Construct: ORF ccsbBroadEn_11139

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002520.1_s300c1, BRDN0000386966
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC12A1 (6557)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6557 SLC12A1 solute carrier family 12 me... NM_000338.3 38.3% 37% (many diffs)
2 human 6557 SLC12A1 solute carrier family 12 me... XM_005254606.2 37.3% 36.3% (many diffs)
3 human 6557 SLC12A1 solute carrier family 12 me... NM_001184832.2 37.1% 36.1% (many diffs)
4 mouse 20495 Slc12a1 solute carrier family 12, m... NM_183354.2 33.8% 34.1% (many diffs)
5 mouse 20495 Slc12a1 solute carrier family 12, m... NM_001079690.1 32.7% 33.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1356
ORF length:
1290
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC ACTGAACAAC TCTTCCAATG TATTTCTGGA TTCAGTGCCC AGTAATACCA
121ATCGCTTTCA AGTTAGTGTC ATAAATGAGA ACCATGAGAG CAGTGCAGCT GCAGATGACA
181ATACTGACCC ACCACATTAT GAAGAAACCT CTTTTGGGGA TGAAGCTCAG AAAAGACTCA
241GAATCAGCTT TAGGCCTGGG AATCAGGAGT GCTATGACAA TTTCCTCCAA AGTGGAGAAA
301CTGCTAAAAC AGATGCCAGT TTTCACGCTT ATGATTCTCA CACAAACACA TACTATCTAC
361AAACTTTTGG CCACAACACC ATGGATGCCG TTCCCAAGAT AGAGTACTAT CGTAACACCG
421GCAGCATCAG TGGGCCCAAG GTCAACCGAC CCAGCCTGCT TGAGATTCAC GAGCAACTCG
481CAAAGAATGT GGCAGTCACC CCAAGTTCAG CTGACAGAGT TGCTAACGGT GATGGGATAC
541CTGGAGATGA ACAAGCTGAA AATAAGGAAG ATGATCAAGC TGGTGTTGTG AAGTTTGGAT
601GGGTGAAAGG TGTGCTGGTA AGATGCATGC TGAACATCTG GGGAGTCATG CTCTTCATTC
661GCCTCTCCTG GATTGTTGGA GAAGCTGGAA TTGGTCTTGG AGTTCTCATA ATTCTTCTTT
721CCACCATGGT AACTTCTATT ACTGGGTTGT CAACTTCTGC GATAGCAACT AACGGGTTTG
781TTCGTGGAGG TGGGGCCTAC TATCTTATTT CCAGAAGTTT AGGGCCCGAG TTCGGTGGGT
841CAATAGGCCT GATCTTTGCT TTTGCTAATG CAGTGGCTGT TGCTATGTAT GTGGTGGGAT
901TTGCTGAGAC TGTAGTAGAT CTTCTTAAGG AGAGTGATTC GATGATGGTG GATCCAACCA
961ATGACATCCG GATTATAGGC TCCATCACAG TGGTGATTCT TCTAGGAATT TCAGTAGCTG
1021GAATGGAATG GGAGGCAAAG GCCCAAGTCA TTCTTCTGGT CATTCTTCTA ATTGCTATTG
1081CAAACTTCTT CATTGGAACT GTCATTCCAT CCAACAATGA GAAAAAGTCC AGAGGTTTCT
1141TTAATTACCA AGCATCAATA TTTGCAGAAA ACTTTGGGCC ACGCTTCACA AAGGGTGAAG
1201GCTTCTTCTC TGTCTTTGCC ATTTTTTTCC CAGCAGCTAC TGGGATTCTT GCTGGTGCCA
1261ATATCTCAGG AGATTTGGAG GCACTGAGGA AACAAGGAGC TTCACCTCTC CCTCAAGGAG
1321CTCAGAGTCG AAGGAGGAGA CAGACTTCCC TTATATGCCC AACTTTCTTG TACAAAGTtg
1381gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)