Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11102
Subject:
NR_159808.1
Aligned Length:
3269
Identities:
1275
Gaps:
1987

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCGAGTAGCTGCGATTACAGGCATGCGCCACCACGCCCGGCTAATTTTATATTTTTAGTAGAGACGGGGTTCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCATGTTGGTCAGGCTGATCTCGAACTCCCGACCTCAGGTGATCAGCCCACCTCGGCCTCCCAAATTGCTGGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTACAGTCGTGAGCCACCGCGCCCGGCCAGGGAGGGACACTTTCTGTAAACTCCCCAAAGTGCGGACTCCAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTGTGCACTTTGGAGGTCCTGAGCTCCCGGTTATGTATTGAATGCAGTAAAGATTTATGTGTGATCACCCACCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGGATTTCCCCAAAAGCTGGACCTGGCCTACTATTTGGTGTATGTGTGTGTTTAAATGGTTATTGGGAAATGG  370

Query    1  -------------------------ATGAGG--GAGCCGGAAGAG---------------CTGATGCCCGATTC  32
                                     ||||.|  |.|||..||.||               |.|||  |.|||||
Sbjct  371  TAGGGGTTTTTAGTCTTTCTTCAAAATGACGCTGTGCCACAACAGTTTGTGAATACTACTCAGAT--CAGATTC  442

Query   33  GGGTGCTGTGTTTACATTTGGGAAAAGTAAATTTGCTGAAAATAATCCCGGTAAATTCTGGTTTAAAAATGATG  106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  GGGTGCTGTGTTTACATTTGGGAAAAGTAAATTTGCTGAAAATAATCCCGGTAAATTCTGGTTTAAAAATGATG  516

Query  107  TCCCTGTACATCTTTCATGTGGAGATGAACATTCTGCTGTTGTTACCGGAAATAATAAACTTTACATGTTTGGC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  517  TCCCTGTACATCTTTCATGTGGAGATGAACATTCTGCTGTTGTTACCGGAAATAATAAACTTTACATGTTTGGC  590

Query  181  AGTAACAACTGGGGTCAGTTAGGATTAGGATCAAAGTCAGCCATCAGCAAGCCAACATGTGTCAAAGCTCTAAA  254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  591  AGTAACAACTGGGGTCAGTTAGGATTAGGATCAAAGTCAGCCATCAGCAAGCCAACATGTGTCAAAGCTCTAAA  664

Query  255  ACCTGAAAAAGTGAAATTAGCTGCCTGTGGAAGGAACCACACCCTGGTGTCAACAGAAGGAGGCAATGTATATG  328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  ACCTGAAAAAGTGAAATTAGCTGCCTGTGGAAGGAACCACACCCTGGTGTCAACAGAAGGAGGCAATGTATATG  738

Query  329  CAACTGGTGGAAATAATGAAGGACAGTTGGGGCTTGGTGACACCGAAGAAAGAAACACTTTTCATGTAATTAGC  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  739  CAACTGGTGGAAATAATGAAGGACAGTTGGGGCTTGGTGACACCGAAGAAAGAAACACTTTTCATGTAATTAGC  812

Query  403  TTTTTTACATCCGAGCATAAGATTAAGCAGCTGTCTGCTGGATCTAATACTTCAGCTGCCCTAACTGAGGATGG  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  813  TTTTTTACATCCGAGCATAAGATTAAGCAGCTGTCTGCTGGATCTAATACTTCAGCTGCCCTAACTGAGGATGG  886

Query  477  AAGACTTTTTATGTGGGGTGACAATTCCGAAGGGCAAATTGGTTTAAAAAATGTAAGTAATGTCTGTGTCCCTC  550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  887  AAGACTTTTTATGTGGGGTGACAATTCCGAAGGGCAAATTGGTTTAAAAAATGTAAGTAATGTCTGTGTCCCTC  960

Query  551  AGCAAGTGACCATTGGGAAACCTGTCTCCTGGATCTCTTGTGGATATTACCATTCAGCTTTTGTAACAACAGAT  624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  961  AGCAAGTGACCATTGGGAAACCTGTCTCCTGGATCTCTTGTGGATATTACCATTCAGCTTTTGTAACAACAGAT  1034

Query  625  GGTGAGCTATATGTGTTTGGAGAACCTGAGAATGGGAAGTTAGGTCTTCCCAATCAGCTCCTGGGCAATCACAG  698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035  GGTGAGCTATATGTGTTTGGAGAACCTGAGAATGGGAAGTTAGGTCTTCCCAATCAGCTCCTGGGCAATCACAG  1108

Query  699  AACACCCCAGCTGGTGTCTGAAATTCCGGAGAAGGTGATCCAAGTAGCCTGTGGTGGAGAGCATACTGTGGTTC  772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109  AACACCCCAGCTGGTGTCTGAAATTCCGGAGAAGGTGATCCAAGTAGCCTGTGGTGGAGAGCATACTGTGGTTC  1182

Query  773  TCACGGAGAATGCTGTGTATACCTTTGGGCTGGGACAATTTGGTCAGCTGGGTCTTGGCACTTTTCTTTTTGAA  846
            |||||                                                                     
Sbjct 1183  TCACG---------------------------------------------------------------------  1187

Query  847  ACTTCAGAACCCAAAGTCATTGAGAATATTAGGGATCAAACAATAAGTTATATTTCTTGTGGAGAAAATCACAC  920
                                                                                      
Sbjct 1188  --------------------------------------------------------------------------  1187

Query  921  AGCTTTGATAACAGATATCGGCCTTATGTATACTTTTGGAGATGGTCGCCACGGAAAATTAGGACTTGGACTGG  994
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188  -------------GATATCGGCCTTATGTATACTTTTGGAGATGGTCGCCACGGAAAATTAGGACTTGGACTGG  1248

