Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11149
- Subject:
- XM_011520842.2
- Aligned Length:
- 1963
- Identities:
- 1130
- Gaps:
- 755
Alignment
Query 1 ATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACGCAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCAC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 AATACAATGGAAGTTGATGGCAATAAAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAA 296
|..||..||.||| |||.|
Sbjct 1 ----------------------------------------------------ATGCAGGTATCTC----CAGGA 18
Query 297 GGCAGAAGAAGGTG---GGCGA-----CAGAGTGGCGAGTCCTTGTCTAGTACAGCCCTGGGAACTCCTGAACG 362
|| ||||.|| ||| | || .|||.| ||||| ||.|.|| .|.|.||||| ||
Sbjct 19 GG-----GAAGCTGCCAGGC-ATACCCCA---AGGCAA--CCTTG----GTGCTGC---TGTATCTCCT--AC- 71
Query 363 GCGCAAGGGCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGC 436
|| ||| ||.||| |||| .||||| ||.|||| |||
Sbjct 72 ---CA---GCA---------------TTCACA--------CAGA--------CAAGAG-----CACAAAC-AGC 102
Query 437 CGGAAGAAACC-CCCAGTATTGAAAAACTACTCTCAAAGGACTGGAAAGACA-AGCTTCTTGCAATGGGATCGG 508
| .||| ||| ||||.| ||||| ||.|..|.|| |||..||
Sbjct 103 C------CACCACCC-------AAAAGC--------AAGGA-TGAAGTGGCACAGCCACT-------------- 140
Query 509 GGAAC--TTTGGCGAAATAAAAGGGACTCCCGAGAGCTTAGCTGAGAAAGAAAGGCAACTCATGGGTATGATCA 580
|||| .|..||.||| |||.|||.|| ||| |.||||| ||||
Sbjct 141 -GAACCTATCAGCTAAA-----------CCCAAGACCT---CTG-------ATGGCAA------------ATCA 180
Query 581 ACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGCCCACGATGAGCAGAAGAAACTAGCTGC---CTCTCAG 651
.|||..|.|||..||| ||.|||| || ||| ||||.||
Sbjct 181 CCCACATCACCCACCT-----------------CTCCCCA-----------------TA--TGCCAGCTCTGAG 218
Query 652 ATTGAGAAACAGCGTCAGCAAATGGAGCTGGCC------AAGCAGCAACAAGAACAAATTG--CAAGACAGCAG 717
| |.|||||| |||.||.|||| ||||..| || | ||||||
Sbjct 219 A---ATAAACAG----------TGGGGCAGGCCCCCTCAAAGCCTC-------------TGTCC----CAGCAG 262
Query 718 CAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAGATCCAGGTT--CA----AGGTCAGCT 785
|...|||| || |.||.|||| |||| ||| || ||||.|
Sbjct 263 CGTTAGCT-----AG-------------------TCCTTCAGC--CAGA-----GTTAGCACAATAGGTTA--- 302
Query 786 GCCGCCATTAATGATTCCCGTATTCCCTCC-TGATCAACGGACACTGGCTGCAGCTGCCCAGCAAGGATTCCTC 858
|.|.||||| || |||| |||| .||.|||||
Sbjct 303 -----CTTAAATGA--------------CCATGAT------------GCTG-------TCACCAAGG------- 331
Query 859 CTCCCTCCAGGCTTCAGCTATAAGGCTGG----ATGTAGTGACCCTTACCCTGTTCAGCTGATCCCAACTACCA 928
|..||||.| |.|||.| |||.|| || .|||||
Sbjct 332 --CAATCCAAG-----------AAGCTCGGCAAATGAAG-GA----------------------GCAACT---- 365
Query 929 TGGCAGCTGCTGCCG-CAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATATGCTGCCCAGCTAGC 1001
||| |.|.||||.|||| ||||
Sbjct 366 ------------CCGACGGGAACAACAGG------------------------------TGCT----------- 386
Query 1002 TGCAATGCAGGTATCTCCAGGAGGGAAGCTGCCAGGCATACCCCAAGGCAACCTTGGTGCTGCTGTATCTCCTA 1075
|| || ||||||.|| ||||.|||
Sbjct 387 TG--AT----------------GGGAAGGTG---------------------------GCTGTTGT-------- 407
Query 1076 CCAGCATTCACACAGACAAGAGCACA--AACAGCCCACCACCCAAAAGCAAGGAAAAAACAACACTGGAGAGTC 1147
|.|| ||.|..|..|.|| |||.|||.| ||..|| |||||||||||||||||||||||||
Sbjct 408 ---GAAT------AGTCTGGGTCTCAATAACTGCCGA--ACAGAA----AAGGAAAAAACAACACTGGAGAGTC 466
Query 1148 TGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGT 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGT 540
Query 1222 GGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGA 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGA 614
Query 1296 ACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCT 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 ACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCT 688
Query 1370 TTCCTGACATGCACAACTCCAACATCAGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAA 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 TTCCTGACATGCACAACTCCAACATCAGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAA 762
Query 1444 CAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCC 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCC 836
Query 1518 CAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACA 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACA 910
Query 1592 GGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTG 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTG 984
Query 1666 TACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAG 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAG 1058
Query 1740 CCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGA 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 CCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGA 1132
Query 1814 TACAGGCCGAGGACATCAATGGAGAAATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGTAGATTAT 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TACAGGCCGAGGACATCAATGGAGAAATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGTAGATTAT 1206
Query 1888 GGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAAC 1926
|||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAAC 1245
