Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11229
- Subject:
- XR_001748866.2
- Aligned Length:
- 5696
- Identities:
- 597
- Gaps:
- 5099
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCACTCCCGGCCTTAGTCGGGTGCGCGCGTGCAGGGCTGTTTCCGGCTTAGACTCAGTGGACCGGAATCTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGGGTGTACCTGGCTGAGTCTCTGTGGCCGCGGAGGCGCGGAGCTAAGCGGCTCGGATTATCCTGGGCAGAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGAGACTTGACCAGCTAAACACTTCCGTCGGTCCGGGGCGTGGACGGGGCCAGATCAGCCTCCTGCTCTCCCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTCAGGGCCACGGAAAGGCACAAATCCATCCGTGCGACTCCTGGTACCCAGACCGGGAGGTTGTCTAGTCACG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGCGGTCTGTGTTGGGCGAGAGCTGAGGAGCCGGCGTCCCTGCCAACGACTCGGCCCCGGGACGGTCAGGAGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGGGCCCTGGTCCCGCACCTGTCTTCGGGCGGACGCATCCCTCACGGTCTCTCCGCAGCCCGCGGGTCCTGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCGCAGGCAGCGCGCGAACGTGGGCGTGGGGATGGCCACCAGTTTCCGGACAGCTTCGTGCTGGCCTGTAACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACATGGGAGGTCTAAACTGGAAATACATAAAGACACCTTATTGTATTCGTGGAAGCTCAGAGTGTGACCAACT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAACCCTCAAGAGGACCGAGATTTAAAGTAACCAGCTTGATAAGCACCTCAACGTAATAAGGGCACAGTAGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCTTCATTTTTCTCATCACAGCCTCAGGCTTCCTGTCAGCCCTTCCCTAGTGCTCGTCGTGAGGAGAGCTGATG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGCTCTGGTCACAGCCTTGTTTGTTATTGACTCTCAGTTACTTTCAGGTATGGGAAAGTTCAGTCCACACTCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACTCCAAGCTCTTGTACCTCCCCTCATTCTAGCCTGCAGAGGGGAGATGGAGGAGGCTTGTCTGTATTCCCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCATTTACTTGTTGCCCTCCGACGGGGGCTCCTTCTGGGTTGGGGTGGGAAAATCAGTGGTTAGAGAAAAAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CACAGAGTCTCCTGTTGTGCGGTGGTCAGTACCCAGAGTTATGACAGGCATCAGTGGGGCTTGGTTGGAGCCTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGACAGGGCTCTGCCCTGCAGTTCCATGGTGTATGTGATTCTTTCTCTCACTGCATGCAGACTCACCCAGAAGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCACTCACTGCCTCTTCCCCTGGGGTCTCCCTCCCTGCAGGTAGTGCTGCTGAGGAGGAGCCTGCTAATGAGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAAGTGTCAAGTTCGGGAATCTTCTGGGTGTTCCTTGGGCCCAGGGAAACAGTGCCCTGCCTGAGGGATTATTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCATTCAAGGATATATCTATGGAGTTCACCTGGGATGAATGGCAGCTACTGGATTCTACACAGAAGTACCTGTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CAGAGATGTGATATTGGAAAACTATCATAACCTGATATCAGTGGGGTATCATGGTACCAAGCCTGACTTAATCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCAAGTTGGAACAAGGAGAAGATCCATGGATAATAAATGCCAAAATTTCCAGGCAGAGCTGTCCAGATGGCTGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAAGAATGGTACCAGAACAATCAAGATGAGCTTGAGAGTATTGAAAGAAGCTATGCTTGTAGTGTGTTGGGAAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACTTAATCTGAGCAAAACCCATGATTCTTCAAGACAGAGACTCTATAACACACGTGGAAAAAGTTTGACACAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACTCAGCTCCAAGCAGAAGTTATTTAAGAAAGAATCCTGATAAGTTTCATGGTTATGAAGAACCATATTTTCTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGCATCAAAGAGCTCATAGCATAGAAAAAAACTGTGTGTGTAGTGAATGTGGGAAAGCTTTTCGTTGTAAGTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACAGCTCATTGTACATCTCAGAATTCATACAGGAGAGAGACCTTATGAATGCAGTAAATGTGAAAGAGCCTTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTGCCAAGTCAAACCTTAATGCTCATCAGAGAGTTCATACAGGAGAAAAACCCTACTCATGTAGTGAGTGCGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGGTCTTCTCTTTCAGGTCACAGCTCATTGTCCATCAGGAAATTCACACAGGAGGGAAACCCTATGGCTGCAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGAATGTGGGAAAGCCTACAGTTGGAAATCACAGCTTCTTTTACACCAGAGAAGTCACACAGGAGTGAAACCGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATGAATGCAGCGAATGTGGGAAAGCCTTTAGTTTGAAGTCTCCATTCGTTGTACACCAGAGAACTCATACAGGA 2146