Query  995  AGAATTTTACCAATCACTTCATTCCTACTTTGTGCTCTAATTTTTTGAGGTTTATAGTTAAATTGGTTGCTTGT  1068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249  AGAATTTTACCAATCACTTCATTCCTACTTTGTGCTCTAATTTTTTGAGGTTTATAGTTAAATTGGTTGCTTGT  1322

Query 1069  GGTGGATGTCACATGGTAGTTTTTGCTGCTCCTCATCGTGGTGTGGCAAAAGAAATTGAATTCGATGAAATAAA  1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323  GGTGGATGTCACATGGTAGTTTTTGCTGCTCCTCATCGTGGTGTGGCAAAAGAAATTGAATTCGATGAAATAAA  1396

Query 1143  TGATACTTGCTTATCTGTGGCGACTTTTCTGCCGTATAGCAGTTTAACCTCAGGAAATGTACTGCAGAGGACTC  1216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397  TGATACTTGCTTATCTGTGGCGACTTTTCTGCCGTATAGCAGTTTAACCTCAGGAAATGTACTGCAGAGGACTC  1470

Query 1217  TATCAGCACGTATGCGGCGAAGAGAGAGGGAGAGGTCTCCAGATTCTTTTTCAATGAGGAGAACACTACCTCCA  1290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471  TATCAGCACGTATGCGGCGAAGAGAGAGGGAGAGGTCTCCAGATTCTTTTTCAATGAGGAGAACACTACCTCCA  1544

Query 1291  ATAGAAGGGACTCTTGGCCTTTCTGCTTGTTTTCTCCCCAATTCAGTCTTTCCACGATGTTCTGAGAGAAACCT  1364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545  ATAGAAGGGACTCTTGGCCTTTCTGCTTGTTTTCTCCCCAATTCAGTCTTTCCACGATGTTCTGAGAGAAACCT  1618

Query 1365  CCAAGAGAGTGTCTTATCTGAACAGGACCTCATGCAGCCAGAGGAACCA-------------------------  1413
            |||||||||||||||||||||||||||||||||||||||||||||||||                         
Sbjct 1619  CCAAGAGAGTGTCTTATCTGAACAGGACCTCATGCAGCCAGAGGAACCAGATTATTTGCTAGATGAAATGACCA  1692

Query 1414  -------------------------------------------------------------------GACACAC  1420
                                                                               |||||||
Sbjct 1693  AAGAAGCAGAGATAGATAATTCTTCAACTGTAGAAAGCCTTGGAGAAACTACTGATATCTTAAACATGACACAC  1766

Query 1421  ATCATGAGCCTGAATTCCAA------------------------------------------------------  1440
            ||||||||||||||||||||                                                      
Sbjct 1767  ATCATGAGCCTGAATTCCAATGAAAAGTCATTAAAATTATCACCAGTTCAGAAACAAAAGGATCATGAATTTTC  1840

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1841  TAAAACTGAGGAACTAAAACTAGAAGATGTGGATGAGGAAATTAATGCTGAAAATGTGGAAAGCAAGAAGAAAA  1914

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1915  CTGTGGGAGATGATGAAAGTGTTCCTACAGGTTATCACAGTAAAACAGAAGGAGCAGAAAGAACCAATGATGAT  1988

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 1989  AGCTCAGCTGAAACTATTGAAAAGAAAGAAAAAGCCAACCTAGAGGAACGGGCCATTTGTGAGTACAATGAAAA  2062

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2063  CCCAAAAGGATACATGCTTGATGATGCAGATAGCAGTTCATTAGAAATCCTAGAAAACAGTGAAACAACACCAA  2136

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2137  GCAAAGACATGAAAAAAACAAAGAAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCT  2210

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2211  TGGCTCACCACAATCCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAG  2284

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2285  GCATGTGCCACCATGCCTGGCTGATTTTGTACTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTC  2358

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2359  TCAAACTCCTGACCTCAGGTGATCCGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCAT  2432

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2433  GCCCAGCAGATTTTTCTGTTCAAAAGAGTCCCCTCAATAAATCAAAAGATTGTCAAGAATAACAATGAGCCGCT  2506

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2507  CCCAGAGATAAAATCCATAGGAGACCAGATCATTTTAAAAAGTGATAATAAAGATGCCGACCAGAACCACATGA  2580

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2581  GTCAGAATCATCAGAATATCCCACCAACAAATACAGAGAGAAGATCAAAATCCTGTACAATACTATAAATATAT  2654

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2655  ATTTATGTTTTCACAGTCACCAAGTGTATTGTAATGTATACTTGAAAAATGTTATAACTTATGAAGTAAAGTTT  2728

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2729  CTGATAGTAGTCTTTAAAAGATATAAGACTTAATATGTTTTATTCAGCTTCTATAAGTGTGACCAGTTTTGATA  2802

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2803  TTTATTTATGCTAATATTTTTAACAAGTCATTTCAAAATATGTGTATCTCAAATTCTCCCTAAAGTGTTGTGGC  2876

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2877  CTTAACTGTTCAGTATTGCAATAAAAAATATATTTTTATATGTGGAAAATTGAAATAAGATATTTCCTAGTTTT  2950

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 2951  TACTAAACAATTTTACTTCTTTATAATTTTATAAGGCAATATTTGCAATCTTACGACACTGTAACAGTTTTTGA  3024

Query 1441  --------------------------------------------------------------------------  1440
                                                                                      
Sbjct 3025  TGTATTTACAATTTTTACAAAACTGAGGTAAAATTGTTTATAATGAACATATTTTAATAAACTATATCTGGTCA  3098

Query 1441  -------------  1440
                         
Sbjct 3099  GTTCCACTGTTAA  3111

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