Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11139
- Subject:
- NM_001184832.2
- Aligned Length:
- 3313
- Identities:
- 1230
- Gaps:
- 2039
Alignment
Query 1 ATGTCACTGAACAACTCTTCCAATGTATTTCTGGATTCAGTGCCCAGTAATACCAATCGCTTTCAAGTTAGTGT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACTGAACAACTCTTCCAATGTATTTCTGGATTCAGTGCCCAGTAATACCAATCGCTTTCAAGTTAGTGT 74
Query 75 CATAAATGAGAACCATGAGAGCAGTGCAGCTGCAGATGACAATACTGACCCACCACATTATGAAGAAACCTCTT 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CATAAATGAGAACCATGAGAGCAGTGCAGCTGCAGATGACAATACTGACCCACCACATTATGAAGAAACCTCTT 148
Query 149 TTGGGGATGAAGCTCAGAAAAGACTCAGAATCAGCTTTAGGCCTGGGAATCAGGAGTGCTATGACAATTTCCTC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTGGGGATGAAGCTCAGAAAAGACTCAGAATCAGCTTTAGGCCTGGGAATCAGGAGTGCTATGACAATTTCCTC 222
Query 223 CAAAGTGGAGAAACTGCTAAAACAGATGCCAGTTTTCACGCTTATGATTCTCACACAAACACATACTATCTACA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAAAGTGGAGAAACTGCTAAAACAGATGCCAGTTTTCACGCTTATGATTCTCACACAAACACATACTATCTACA 296
Query 297 AACTTTTGGCCACAACACCATGGATGCCGTTCCCAAGATAGAGTACTATCGTAACACCGGCAGCATCAGTGGGC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AACTTTTGGCCACAACACCATGGATGCCGTTCCCAAGATAGAGTACTATCGTAACACCGGCAGCATCAGTGGGC 370
Query 371 CCAAGGTCAACCGACCCAGCCTGCTTGAGATTCACGAGCAACTCGCAAAGAATGTGGCAGTCACCCCAAGTTCA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCAAGGTCAACCGACCCAGCCTGCTTGAGATTCACGAGCAACTCGCAAAGAATGTGGCAGTCACCCCAAGTTCA 444
Query 445 GCTGACAGAGTTGCTAACGGTGATGGGATACCTGGAGATGAACAAGCTGAAAATAAGGAAGATGATCAAGCTGG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCTGACAGAGTTGCTAACGGTGATGGGATACCTGGAGATGAACAAGCTGAAAATAAGGAAGATGATCAAGCTGG 518
Query 519 TGTTGTGAAGTTTGGATGGGTGAAAGGTGTGCTGGTAAGATGCATGCTGAACATCTGGGGAGTCATGCTCTTCA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGTTGTGAAGTTTGGATGGGTGAAAGGTGTGCTGGTAAGATGCATGCTGAACATCTGGGGAGTCATGCTCTTCA 592
Query 593 TTCGCCTCTCCTGGATTGTTGGAGAAGCTGGAATTGGTCTTGGAGTTCTCATAATTCTTCTTTCCACCA----- 661
||||||||||||||||||||||||||||||||||||||||||||||..||||.|||...|| |
Sbjct 593 TTCGCCTCTCCTGGATTGTTGGAGAAGCTGGAATTGGTCTTGGAGTCATCATCATTGGCCT-------AAGTGT 659
