Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11139
- Subject:
- NM_183354.2
- Aligned Length:
- 3305
- Identities:
- 1120
- Gaps:
- 2035
Alignment
Query 1 ATGTCACTGAACAACTCTTCCAATGTATTTCTGGATTCAGTGCCCAGTAATACCAATCGCTTTCAAGTTAGTGT 74
|||||..|.|.||.|.|||||| |.|||||||||||||.|.|||.|||||||||.||...|||
Sbjct 1 ATGTCGGTCAGCATCCCTTCCA------------ACTCAGTGCCCAGTAGTGCCAGTCGCTTTCAGGTCCATGT 62
Query 75 CATAAATGAGAACCATGAGAGCAGTGCAGCTGCAGAT----GACAATACTGACCCACCACATTATGAAGAAACC 144
.|||||.|||..||||| |||||||.||.||.| | ||||.|.|.|||||.||||||||||||||.|||
Sbjct 63 TATAAACGAGGGCCATG---GCAGTGCGGCAGCCG-TGGGCGACAGTGCAGACCCCCCACATTATGAAGAGACC 132
Query 145 TCTTTTGGGGATGAAGCTCAGAAAAGACTCAGAATCAGCTTTAGGCCTGGGAATCAGGAGTGCTATGACAATTT 218
|||||.|||||.|||||.||.||.|||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 TCTTTCGGGGACGAAGCCCAAAACAGACTGAGAATCAGCTTTAGGCCTGGGAATCAGGAGTGCTATGACAATTT 206
Query 219 CCTCCAAAGTGGAGAAACTGCTAAAACAGATGCCAGTTTTCACGCTTATGATTCTCACACAAACACATACTATC 292
.|||||||.||||||.|||||.||||||||..|||..||||||||.||.||.||||||||||||||||||||.|
Sbjct 207 TCTCCAAACTGGAGAGACTGCCAAAACAGACACCACGTTTCACGCCTACGACTCTCACACAAACACATACTACC 280
Query 293 TACAAACTTTTGGCCACAACACCATGGATGCCGTTCCCAAGATAGAGTACTATCGTAACACCGGCAGCATCAGT 366
|||||||.||||||||||||||||||||.|||||.||||||||.||.|||||.||.|||||.||||||.|.||.
Sbjct 281 TACAAACCTTTGGCCACAACACCATGGACGCCGTCCCCAAGATTGAATACTACCGCAACACAGGCAGCGTGAGC 354
Query 367 GGGCCCAAGGTCAACCGACCCAGCCTGCTTGAGATTCACGAGCAACTCGCAAAGAATGTGGCAGTCACCCCAAG 440
|||||||||||||||||.|||||||||||.|||||.||||||||.||.||.|||||||||.|.||..||||..|
Sbjct 355 GGGCCCAAGGTCAACCGGCCCAGCCTGCTGGAGATCCACGAGCAGCTGGCTAAGAATGTGACTGTGGCCCCTGG 428
Query 441 TTCAGCTGACAGAGTTGCTAACGGTGATGGGATACCTGGAGATGAACAAGCTGAAAATAAGGAAGATGATCAAG 514
||||||||||||.||||||||.||.||||||||.|||||||||||.|||||.|||||.||||||||.|| ||.|
Sbjct 429 TTCAGCTGACAGGGTTGCTAATGGAGATGGGATGCCTGGAGATGAGCAAGCAGAAAACAAGGAAGAAGA-CATG 501
Query 515 -CTGGTGTTGTGAAGTTTGGATGGGTGAAAGGTGTGCTGGTAAGATGCATGCTGAACATCTGGGGAGTCATGCT 587
||||.|||||||||||||||||||||||||||||||||||..|||||||||||||||||||||||||||||||
Sbjct 502 ACTGGAGTTGTGAAGTTTGGATGGGTGAAAGGTGTGCTGGTGCGATGCATGCTGAACATCTGGGGAGTCATGCT 575
Query 588 CTTCATTCGCCTCTCCTGGATTGTTGGAGAAGCTGGAATTGGTCTTGGAGTTCTCATAATTCTTCTTTCCACCA 661
||||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 576 CTTCATTCGCCTCTCCTGGATTGTAGGAGAAGCGGGAATTGGTCTTGGAGTTCTTATAATTCTTCTTTCCACCA 649
