Construct: ORF ccsbBroadEn_11149

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014009.1_s300c1, BRDN0000393892
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SOX5 (6660)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6660 SOX5 SRY-box transcription factor 5 NM_001261414.3 100% 100%
2 human 6660 SOX5 SRY-box transcription factor 5 NM_152989.5 85.6% 85.6% 1123_1446del
3 human 6660 SOX5 SRY-box transcription factor 5 XM_017019896.1 85.6% 85.6% 1123_1446del
4 human 6660 SOX5 SRY-box transcription factor 5 XM_024449160.1 85.6% 85.6% 1123_1446del
5 human 6660 SOX5 SRY-box transcription factor 5 XM_024449161.1 85.6% 85.6% 1123_1446del
6 human 6660 SOX5 SRY-box transcription factor 5 XM_011520834.2 85.4% 85.4% 769_771delCAG;1126_1449del
7 human 6660 SOX5 SRY-box transcription factor 5 XM_011520835.2 85.4% 85.4% 769_771delCAG;1126_1449del
8 human 6660 SOX5 SRY-box transcription factor 5 XM_011520837.2 85.4% 85.4% 769_771delCAG;1126_1449del
9 human 6660 SOX5 SRY-box transcription factor 5 XM_017019890.1 85.4% 85.4% 769_771delCAG;1126_1449del
10 human 6660 SOX5 SRY-box transcription factor 5 XM_017019891.1 85.4% 85.4% 769_771delCAG;1126_1449del
11 human 6660 SOX5 SRY-box transcription factor 5 XM_017019892.1 85.4% 85.4% 769_771delCAG;1126_1449del
12 human 6660 SOX5 SRY-box transcription factor 5 XM_017019893.1 85.4% 85.4% 769_771delCAG;1126_1449del
13 human 6660 SOX5 SRY-box transcription factor 5 XM_017019894.1 85.4% 85.4% 769_771delCAG;1126_1449del
14 human 6660 SOX5 SRY-box transcription factor 5 XM_017019895.1 85.4% 85.4% 769_771delCAG;1126_1449del
15 human 6660 SOX5 SRY-box transcription factor 5 XM_024449150.1 85.4% 85.4% 769_771delCAG;1126_1449del
16 human 6660 SOX5 SRY-box transcription factor 5 XM_024449151.1 85.4% 85.4% 769_771delCAG;1126_1449del
17 human 6660 SOX5 SRY-box transcription factor 5 XM_024449152.1 85.4% 85.4% 769_771delCAG;1126_1449del
18 human 6660 SOX5 SRY-box transcription factor 5 XM_024449153.1 85.4% 85.4% 769_771delCAG;1126_1449del
19 human 6660 SOX5 SRY-box transcription factor 5 XM_024449154.1 85.4% 85.4% 769_771delCAG;1126_1449del
20 human 6660 SOX5 SRY-box transcription factor 5 XM_024449155.1 85.4% 85.4% 769_771delCAG;1126_1449del
21 human 6660 SOX5 SRY-box transcription factor 5 XM_024449157.1 85.4% 85.4% 769_771delCAG;1126_1449del
22 human 6660 SOX5 SRY-box transcription factor 5 XM_024449158.1 85.4% 85.4% 769_771delCAG;1126_1449del
23 human 6660 SOX5 SRY-box transcription factor 5 XM_024449159.1 85.4% 85.4% 769_771delCAG;1126_1449del
24 human 6660 SOX5 SRY-box transcription factor 5 NM_001261415.2 85.2% 85.2% 1_9delATGTCTGTG;1132_1455del
25 human 6660 SOX5 SRY-box transcription factor 5 XM_011520833.2 85.1% 85.1% 1_9delATGTCTGTG;778_780delCAG;1135_1458del
26 human 6660 SOX5 SRY-box transcription factor 5 NM_006940.6 84.1% 84.1% 1_39del;1162_1485del
27 human 6660 SOX5 SRY-box transcription factor 5 XM_011520832.2 84% 84% 1_39del;808_810delCAG;1165_1488del
28 human 6660 SOX5 SRY-box transcription factor 5 XM_017019898.1 80.9% 80.9% 126_127ins105;1018_1341del
29 human 6660 SOX5 SRY-box transcription factor 5 XM_017019899.1 80.9% 80.9% 126_127ins105;1018_1341del
