Construct: ORF ccsbBroadEn_11159

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016628.1_s300c1, BRDN0000392208
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ITPRID2 (6744)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6744 ITPRID2 ITPR interacting domain con... XM_011511702.3 34.7% 34.7% 1_1503del
2 human 6744 ITPRID2 ITPR interacting domain con... NM_001287504.2 22.1% 22.1% 1_2517del;2685_2686ins66
3 human 6744 ITPRID2 ITPR interacting domain con... NM_001130445.3 21.2% 21.2% 1_2976del
4 human 6744 ITPRID2 ITPR interacting domain con... XM_005246812.2 20.8% 20.8% 1_2976del;3198_3199insGTAATGGAACCA
5 human 6744 ITPRID2 ITPR interacting domain con... NM_006751.7 19.7% 18.6% (many diffs)
6 human 6744 ITPRID2 ITPR interacting domain con... NM_001287503.2 19.4% 19.4% 1_2976del;3144_3145ins66
7 human 6744 ITPRID2 ITPR interacting domain con... XM_005246813.2 19.4% 18.3% (many diffs)
8 human 6744 ITPRID2 ITPR interacting domain con... XM_017004782.2 18% 16.9% (many diffs)
9 human 6744 ITPRID2 ITPR interacting domain con... XR_002959326.1 16.1% 1_3173del;3975_4958del
10 human 6744 ITPRID2 ITPR interacting domain con... XR_001738910.2 15.2% 1_3463del;4265_5248del
11 human 6744 ITPRID2 ITPR interacting domain con... XR_001738905.2 15.1% 1_3496del;4298_5281del
12 human 6744 ITPRID2 ITPR interacting domain con... XR_001738912.2 14.4% 1_3463del;3685_3686insGTAATGGAACCA;4253_5446del
13 human 6744 ITPRID2 ITPR interacting domain con... XR_001738911.2 14.2% 1_3611del;4413_5606del
14 human 6744 ITPRID2 ITPR interacting domain con... XR_001738908.2 13.8% (many diffs)
15 human 6744 ITPRID2 ITPR interacting domain con... XR_001738906.2 13.8% 1_3701del;3923_3924insGTAATGGAACCA;4491_5684del
16 human 6744 ITPRID2 ITPR interacting domain con... XR_001738913.2 13.7% (many diffs)
17 human 6744 ITPRID2 ITPR interacting domain con... NR_109843.2 13.6% 1_3891del;4693_5886del
18 human 6744 ITPRID2 ITPR interacting domain con... XR_001738907.2 12.9% 1_3701del;3869_3870ins66;4437_5630del
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
867
ORF length:
801
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC TGAGGAGGAG AGGTTTGAAG TTGATCAGCT CCAGGGTTTG AGAAATTCAG
121TCCGAATGGA ACTTCAGGAC CTGGAACTGC AGCTGGAGGA GCGCCTGCTG GGCCTGGAGG
181AGCAGCTTCG TGCTGTGCGC ATGCCTTCAC CCTTCCGCTC CTCCGCACTC ATGGGAATGT
241GTGGCAGTAG AAGCGCTGAT AACTTGTCAT GCCCTTCTCC ATTGAATGTA ATGGAACCAG
301TCACTGAACT GATGCAGGAG CAGTCATACC TGAAGTCTGA ATTGGGCCTG GGACTTGGAG
361AAATGGGATT TGAAATTCCT CCTGGAGAAA GCTCAGAATC TGTTTTTTCC CAAGCAACAT
421CAGAATCATC TTCTGTATGT TCTGGTCCCT CTCATGCTAA CAGAAGAACT GGAGTACCTT
481CTACTGCCTC AGTGGGCAAA TCCAAAACCC CATTAGTGGC AAGGAAGAAA GTGTTCCGAG
541CATCGGTGGC TCTAACGCCA ACAGCTCCTT CTAGAACAGG CTCTGTGCAG ACACCTCCAG
601ATTTGGAAAG TTCTGAGGAA GTTGATGCAG CTGAAGGAGC CCCAGAAGTT GTAGGACCTA
661AATCTGAAGT GGAAGAAGGG CATGGAAAAC TCCCATCAAT GCCAGCTGCT GAGGAAATGC
721ATAAAAATGT GGAGCAAGAT GAGTTGCAGC AAGTCATACG GGAGATTAAA GAGTCTATTG
781TTGGGGAAAT CAGACGGGAA ATTGTAAGTG GACTTTTGGC AGCAGTATCT TCAAGTAAAG
841CGTCTAATTC TAAGCAAGAT TATCATTACC CAACTTTCTT GTACAAAGTt ggcattataa
901gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)