Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11159
- Subject:
- XR_001738907.2
- Aligned Length:
- 5696
- Identities:
- 735
- Gaps:
- 4961
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCTCCGGGCGCGTCAGGCAGGGGGTGGGGAGCAGGGGCCGGGCGGGCGCTCGGCTCCCAGCCGCGCTCCCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGCCACTAGCGCTCCCGCGCGCGCCCGGCCGCCTTCATGTGAAGCGCCGGCCCTCCGCCCCTTCCCTCCCCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTTCCCTCCCTCCCTCCCTGTCCCCTCCTCCTCCTCCTCCTCCTCCGGCGCCCGCTTCAGCTCCCCGGGGCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTGCCCGGCCGGGCGCTGACAGCAAGGGCGGGGGTCCCTGCCGCCGCCTTGTCTCGCGCAGGGTCCGGCTGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTAGCGGAGCCCCCAGTGCGGCCATGGACCGGCCCCTGTCGTCGTCGGCGGAGGCGGAGGAGGAACTGGAGTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAAGTGGCGAGTCGCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCCTGGCAAGCGTCGGAGACGGAGGATCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTCCACAGAAGCGACGACGCAGGACGAGGAGGAGGACGAGGAGGAGGACCTCCCCGGCGCGCAGCTGCCGGCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGGGGGGAAGAGGAAACGTGCCCAACGAGAAGATCGCGATATGGCTCAAGGACTGCCGTACACCTTTGGGAGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCACTGGATGAACAAAGCAGTAGTACACTCAAGGGTGTGCTTGTGAGAAATGGAGGAAGTTTTGAAGATGATTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTCATTGGGAGCTGAAGCCAACCACCTCCATGAAAGTGATGCTCAAATTGAAAACTGCAATAATATCTTGGCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGAGAGAAGATTACAGTTTCATCAGAAAGGGAGAAGTATGAATTCCACTGGATCTGGGAAAAGTAGTGGGACA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTTTCAAGTGTTTCAGAATTGTTGGAACTTTATGAGGAAGATCCTGAAGAAATTCTTTATAATCTTGGATTTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACGTGATGAACCAGATATTGCTTCTAAAATTCCTTCCAGATTTTTTAATTCATCATCCTTTGCCAAAGGGATAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATATTAAAGTATTTTTGAGTGCTCAGATGCAACGGATGGAAGTAGAAAACCCAAATTATGCTTTAACAAGCCGT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTCGTCAAATTGAAGTGCTTACTACTGTGGCCAATGCGTTTTCTTCTTTATATTCTCAAGTCTCCGGGACGCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTGCAGAGAATTGGAAGTATGTCCTCAGTGACCTCTAACAAGGAGACAGACCCACCTCCACCTTTAACTCGAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTAACACTGCAAATCGTTTAATGAAAACACTCTCAAAACTGAATTTATGTGTTGATAAAACAGAGAAAGGAGAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGTAGTAGTCCTTCTCCATCAGCTGAAAAAGGAAAGATTCTAAATGTTTCAGTGATTGAAGAAAGTGGCAATAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAACGATCAAAAGTCTCAAAAAATTATGAAGAAGAAAGAGTCATCTTCTATGTTGGCTACAGTTAAAGAAGAAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTCTGGTAGTTCAGCAGCTGTTACGGAGAATGCTGATAGTGATAGAATTTCTGATGAAGCAAATAGTAATTTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AACCAAGGAACTGAAAATGAACAAAGTAAAGAAACTCAAAGTCATGAGAGTAAACTGGGTGAGGAATCTGGTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGTAGAATCCAAATTAGATAGTGATTTCAACATATCCAGCCACAGTGAGCTGGAAAATAGCAGTGAGCTGAAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTGTCCATATATCCACACCTGAAAAAGAGCCTTGTGCACCACTGACAATACCATCCATAAGAAATATAATGACA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGCAGAAGGACTCCTTCGAAATGGAAGAGGTTCAAAGTACGGAGGGAGAAGCTCCTCATGTTCCAGCCACTTA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCAGCTAGGTCTTACGAAGTCGAAAAGAGATCATCTGTTACGTACTGCAAGTCAGCATTCCGATAGCAGTGGTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTGCTGAAGATTCTACAGACTGCCTATCCCTTAATCATCTTCAGGTTCAGGAGTCCTTGCAGGCTATGGGGAGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGTGCTGATAGTTGTGACAGTGAGACAACAGTTACGTCACTTGGTGAAGACCTTGCCACACCAACAGCACAAGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCAGCCTTATTTTAATGAATCAGAGGAGGAGTCTCTTGTCCCTCTTCAGAAGGGACTAGAGAAGGCAGCAGCAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTGCAGACAAAAGAAAATCAGGTAGCCAGGATTTCCCTCAGTGCAACACCATTGAGAATACAGGAACTAAACAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCCACCTGTAGTCCAGGGGATCATATCATTGAAATTACTGAAGTGGAAGAGGATTTGTTTCCAGCAGAGACAGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGAGCTACTGAGGGAAGCAAGTGCTGAAAGTGATGTGGGTAAAAGCAGTGAAAGTGAATTTACTCAGTATACCA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CACACCATATTCTGAAATCATTGGCTTCTATTGAAGCTAAATGCAGTGATATGAGCTCTGAAAATACAACTGGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCTCCCTCTTCCATGGACAGAGTTAATACAGCTTTGCAAAGAGCTCAAATGAAGGTTTGCAGTCTGTCTAATCA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAGGATGGGGCGTAGCCTGCTAAAATCAAAAGATTTGTTAAAACAAAGGTACTTATTTGCAAAAGCTGGCTATC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CTCTAAGAAGGTCTCAGTCTTTACCAACCACCTTATTGAGCCCAGTAAGGGTTGTGTCCTCTGTCAATGTTCGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TTATCTCCAGGAAAAGAGACCAGATGCAGCCCACCTTCCTTCACCTATAAGTACACACCTGAAGAGGAGCAGGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATTGGAAAAGCGGGTGATGGAACATGATGGTCAGTCTTTAGTTAAATCGACCATTTTCATCTCTCCATCATCTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGAAGAAAGAAGAAGCCCCCCAGAGTGAGGCGCCGCGGGTGGAGGAATGCCATCATGGAAGGACTCCTACCTGT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TCACGGCTTGCTCCACCACCAATGTCTCAGTCTACCTGTTCCCTTCATTCCATCCACTCTGAGTGGCAAGAAAG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCCCCTGTGTGAGCACACAAGAACTCTGAGCACTCACAGTGTTCCCAACATATCAGGGGCTACTTGTAGTGCCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TCGCTTCCCCTTTCGGGTGTCCTTACTCACATAGACATGCCACCTACCCTTACCGAGTGTGCTCTGTGAATCCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCTTCAGCCATAGAAATGCAGTTGCGAAGAGTATTACATGATATTAGAAACTCACTGCAGAATCTTTCACAGGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGAAGCTGTAACTAACCCTGATCAAAGTCGATTTCTCTGCTCACAAGTCTGTCTCCTTTCCAAGAGGAGAGATT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTTCTCGTTAAGTATCCTCCCATTTTTAGTCTATCATCCACTGTCTTTGTTTTAGTCTAGAATCTTTTGTCATT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCTATTATTAAAAAATCTTCCCTCTTAAAGTTCTTTCTCTCTTTCTCTCTGCTATTTGAACATGTTGACTACCT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTCCTTTTCCAAGTTTTCTCCCTGTTGGCTTCTGTGGCACCACGTTCTCCTGGTTCTGCTCGTAGCTCTCTGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTAAGCTTTCCCCTTCACCTACTGACCCTCGATGCTGTGCACAGAGTTAGTCTACTTCCACTGGACTCAAAGAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TGGAACTACTCCAGACCAGAAAATAACAAATCAGTACCCTATGATGAGAGGACCTGATCCTGCTGCTGCTCCAT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATAGTACTCAGAAATCATCTGTTCTACCTCTTTATGAAAATACTTTTCAGGAGCTCCAGGTAATGAGGCGGAGC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CTGAATTTGTTTAGAACACAAATGATGGATTTAGAATTGGCAATGCTGCGTCAGCAAACCATGGTTTATCATCA 3700
Query 1 -ATGACTGAGGAGGAGAGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGTCCGAATGGAACTTCAGG 73
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 TATGACTGAGGAGGAGAGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGTCCGAATGGAACTTCAGG 3774
Query 74 ACCTGGAACTGCAGCTGGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATGCCTTCACCC 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 ACCTGGAACTGCAGCTGGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATGCCTTCACCC 3848
Query 148 TTCCGCTCCTCCGCACTCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCATGCCCTTCTCCATTGAA 221
|||||||||||||||||||||
Sbjct 3849 TTCCGCTCCTCCGCACTCATG----------------------------------------------------- 3869
Query 222 TGTAATGGAACCAGTCACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATTGGGCCTGGGACTTGGAG 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3870 -------------GTCACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATTGGGCCTGGGACTTGGAG 3930
Query 296 AAATGGGATTTGAAATTCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAACATCAGAATCATCTTCT 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3931 AAATGGGATTTGAAATTCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAACATCAGAATCATCTTCT 4004
