Construct: ORF ccsbBroadEn_11102

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015788.1_s300c1, BRDN0000392852
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPGR (6103)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6103 RPGR retinitis pigmentosa GTPase... NM_001367247.1 68.1% 67.3% 1414_1505del;1533_2112del
2 human 6103 RPGR retinitis pigmentosa GTPase... NM_001367249.1 68% 67.1% 308_309insAGA;1411_1502del;1530_2109del
3 human 6103 RPGR retinitis pigmentosa GTPase... NM_001367250.1 68% 67% 619_620insCAG;1411_1502del;1530_2109del
4 human 6103 RPGR retinitis pigmentosa GTPase... NM_001367248.1 66.4% 65.4% (many diffs)
5 human 6103 RPGR retinitis pigmentosa GTPase... NM_001367251.1 59.3% 58.5% 1058_1059ins186;1228_1319del;1347_1926del
6 human 6103 RPGR retinitis pigmentosa GTPase... NM_000328.3 58.8% 58.1% 1414_1505del;1533_2445del
7 human 6103 RPGR retinitis pigmentosa GTPase... NM_001367245.1 58.7% 57.9% 619_620insCAG;1411_1502del;1530_2442del
8 human 6103 RPGR retinitis pigmentosa GTPase... NR_159807.1 54.7% 1_142del;1583_2628del
9 human 6103 RPGR retinitis pigmentosa GTPase... NM_001367246.1 51.2% 50.5% 1058_1059ins186;1228_1319del;1347_2259del
10 human 6103 RPGR retinitis pigmentosa GTPase... NR_159806.1 50.1% 1_142del;1556_1647del;1675_2872del
11 human 6103 RPGR retinitis pigmentosa GTPase... NR_159804.1 49.1% (many diffs)
12 human 6103 RPGR retinitis pigmentosa GTPase... NR_159805.1 48% 1_142del;1556_1647del;1675_2999del
13 human 6103 RPGR retinitis pigmentosa GTPase... NR_159803.1 43.8% (many diffs)
14 human 6103 RPGR retinitis pigmentosa GTPase... NM_001034853.2 41.6% 41.1% 1414_1505del;1533_3456del
15 human 6103 RPGR retinitis pigmentosa GTPase... NR_159808.1 39% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1506
ORF length:
1440
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG GGAGCCGGAA GAGCTGATGC CCGATTCGGG TGCTGTGTTT ACATTTGGGA
121AAAGTAAATT TGCTGAAAAT AATCCCGGTA AATTCTGGTT TAAAAATGAT GTCCCTGTAC
181ATCTTTCATG TGGAGATGAA CATTCTGCTG TTGTTACCGG AAATAATAAA CTTTACATGT
241TTGGCAGTAA CAACTGGGGT CAGTTAGGAT TAGGATCAAA GTCAGCCATC AGCAAGCCAA
301CATGTGTCAA AGCTCTAAAA CCTGAAAAAG TGAAATTAGC TGCCTGTGGA AGGAACCACA
361CCCTGGTGTC AACAGAAGGA GGCAATGTAT ATGCAACTGG TGGAAATAAT GAAGGACAGT
421TGGGGCTTGG TGACACCGAA GAAAGAAACA CTTTTCATGT AATTAGCTTT TTTACATCCG
481AGCATAAGAT TAAGCAGCTG TCTGCTGGAT CTAATACTTC AGCTGCCCTA ACTGAGGATG
541GAAGACTTTT TATGTGGGGT GACAATTCCG AAGGGCAAAT TGGTTTAAAA AATGTAAGTA
601ATGTCTGTGT CCCTCAGCAA GTGACCATTG GGAAACCTGT CTCCTGGATC TCTTGTGGAT
661ATTACCATTC AGCTTTTGTA ACAACAGATG GTGAGCTATA TGTGTTTGGA GAACCTGAGA
721ATGGGAAGTT AGGTCTTCCC AATCAGCTCC TGGGCAATCA CAGAACACCC CAGCTGGTGT
781CTGAAATTCC GGAGAAGGTG ATCCAAGTAG CCTGTGGTGG AGAGCATACT GTGGTTCTCA
841CGGAGAATGC TGTGTATACC TTTGGGCTGG GACAATTTGG TCAGCTGGGT CTTGGCACTT
901TTCTTTTTGA AACTTCAGAA CCCAAAGTCA TTGAGAATAT TAGGGATCAA ACAATAAGTT
961ATATTTCTTG TGGAGAAAAT CACACAGCTT TGATAACAGA TATCGGCCTT ATGTATACTT
1021TTGGAGATGG TCGCCACGGA AAATTAGGAC TTGGACTGGA GAATTTTACC AATCACTTCA
1081TTCCTACTTT GTGCTCTAAT TTTTTGAGGT TTATAGTTAA ATTGGTTGCT TGTGGTGGAT
1141GTCACATGGT AGTTTTTGCT GCTCCTCATC GTGGTGTGGC AAAAGAAATT GAATTCGATG
1201AAATAAATGA TACTTGCTTA TCTGTGGCGA CTTTTCTGCC GTATAGCAGT TTAACCTCAG
1261GAAATGTACT GCAGAGGACT CTATCAGCAC GTATGCGGCG AAGAGAGAGG GAGAGGTCTC
1321CAGATTCTTT TTCAATGAGG AGAACACTAC CTCCAATAGA AGGGACTCTT GGCCTTTCTG
1381CTTGTTTTCT CCCCAATTCA GTCTTTCCAC GATGTTCTGA GAGAAACCTC CAAGAGAGTG
1441TCTTATCTGA ACAGGACCTC ATGCAGCCAG AGGAACCAGA CACACATCAT GAGCCTGAAT
1501TCCAATGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1561gttgcaacga ac

Download FASTA (ORF) (Full)

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