30 human 6660 SOX5 SRY-box transcription factor 5 XM_017019900.1 80.9% 80.9% 126_127ins105;1018_1341del
31 human 6660 SOX5 SRY-box transcription factor 5 XM_017019901.1 80.9% 80.9% 126_127ins105;1018_1341del
32 human 6660 SOX5 SRY-box transcription factor 5 XM_017019897.1 80.8% 80.8% 126_127ins105;664_666delCAG;1021_1344del
33 human 6660 SOX5 SRY-box transcription factor 5 XM_024449163.1 80.8% 80.8% 126_127ins105;664_666delCAG;1021_1344del
34 human 6660 SOX5 SRY-box transcription factor 5 XM_024449164.1 80.8% 80.8% 126_127ins105;664_666delCAG;1021_1344del
35 human 6660 SOX5 SRY-box transcription factor 5 XM_024449165.1 80.8% 80.8% 126_127ins105;664_666delCAG;1021_1344del
36 human 6660 SOX5 SRY-box transcription factor 5 NM_001330785.2 79.5% 79.5% 1_39del;165_166ins105;1057_1380del
37 human 6660 SOX5 SRY-box transcription factor 5 XM_011520838.2 79.4% 79.4% (many diffs)
38 human 6660 SOX5 SRY-box transcription factor 5 XM_017019889.1 73.3% 73.3% 1_231del;357_358ins105;1249_1572del
39 human 6660 SOX5 SRY-box transcription factor 5 XM_017019888.1 73.3% 73.3% (many diffs)
40 human 6660 SOX5 SRY-box transcription factor 5 XM_011520842.2 57.5% 40.9% (many diffs)
41 human 6660 SOX5 SRY-box transcription factor 5 XM_017019903.1 57.5% 57.2% (many diffs)
42 human 6660 SOX5 SRY-box transcription factor 5 XM_017019902.1 57.4% 57.1% (many diffs)
43 human 6660 SOX5 SRY-box transcription factor 5 NM_178010.4 52.1% 41.6% (many diffs)
44 mouse 20678 Sox5 SRY (sex determining region... XM_011241582.1 81.2% 83.8% (many diffs)
45 mouse 20678 Sox5 SRY (sex determining region... NM_001113559.2 79.6% 82.2% (many diffs)
46 mouse 20678 Sox5 SRY (sex determining region... XM_006506936.3 77.3% 82.9% (many diffs)
47 mouse 20678 Sox5 SRY (sex determining region... XM_006506937.3 77.3% 82.9% (many diffs)
48 mouse 20678 Sox5 SRY (sex determining region... XM_011241577.1 77.3% 82.9% (many diffs)
49 mouse 20678 Sox5 SRY (sex determining region... XM_011241578.1 77.3% 82.9% (many diffs)
50 mouse 20678 Sox5 SRY (sex determining region... XM_011241579.1 77.3% 82.9% (many diffs)
51 mouse 20678 Sox5 SRY (sex determining region... XM_006506938.3 76.6% 79.1% (many diffs)
52 mouse 20678 Sox5 SRY (sex determining region... XM_017321476.1 76.6% 79.1% (many diffs)
53 mouse 20678 Sox5 SRY (sex determining region... NM_011444.3 76.1% 81.6% (many diffs)
54 mouse 20678 Sox5 SRY (sex determining region... XM_006506933.3 76% 81.5% (many diffs)
55 mouse 20678 Sox5 SRY (sex determining region... NM_001243163.1 75.2% 77.7% (many diffs)
56 mouse 20678 Sox5 SRY (sex determining region... XM_017321475.1 75.1% 77.6% (many diffs)
57 mouse 20678 Sox5 SRY (sex determining region... XM_006506932.3 73.4% 78.7% (many diffs)
58 mouse 20678 Sox5 SRY (sex determining region... XM_006506931.3 73.3% 78.6% (many diffs)
59 mouse 20678 Sox5 SRY (sex determining region... XM_006506941.3 73.1% 78.6% (many diffs)
60 mouse 20678 Sox5 SRY (sex determining region... XM_017321474.1 73.1% 78.6% (many diffs)
61 mouse 20678 Sox5 SRY (sex determining region... XM_006506940.3 73% 78.5% (many diffs)
62 mouse 20678 Sox5 SRY (sex determining region... XM_011241581.1 73% 78.5% (many diffs)
63 mouse 20678 Sox5 SRY (sex determining region... XM_006506942.3 72.4% 74.7% (many diffs)