Query 662 TGGTAACTTCTATTACTGGGTTGTCAACTTCTGCGATAGCAACTAACGGGTTTGTTCGTGGAGGTGGGGCCTAC 735
|||||||.|||||.||||||||||||||||||||.||||||||.|||||||||||||||||||||||.||||||
Sbjct 650 TGGTAACCTCTATCACTGGGTTGTCAACTTCTGCAATAGCAACAAACGGGTTTGTTCGTGGAGGTGGAGCCTAC 723
Query 736 TATCTTATTTCCAGAAGTTTAGGGCCCGAGTTCGGTGGGTCAATAGGCCTGATCTTTGCTTTTGCTAATGCAGT 809
||.||.||||||.|.||.||||||||.|||||||||||||||||||||.||||||||||||||||.||||||||
Sbjct 724 TACCTGATTTCCCGGAGCTTAGGGCCTGAGTTCGGTGGGTCAATAGGCTTGATCTTTGCTTTTGCCAATGCAGT 797
Query 810 GGCTGTTGCTATGTATGTGGTGGGATTTGCTGAGACTGTAGTAGATCTTCTTAAGGAGAGTGATTCGATGATGG 883
||||||.||||||||||||||||||||.||.||||||||.||.|||||||||||||||||.|||||.|||||||
Sbjct 798 GGCTGTCGCTATGTATGTGGTGGGATTCGCGGAGACTGTCGTGGATCTTCTTAAGGAGAGCGATTCAATGATGG 871
Query 884 TGGATCCAACCAATGACATCCGGATTATAGGCTCCATCACAGTGGTGATTCTTCTAGGAATTTCAGTAGCTGGA 957
||||||||||||||||||||||.||.||.||.||||||||.||||||||||||||||||||.|||||||||||.
Sbjct 872 TGGATCCAACCAATGACATCCGCATCATCGGTTCCATCACCGTGGTGATTCTTCTAGGAATCTCAGTAGCTGGG 945
Query 958 ATGGAATGGGAGGCAAAGGCCCAAGTCATTCTTCTGGTCATTCTTCTAATTGCTATTGCAAACTTCTTCATTGG 1031
|||||.|||||.||||||||.|||||||||||.||||||||||||||.|||||.||||||||||||||||||||
Sbjct 946 ATGGAGTGGGAAGCAAAGGCTCAAGTCATTCTCCTGGTCATTCTTCTCATTGCCATTGCAAACTTCTTCATTGG 1019
Query 1032 AACTGTCATTCCATCCAACAATGAGAAAAAGTCCAGAGGTTTCTTTAATTACCAAGCATCAATATTTGCAGAAA 1105
|||||||||.|||||||||||||||||.||.||||||||.||||||||.|||||||||||.||||||||.||||
Sbjct 1020 AACTGTCATCCCATCCAACAATGAGAAGAAATCCAGAGGCTTCTTTAACTACCAAGCATCTATATTTGCGGAAA 1093
Query 1106 ACTTTGGGCCACGCTTCACAAAGGGTGAAGGCTTCTTCTCTGTCTTTGCCATTTTTTTCCCAGCAGCTACTGGG 1179
|||||||||||.|||||||||||||.||||||||||||||.|||||||||||.|||||||||||.|||||||||
Sbjct 1094 ACTTTGGGCCAAGCTTCACAAAGGGGGAAGGCTTCTTCTCGGTCTTTGCCATCTTTTTCCCAGCTGCTACTGGG 1167
Query 1180 ATTCTTGCTGGTGCCAATATCTCAGGAGATTTGGAGG-----------------CACTGAGGAAACAAG----- 1231
|||||||||||||||||.|||||.|||||..|||||| |.|.||||.|.||.|
Sbjct 1168 ATTCTTGCTGGTGCCAACATCTCTGGAGACCTGGAGGATCCCCAGGACGCCATCCCCAGAGGGACCATGCTGGC 1241
Query 1232 GAGCTTCACCTCTC--------CCT-CA-AGG---------------AGC-----------TCAGAG------- 1262
.|.||||| ||.| ||| || ||| ||| ||.|||
Sbjct 1242 CATCTTCA--TCACCACCGTGGCCTACATAGGTGTTGCTATTTGCGTAGCCGCCTGTGTGGTCCGAGATGCCAC 1313
Query 1263 TCGAAGGAGGA--GACAGACTTCCCTTATA-------------------------------------------- 1290
|.|.||.|.|| |||| .|.||..||.|.