Query 662 --TGGTAACTTCTATTACTGGGTTGTCAACTTCTGCGA-TAGCAACTAACGGGTTTGTTCGTGGAGGTGGGGCC 732
|.|||||..|..|.||.||..|.||.|..|||||.| |.|| ||.||.||..|.||..|.||||||||||||
Sbjct 660 GGTAGTAACGACACTCACAGGTATTTCTATGTCTGCTATTTGC-ACGAATGGAGTAGTAAGAGGAGGTGGGGCC 732
Query 733 TACTATCTTATTTCCAGAAGTTTAGGGCCCGAGTTCGGTGGGTCAATAGGCCTGATCTTTGCTTTTGCTAATGC 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TACTATCTTATTTCCAGAAGTTTAGGGCCCGAGTTCGGTGGGTCAATAGGCCTGATCTTTGCTTTTGCTAATGC 806
Query 807 AGTGGCTGTTGCTATGTATGTGGTGGGATTTGCTGAGACTGTAGTAGATCTTCTTAAGGAGAGTGATTCGATGA 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 AGTGGCTGTTGCTATGTATGTGGTGGGATTTGCTGAGACTGTAGTAGATCTTCTTAAGGAGAGTGATTCGATGA 880
Query 881 TGGTGGATCCAACCAATGACATCCGGATTATAGGCTCCATCACAGTGGTGATTCTTCTAGGAATTTCAGTAGCT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TGGTGGATCCAACCAATGACATCCGGATTATAGGCTCCATCACAGTGGTGATTCTTCTAGGAATTTCAGTAGCT 954
Query 955 GGAATGGAATGGGAGGCAAAGGCCCAAGTCATTCTTCTGGTCATTCTTCTAATTGCTATTGCAAACTTCTTCAT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GGAATGGAATGGGAGGCAAAGGCCCAAGTCATTCTTCTGGTCATTCTTCTAATTGCTATTGCAAACTTCTTCAT 1028
Query 1029 TGGAACTGTCATTCCATCCAACAATGAGAAAAAGTCCAGAGGTTTCTTTAATTACCAAGCATCAATATTTGCAG 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TGGAACTGTCATTCCATCCAACAATGAGAAAAAGTCCAGAGGTTTCTTTAATTACCAAGCATCAATATTTGCAG 1102
Query 1103 AAAACTTTGGGCCACGCTTCACAAAGGGTGAAGGCTTCTTCTCTGTCTTTGCCATTTTTTTCCCAGCAGCTACT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 AAAACTTTGGGCCACGCTTCACAAAGGGTGAAGGCTTCTTCTCTGTCTTTGCCATTTTTTTCCCAGCAGCTACT 1176
Query 1177 GGGATTCTTGCTGGTGCCAATATCTCAGGAGATTTGGAGG-----------------CACTGAGGAAACAAGGA 1233
|||||||||||||||||||||||||||||||||||||||| |.|.||||||.||.|..
Sbjct 1177 GGGATTCTTGCTGGTGCCAATATCTCAGGAGATTTGGAGGATCCCCAAGATGCCATCCCCAGAGGAACCATGCT 1250
Query 1234 G--------CTTCACCTCT----CC--CTCA-----------------AGGAGCTCAGAGT----CGAAGGA-- 1270
| |.|||||.|| || ||.| |||.|| |.|.|| ||| ||
Sbjct 1251 GGCCATTTTCATCACCACTGTTGCCTACTTAGGGGTTGCAATTTGTGTAGGGGC-CTGTGTGGTCCGA--GATG 1321
Query 1271 ------GGA--------GACAGACTTCCCTTATA---------------------------------------- 1290
||| |||| ||.|.||.