64 mouse 20678 Sox5 SRY (sex determining region... XM_011241580.2 71.8% 77.3% (many diffs)
65 mouse 20678 Sox5 SRY (sex determining region... XM_006506939.3 71.7% 77.2% (many diffs)
66 mouse 20678 Sox5 SRY (sex determining region... XM_006506935.3 69.3% 74.5% (many diffs)
67 mouse 20678 Sox5 SRY (sex determining region... XM_006506934.3 69.2% 74.4% (many diffs)
68 mouse 20678 Sox5 SRY (sex determining region... NM_001347506.1 47.2% 41.2% (many diffs)
69 mouse 20678 Sox5 SRY (sex determining region... XM_006506944.3 43.3% 45.2% (many diffs)
70 mouse 20678 Sox5 SRY (sex determining region... XM_017321477.1 43.3% 45.2% (many diffs)
71 mouse 20678 Sox5 SRY (sex determining region... XM_006506945.3 40.1% 43.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1992
ORF length:
1926
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC TTCCAAGCGA CCAGCCTCTC CGTATGGGGA AGCAGATGGA GAGGTAGCCA
121TGGTGACAAG CAGACAGAAA GTGGAAGAAG AGGAGAGTGA CGGGCTCCCA GCCTTTCACC
181TTCCCTTGCA TGTGAGTTTT CCCAACAAGC CTCACTCTGA GGAATTTCAG CCAGTTTCTC
241TGCTGACGCA AGAGACTTGT GGCCATAGGA CTCCCACTTC TCAGCACAAT ACAATGGAAG
301TTGATGGCAA TAAAGTTATG TCTTCATTTG CCCCACACAA CTCATCTACC TCACCTCAGA
361AGGCAGAAGA AGGTGGGCGA CAGAGTGGCG AGTCCTTGTC TAGTACAGCC CTGGGAACTC
421CTGAACGGCG CAAGGGCAGT TTAGCTGATG TTGTTGACAC CTTGAAGCAG AGGAAAATGG
481AAGAGCTCAT CAAAAACGAG CCGGAAGAAA CCCCCAGTAT TGAAAAACTA CTCTCAAAGG
541ACTGGAAAGA CAAGCTTCTT GCAATGGGAT CGGGGAACTT TGGCGAAATA AAAGGGACTC
601CCGAGAGCTT AGCTGAGAAA GAAAGGCAAC TCATGGGTAT GATCAACCAG CTGACCAGCC
661TCCGAGAGCA GCTGTTGGCT GCCCACGATG AGCAGAAGAA ACTAGCTGCC TCTCAGATTG
721AGAAACAGCG TCAGCAAATG GAGCTGGCCA AGCAGCAACA AGAACAAATT GCAAGACAGC
781AGCAGCAGCT TCTACAGCAA CAACACAAAA TCAATTTGCT CCAGCAACAG ATCCAGGTTC
841AAGGTCAGCT GCCGCCATTA ATGATTCCCG TATTCCCTCC TGATCAACGG ACACTGGCTG
901CAGCTGCCCA GCAAGGATTC CTCCTCCCTC CAGGCTTCAG CTATAAGGCT GGATGTAGTG
961ACCCTTACCC TGTTCAGCTG ATCCCAACTA CCATGGCAGC TGCTGCCGCA GCAACACCAG
1021GCTTAGGCCC ACTCCAACTG CAGCAGTTAT ATGCTGCCCA GCTAGCTGCA ATGCAGGTAT
1081CTCCAGGAGG GAAGCTGCCA GGCATACCCC AAGGCAACCT TGGTGCTGCT GTATCTCCTA
1141CCAGCATTCA CACAGACAAG AGCACAAACA GCCCACCACC CAAAAGCAAG GAAAAAACAA
1201CACTGGAGAG TCTGACTCAG CAACTGGCAG TTAAACAGAA TGAAGAAGGA AAATTTAGCC
1261ATGCAATGAT GGATTTCAAT CTGAGTGGAG ATTCTGATGG AAGTGCTGGA GTCTCAGAGT
1321CAAGAATTTA TAGGGAATCC CGAGGGCGTG GTAGCAATGA ACCCCACATA AAGCGTCCAA
1381TGAATGCCTT CATGGTGTGG GCTAAAGATG AACGGAGAAA GATCCTTCAA GCCTTTCCTG
1441ACATGCACAA CTCCAACATC AGCAAGATAT TGGGATCTCG CTGGAAAGCT ATGACAAACC
1501TAGAGAAACA GCCATATTAT GAGGAGCAAG CCCGTCTCAG CAAGCAGCAC CTGGAGAAGT
1561ACCCTGACTA TAAGTACAAG CCCAGGCCAA AGCGCACCTG CCTGGTGGAT GGCAAAAAGC
1621TGCGCATTGG TGAATACAAG GCAATCATGC GCAACAGGCG GCAGGAAATG CGGCAGTACT
1681TCAATGTTGG GCAACAAGCA CAGATCCCCA TTGCCACTGC TGGTGTTGTG TACCCTGGAG
1741CCATCGCCAT GGCTGGGATG CCCTCCCCTC ACCTGCCCTC GGAGCACTCA AGCGTGTCTA
1801GCAGCCCAGA GCCTGGGATG CCTGTTATCC AGAGCACTTA CGGTGTGAAA GGAGAGGAGC
1861CACATATCAA AGAAGAGATA CAGGCCGAGG ACATCAATGG AGAAATTTAT GATGAGTACG
1921ACGAGGAAGA GGATGATCCA GATGTAGATT ATGGGAGTGA CAGTGAAAAC CATATTGCAG
1981GACAAGCCAA CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2041caatttgttg caacgaac

Download FASTA (ORF) (Full)