Sbjct 1314 TGGCAGCATGAATGACA-CCATCGTTTCTGGGATGAATTGCAATGGCTCTGCGGCCTGTGGGTTGGGCTACGAC 1386
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1387 TTCTCAAGATGTCAACACGAGCCATGTCAGTATGGGCTGATGAACAATTTCCAGGTCATGAGCATGGTGTCCGG 1460
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1461 GTTCGGGCCCCTCATCACTGCAGGGATCTTTTCGGCAACACTGTCTTCCGCCCTGGCCTCCCTCGTCAGTGCGC 1534
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1535 CCAAAGTATTCCAGGCTCTGTGCAAGGACAACATCTTCAAAGGACTGCAGTTCTTCGCAAAGGGCTATGGGAAA 1608
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1609 AACAACGAGCCCCTGAGAGGGTACTTCCTCACTTTTGTGATAGCCATGGCATTCATTCTCATCGCCGAGCTGAA 1682
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1683 TGTCATTGCCCCCATCATCTCCAACTTCTTCCTGGCCTCATATGCGCTTATTAATTTCTCCTGTTTCCATGCCT 1756
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1757 CGTATGCCAAATCTCCAGGATGGAGGCCTGCATATGGGATTTACAACATGTGGGTATCTCTTTTTGGAGCGATT 1830
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1831 TTGTGCTGTGCAGTCATGTTTGTCATCAACTGGTGGGCAGCTGTCATCACTTATGTCATTGAGTTATTCCTCTA 1904
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1905 TATCTATGTGACTTATAAGAAGCCAGATGTGAACTGGGGCTCCTCCACACAGGCTCTGTCCTATGTGAGTGCTT 1978
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1979 TAGACAACGCTCTGGAATTAACCACAGTGGAAGACCATGTGAAAAACTTCAGACCCCAGTGCATTGTCTTAACA 2052
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2053 GGCGGACCCATGACTAGACCCGCTCTCTTGGATATAACCCACGCCTTTACGAAGAATAGTGGCCTCTGCATCTG 2126
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2127 CTGCGAAGTCTTCGTGGGACCTCGCAAGCTGTGTGTTAAAGAGATGAACAGCGGCATGGCTAAAAAACAGGCCT 2200
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2201 GGCTTATAAAGAACAAAATCAAAGCTTTTTATGCTGCAGTGGCTGCAGACTGCTTCAGGGACGGTGTCCGGAGC 2274
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2275 CTCCTTCAGGCCTCAGGCTTGGGGAGAATGAAGCCAAACACTCTCGTGATTGGATACAAAAAGAACTGGAGGAA 2348
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2349 AGCTCCCTTGTCAGAGCTGGAGAACTACGTGGGAATCATACATGACGCCTTTGACTTTGAGATTGGCGTGGTCA 2422
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2423 TAGTCAGAATCAGCCAAGGCTTTGACATCTCTCCGGTTCTCCAGGTACAAGACGAACTGGAGAAACTGGAACAG 2496
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2497 GAGAGATTGGCTCTGGAGGCCGCAATCAAAGACAACGAGTGTGAGGAGGGCAAGGGGGGCATCCGAGGCTTGTT 2570
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2571 TAAGAAGGCCGGCAAGCTGAACATTACCAAGCCAGCCCCCAAGAAAGACGGCAACATCAGCAGCATCCAGTCAA 2644
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2645 TGCACGTCGGGGAGTTCAATCAGAAACTGGTGGAAGCCAGCGCTCAGTTTAAAAAGAAGCAGGGAAAAGGCACG 2718
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2719 ATTGATGTTTGGTGGTTATTTGATGATGGAGGGTTAACACTGCTTATCCCATATATCTTGACTCTCAGAAAAAA 2792
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2793 ATGGAAAGATTGTAAGTTAAGAATCTATGTTGGAGGAAAGATCAACCGCATCGAAGAGGAAAAAATTTCAATGG 2866
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2867 CTTCACTTCTCAGCAAATTTAGAATAAAATTTGCAGACATCCATATAATTGGAGACATCAACATTAAGCCAAAC 2940
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2941 AAAGAGAGCTGGAAAGTCTTTGAAGAGATGATTGAACCTTATCGGCTTCATGAAAGCCACAAAGATTTGACCAC 3014
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3015 TGCTGAGAAATTAAAAAGAGAAAGTCCATGGAAAATTACAGATGCAGAACTGGAAGCAGTCAAGGAAAAGAGTT 3088
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3089 ACCGTCAAGTTCGACTGAACGAGCTCTTACAGGAACACTCCAGAGCCGCCAACCTCATCGTGTTGAGCCTTCCA 3162
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3163 GTGGCAAGAAAAGGATCTATTTCGGATTTGTTGTACATGGCGTGGTTAGAAATCCTGACCAAGAACCTTCCTCC 3236
Query 1291 ------------------------------------------------- 1290
Sbjct 3237 TGTGTTACTGGTTAGAGGAAATCACAAAAATGTCTTAACATTTTACTCT 3285