Sbjct 1322 CCACCGGGAACATGAATGACA-----CCATCATTTCTGGGATGAACTGCAATGGTTCAGCAGCATGTGGGTTGG 1390
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1391 GCTATGACTTCTCAAGATGTCGACATGAACCATGTCAGTACGGGCTGATGAACAATTTCCAGGTCATGAGCATG 1464
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1465 GTATCAGGGTTCGGCCCCCTCATCACTGCGGGAATCTTTTCTGCAACACTCTCCTCCGCCCTGGCCTCCCTTGT 1538
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1539 CAGCGCACCCAAAGTGTTCCAGGCTCTGTGCAAGGACAACATCTACAAAGCCCTGCAGTTTTTTGCAAAGGGAT 1612
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1613 ATGGGAAAAACAATGAACCCCTGAGAGGATATATTCTCACTTTTCTTATAGCCATGGCATTTATTCTTATTGCG 1686
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1687 GAACTGAACACCATTGCTCCCATCATCTCCAACTTTTTCCTGGCCTCATATGCACTTATTAATTTCTCCTGCTT 1760
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1761 CCATGCCTCTTATGCCAAATCTCCAGGATGGAGACCTGCGTATGGAATTTACAACATGTGGGTATCTCTTTTTG 1834
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1835 GAGCTGTTTTGTGCTGTGCAGTCATGTTTGTCATCAACTGGTGGGCAGCTGTCATCACCTATGTCATTGAATTC 1908
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1909 TTCCTTTACGTCTATGTGACTTGTAAGAAGCCAGATGTGAACTGGGGCTCCTCCACACAGGCTCTTTCCTACGT 1982
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1983 GAGTGCTTTAGACAATGCTCTGGAATTAACCACAGTGGAAGACCACGTAAAAAACTTCAGGCCCCAGTGCATTG 2056
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2057 TCTTAACAGGGGGACCCATGACAAGACCTGCTCTCCTGGACATAACTCACGCCTTTACCAAGAACAGTGGCCTT 2130
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2131 TGCATCTGCTGTGAAGTCTTTGTGGGACCGCGCAAACTGTGTGTTAAGGAGATGAACAGTGGCATGGCGAAAAA 2204
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2205 ACAGGCCTGGCTTATAAAGAACAAAATCAAGGCTTTTTATGCTGCAGTGGCGGCAGACTGTTTCAGGGATGGTG 2278
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2279 TCCGAAGTCTTCTTCAGGCCTCAGGCTTAGGAAGAATGAAACCAAACACTCTGGTGATTGGATATAAGAAAAAC 2352
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2353 TGGAGGAAAGCTCCCTTGACAGAGATTGAGAACTACGTGGGAATCATACATGATGCATTTGATTTTGAGATTGG 2426
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2427 CGTGGTTATAGTCAGAATCAGCCAAGGATTTGACATCTCTCAGGTTCTTCAGGTGCAAGAGGAATTAGAGAGAT 2500
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2501 TAGAACAGGAGAGACTAGCATTGGAAGCGACTATCAAAGATAATGAGTGTGAAGAGGAAAGTGGAGGCATCCGA 2574
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2575 GGCTTGTTTAAAAAAGCTGGCAAGTTGAACATTACTAAGACAACGCCTAAAAAAGATGGCAGCATTAACACAAG 2648
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2649 CCAGTCGATGCATGTGGGAGAGTTCAACCAGAAACTGGTGGAAGCCAGCACTCAATTTAAAAAGAAACAAGAAA 2722
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2723 AAGGCACAATTGATGTTTGGTGGTTGTTTGATGATGGAGGGTTAACACTTCTTATCCCCTATATCTTAACTCTC 2796
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2797 AGAAAAAAATGGAAAGACTGTAAATTAAGAATCTATGTGGGAGGGAAGATCAACCGCATTGAAGAAGAAAAAAT 2870
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2871 TGTAATGGCTTCCCTTCTGAGCAAATTTAGGATAAAATTTGCAGACATCCATATCATCGGTGACATCAACATTA 2944
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2945 GGCCAAACAAAGAGAGCTGGAAAGTCTTTGAAGAGATGATTGAACCATATCGTCTCCATGAAAGCTGCAAAGAT 3018
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3019 TTAACAACTGCTGAGAAATTAAAAAGAGAAACTCCGTGGAAAATTACAGATGCAGAACTGGAAGCAGTCAAGGA 3092
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3093 AAAGAGTTACCGCCAAGTTCGACTGAATGAACTCTTACAGGAGCACTCCAGAGCTGCTAATCTCATTGTCCTGA 3166
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3167 GCCTTCCCGTGGCAAGAAAGGGATCCATATCGGATTTGTTGTATATGGCTTGGTTGGAAATCCTCACAAAGAAC 3240
Query 1291 --------------------------------------------------------- 1290
Sbjct 3241 CTCCCACCTGTCTTACTAGTTAGAGGAAATCACAAAAATGTCTTGACATTTTACTCT 3297