Query 370 GTATGTTCTGGTCCCTCTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCAGTGGGCAAATCCAAAAC 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4005 GTATGTTCTGGTCCCTCTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCAGTGGGCAAATCCAAAAC 4078
Query 444 CCCATTAGTGGCAAGGAAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4079 CCCATTAGTGGCAAGGAAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCT 4152
Query 518 CTGTGCAGACACCTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAGCCCCAGAAGTTGTAGGA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4153 CTGTGCAGACACCTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAGCCCCAGAAGTTGTAGGA 4226
Query 592 CCTAAATCTGAAGTGGAAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAGGAAATGCATAAAAATGT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4227 CCTAAATCTGAAGTGGAAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAGGAAATGCATAAAAATGT 4300
Query 666 GGAGCAAGATGAGTTGCAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGAAATCAGACGGGAAATTG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4301 GGAGCAAGATGAGTTGCAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGAAATCAGACGGGAAATTG 4374
Query 740 TAAGTGGACTTTTGGCAGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATTATCAT------------ 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4375 TAAGTGGACTTTTGGCAGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATTATCATTAAACAGAAATT 4448
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4449 ATAGGTTGGCATGGATCCTATTAGCTGTGTAATACTGGAATTATCAATGATATGCACTGGTGGAGGTGTTATTT 4522
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4523 GTGCTTTAGAAGATACTTGCTGTTGAGCTGGGCTACTGTATACAGTGTACAATGTGTATTTCTTCAACCATATA 4596
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4597 TTTTAAAAAGACGTACATAGAAACTTAGGCACTTTGCTATTTCTTTTCTAAACTATCAAAAACTCTAGCAGTTT 4670
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4671 GAAAAGCCTAATATTTATTTGTATGTCAGTATTTTTCATTTGATTCCCTATTAGAATTAATTTTAAAACTTGAA 4744
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4745 GACTTCCAGACTTATCCAACTTATAAATAACATATTTCTTCAGACTAACATCTTAAAACACTGACCTCTATGAG 4818
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4819 GTATTTACTGTGCAATAACTGATTCATTTTTTTCAGAGCTTGAAGCATCCAATGATTTTTCCCTCCACTGCTGT 4892
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4893 TAATTAATGTCACTTCCAAGAAGAAAAACTGTTCTGTTGTAAAAAATATAATTGCTCTTAATTCTTGGGGAGGT 4966
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4967 TACTAATAGCAGTAGGATAGAATTTTATGAGGTTACCTACAACTACTTAATGTACTTACACTGTAAGCCTTGTT 5040
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5041 GCTTTACCCAAGACAAATGTAATTTTATCATTGCTTATGTAGTATTTTTCTTTTGGAAATGTGCCTTATGTTAA 5114
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5115 ACACTATGTACTTTTACTTTTTGCATTGTCCAGACTTCTTTATTAGATGGAGATGTTTCTTTTTCTGTCTTCTA 5188
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5189 GACTAAATAGAGTATCATCCAAATAATGGGGCCTATGACTTGAATGAATAGAAATGAATAAGCTGGTGTTTGTT 5262
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5263 TTTTCAAAATGGAAGTAATTTAGATTTGTTCTCCTCATACATAAAATGATTTTAGTTCAGTTTTAACCAGTGAA 5336
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5337 AACTTTGTTTTTATGAAAAAAAAGGAAAATGGTTTCCCATTTGGTTTTATATGTGTTAAATAAATGTGTAAAGT 5410
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5411 AACCACCAAATGTTATTAGAATTTTTCTTCTAGCATTTATAATTTTTTCAACTCCTATTGTGTTTCTTTGTGTG 5484
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5485 TGATATTTTAATCAAAAGTGGTTGAGTTGTTAACAGTGTTCTTTGAAAGAATCTCTAAAAGGCTTATAAATGTT 5558
Query 802 ------------------------------------------------------------------------ 801
Sbjct 5559 TGAAATATCACACAAAGGCTGATTTCTAAAATATATATATATTAAAACAATAAAGTATTTATTTTGCCTAAA 5630