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 2147 GTGAAACCCCATAAATGCAGTGAATGTGGGAAAGCCTTTAGGAGTAAGTCCTATCTCCTTGTTCACATCCGAAT 2220
Query 3 GCATACAGGAGAAAAACCCTATCAATGCAGTGATTGTGGGAAAGCCTTCAATATGAAGACACAACTCATTGTAC 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GCATACAGGAGAAAAACCCTATCAATGCAGTGATTGTGGGAAAGCCTTCAATATGAAGACACAACTCATTGTAC 2294
Query 77 ATCAGGGAGTTCACACAGGAAATAATCCTTATCAATGCGGTGAATGTGGGAAAGCCTTTGGTAGGAAGGAACAG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 ATCAGGGAGTTCACACAGGAAATAATCCTTATCAATGCGGTGAATGTGGGAAAGCCTTTGGTAGGAAGGAACAG 2368
Query 151 CTCACTGCACATCTGAGAGCTCATGCAGGAGAGAAGCCCTATGGATGCAGTGAATGTGGGAAGGCTTTCAGCAG 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CTCACTGCACATCTGAGAGCTCATGCAGGAGAGAAGCCCTATGGATGCAGTGAATGTGGGAAGGCTTTCAGCAG 2442
Query 225 CAAGTCATACCTTGTTATACATAGGAGAACACACACCGGAGAGAGACCCTATGAATGTAGTTTGTGTGAGAGAG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CAAGTCATACCTTGTTATACATAGGAGAACACACACCGGAGAGAGACCCTATGAATGTAGTTTGTGTGAGAGAG 2516
Query 299 CCTTTTGTGGAAAATCACAGCTGATTATACATCAGAGAACTCATTCAACTGAGAAGCCCTATGAATGCAATGAA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CCTTTTGTGGAAAATCACAGCTGATTATACATCAGAGAACTCATTCAACTGAGAAGCCCTATGAATGCAATGAA 2590
Query 373 TGTGAAAAAGCCTACCCTAGGAAGGCATCACTTCAGATACACCAGAAAACTCATTCGGGAGAGAAACCTTTTAA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TGTGAAAAAGCCTACCCTAGGAAGGCATCACTTCAGATACACCAGAAAACTCATTCGGGAGAGAAACCTTTTAA 2664
Query 447 ATGCAGTGAATGTGGAAAAGCCTTCACTCAGAAGTCATCTCTCAGTGAACATCAGAGAGTTCACACCGGAGAGA 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 ATGCAGTGAATGTGGAAAAGCCTTCACTCAGAAGTCATCTCTCAGTGAACATCAGAGAGTTCACACCGGAGAGA 2738
Query 521 AACCATGGAAATGCTCTGAATGTGGGAAATCCTTCTGTTGGAATTCAGGGCTTCGTATACATCGGAAGACTCAT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 AACCATGGAAATGCTCTGAATGTGGGAAATCCTTCTGTTGGAATTCAGGGCTTCGTATACATCGGAAGACTCAT 2812
Query 595 AAA----------------------------------------------------------------------- 597
|||
Sbjct 2813 AAATGAGAAATCAGAATGATGCAATGTGAGAAACTGATGTTCAGGAGACTTCGGATAATATAGACAGGATTTAC 2886
Query 598 -------------------------------------------------------------------------- 597
Sbjct 2887 AAGCAGGAGGCCCTAAAATTACACTCATGTCAAAAATCAGAGAGGAGAGAGACCAACCATATTTGGGATGAGTG 2960
Query 598 -------------------------------------------------------------------------- 597
Sbjct 2961 TAAAAGCTTTCAGAAATAAGTTACAAATCTTTGTAGATGAAAATAATGGAAGGAATGTGGAGCAATAAATGTAT 3034
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3035 CAAATGTTGTAGTATCATCATGAAGATTCAGAGAATTTACACTAGGAACACCTTATAAGTTGAATAAATTAAGG 3108
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3109 AAGCATTTTCCCATTGAAAGTGTGTTCCATGGAAAGTCACATTCCAGATTTGAAGCTGTGTTTTTGTAAAATAA 3182
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3183 AATCTTGGTATGAACAGTTGACTTCATGGTGGAGTATAAAGTTGTTTTTTTAAAAATATGTAAATAATGTTCAG 3256
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3257 GAAAAACGCAGGGAACAGAGTCTTAAAGTTAATGGATATTTAATGTGACTTTCCTGAGTTAACACTGAATAGTA 3330
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3331 TTTCTAAAATTTTTTGTACTTTATTTTTTAATGTAACTTGTTCTATCTATCTATATATATATTTGATAGTTTGT 3404
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3405 GGAATAATATCCCCCAGTATTTTCCATATTAAATGCTAATTATCTTTTGATTTCTTTTTCATAAGCAGATCTGG 3478
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3479 CATTTATTACAGGGCTGCCGCTTAAGAGAACTCATTATAATGAACGTTTATTATATTTTGCAGTTCCATGCCTG 3552
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3553 TTGTCCATTGATTGACATGAGCACCCCTGTTTTCTCTGGAGAAATACCTCCCCTCTCTGGGGTGCTTCCTGTGG 3626
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3627 TAGTGTCTTTCAGGTATCCGTTCCACTAGCTACAGGAATATCTGGGAAGAACCTGAGGACTCAGCCTAGCAAGC 3700
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3701 TCTTGTGATAGACTTTGAATAGCAGTATCTGCGAAGAACCTGAGGCCTCAGCCTAGCAAACTCTTCTGATAGAC 3774
