788
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2789 AGCCATCCCAGAAGAGCTGGCGACACTGGCCTCATCTCTTCACAAGTGCAGTATCTTCTTATTGGGTGATTATG 2862
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2863 TTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCTAAATGCCCTGTGTCATCTCTGTATCACATACT 2936
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2937 GCTTAATTTCTCCCATCACCCACGACACAGCAAGGGGAGCTCCTGAGTTATGCAGAATGCCAGGTTACCCAATT 3010
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3011 ACAATTTTGAAAGAGAAAAGACCTAACTTCTAACATGCCAGGTTTTCCTTTTTAATGAATCCATTCCAAAATCT 3084
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3085 CCTCTCTAAAAAGAGAGGGAGAATTCCATATGACTAGCTCATGGGTATACATTTCCTCTTTGGGTCTCTTTAAG 3158
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3159 CAAAGGATGCATTGCACTTGGTTCAGATCTGAAAAGGTCTCTTCCCAGGTGTAGCTCATCATTGAACTTCAGTT 3232
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3233 TATGAACATGAGCTTTTACCCAGTGAAAAAAGCATTTCTGATTTACCTACTCCTATTCAGCTAAAGGAGAAAGT 3306
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3307 AAAATCTAATTAACTCTTAAGGACACACTGTATTAAATGTGCTTACATTCCACATAAAGATCTTAACTTACAAA 3380
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3381 TAATTTATAGGGATGGATCCACTCCCTCATAATTTGATCTGCAACAGATCAAAATGATTATATGATTCTTCTAA 3454
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3455 ACCTTATCTTGAACTATGAATGATTTTCCCAAGGACAAATTTTGTGATAGCTTGTGTTACCACACCTGTTCTTT 3528
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3529 ATATGAAAGATCAGATATGATTCATATGTACTGAAAGACAAAGACAAGAACCACCTCAATTTCAACCTACTATG 3602
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3603 GTCAATAAACAACAAAAACAAATAATACAGATCCATGGATTAGGCTAAAGTATATATTTCTGTGCACTTACTTT 3676
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3677 TTTCAAAATGTCTAATTTTATCAATTTCTTATGGTACAACCTATTTTTTGAGACATTTGTTTTCTTAAATCTGA 3750
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3751 GTAGACAATAGTTTCACCTATTTCAGCTTTGGGGATGGTTTCAAAAGATGTTATTTTGAATCACTACCTTGTAT 3824
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3825 GCCCTGGTTGTCTCCAGTATAATACACTAGAACACATCAAAACAAAACAGTAAAATTAGTAAATGGAAAAGATC 3898
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3899 CCTCAGTATATCATTTTGACTATATTAACACATCTCTGCTACCCAGAGAAGCTTCTGCCTGTAATCTATTCAGT 3972
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3973 CTCTGGAGGTTATGAACCCATGACATCATTTTGATGAAACTGAATAGAACAGTCTGCCTTACCTCTTCATTACA 4046
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4047 ACTTGATTTGACTGTAAAACTTTTCCCTCCGTGAGGAAGAACACGTGAACAACAGATCCTTCCTTCCCTAGAGC 4120
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4121 TCAGAGGTAAAATGTTAAAATTTGCTGCCAAAATTTGGTCACCTGTATTTTTATTATAATTTTCACTGCCCTTA 4194
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4195 GATTAGCTATTTAATTCATTTTCTTTGCATTTCAATTTGAAGGAGCATCCACAGCTGGTGATTATTTCTGCAGC 4268
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4269 AGGAGGGGTTTCAAAGGCATGCGCTGTGTACCTGCTACACTGTAATGCAGCTTTTATGTTCCACTATAAGCAGG 4342
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4343 GAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAAAACCAGATCTCAGAACACCAAAA 4416
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4417 ACTTAAACGAGATAAGAGATTAATTTTATAGAAATGTAACTGATTAAGCTTATGTTTTGTGTTAATTTTAAACA 4490
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4491 ACGGAAGTCTCCAAATACATACCAACGCATTCATTTTCAACAAAGTTGATTTACATGTATAATCCACACCCTTA 4564
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4565 AAGATGAACAGTTAGAGTAGCACCCAGTTTTGTGTTTACAAAACCTGTTTTGATATACTATATTATACATAGAA 4638
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4639 GTTGTATGCCAATTTATAGAACTCAGTGACTTCTCTATTATGTGTATCATCCATTTTTTACATTGATTGTTTTT 4712
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4713 GATTTGTTCATAAGAGCATTCTGTCATTTCCAACTTTATATAAATCTCTGATGTTATGGAAAACATAATAGATT 4786
Query 1102 ---------------------------------------------------------------------- 1101
Sbjct 4787 GACACATAATTTTTAAAAATTATATTTGTAAAATTTCTCTATTGTGAATAAAGTCTTTTAATATACCTCC 4856