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3775 TTTGAATAGGAATGTCTGGGAAGAACCTGAGGACTCAGCCTAGCAAACTCTTCTGATAGACTTTGAATAGGAGT 3848
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3849 ATCTGGGAAGAACCTGAGGACTCAGCCTAGCAAACTCTTCTGATAGACTTTGAATAGGAATGTCTGGGAAGAAC 3922
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3923 CTGAGGACTCAGCCTAGCAAACTCTTCTGATAGACTTTGAATAGGAGTATCTGGGAAGAACCTGAGGACTCAGC 3996
Query 598 -------------------------------------------------------------------------- 597
Sbjct 3997 CTAGCAAACTCTTCTGATAGACTTTGCACTGCAGATGCTTCATTTAAGGCTATAGAGTAGATGTTGGCAATATA 4070
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4071 TAAAATTCAAACTTGAGTGTCCATAAATAACTGTTGTTGGAACATGGCTAAATATATTTGTGTATTATTTGACT 4144
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4145 GCTTTTGCACAGCCATGGCACAGTTGAGTAGTTGAGGTATAAAAAACCTGCCACCTCCTGATACAGATAGAACC 4218
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4219 CCTTCCCTTTTCTGGGAAAATGTGGAATTTGCCTTGCAGGAGGAAGCTTATTCTGCCAGTTCCCCATGGCTTAT 4292
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4293 TTTTACCAGTTTGGTAACAATAATCTACACTAAACATGCCCTGGGATGGGATTGCTCATTTAGGAAAATATGTA 4366
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4367 GAATTCATAGAGCATTGCAGGAATGAGTAATGTATCAAAACTTCTCAGCATGACAACACCCAGGGCAACGTGAC 4440
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4441 AAAACCCTGTCTACAAAAGTTTCTTAAAAGCTGGTTACAGCGGTGCACACCTGCAATCCCAGCTACTCAGGAGG 4514
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4515 TTGAGGCAGGAGGATCACTTGAGCCCAGGAGGTCAAGGATGCAGTGAGCTGCACTGTACTCCAGTCTGGGCAAC 4588
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4589 AGTGAGACCCTGTCTCAAAAAAAAAGTTGGGGGAGGGGGTAGATACTTGTGAAATCCTTTGAGGGTGTTCAGTG 4662
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4663 AAGGGCAATTACTTACAGCATATACTTGGTGCACTGACACCCAGCAGTGATGATGGTTTTGCTTTCTGTTTTTT 4736
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4737 TTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTGAGACGGAGTCTTGTTCTGTCACCCAGGCTGGAGTGAATTGCA 4810
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4811 CAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCATAGTAGCTGGG 4884
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4885 ATTACAGGTGTGTGCCACCGCGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCACGTTGGCCA 4958
Query 598 -------------------------------------------------------------------------- 597
Sbjct 4959 GGCTGGTCTTGAATTCCTGACCTCAGGTAATCCACCTGCCTCGGCCTCCCGAAGTGCCGGGATTACAGGCGTGA 5032
Query 598 -------------------------------------------------------------------------- 597
Sbjct 5033 GCCACCATGCCTGACCATGATGATGGTTTTAAAAGTTAGCTGTAGCAGCTAAGGCAAGACCAGATCCAACACTG 5106
Query 598 -------------------------------------------------------------------------- 597
Sbjct 5107 GCTTATGGCAAGGGGAAGAACAAAAGTCAGGAACTTTGCCATAATCTAGAAGAAAGAATGATAATGCTTTGTGA 5180
Query 598 -------------------------------------------------------------------------- 597
Sbjct 5181 CATGCTGGATTGTATCCATTATGTGTTCCTAAGACCCTCAGCCCTCTCCCTCCACCAAGACCCAATAAAAGTGT 5254
Query 598 -------------------------------------------------------------------------- 597
Sbjct 5255 GTTATTGAAAGTAGTAGCTACTGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGG 5328
Query 598 -------------------------------------------------------------------------- 597
Sbjct 5329 TGGGTGGATCACAAGGTCGGGAGTTCGAGTTCAGCCTGGCCAATATGGTGAAATCCCGTCTCAACTAAAAATAC 5402
Query 598 -------------------------------------------------------------------------- 597
Sbjct 5403 AAAAATTAGTCGGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTGG 5476
Query 598 -------------------------------------------------------------------------- 597
Sbjct 5477 AACCCGGGAGGTGGAGGTGGCAGTGAGCAGAGATTGCGCCATTGCACTCCAGCCTGGGTGACAGAGTGAGACTC 5550
Query 598 -------------------------------------------------------------------------- 597
Sbjct 5551 TGTCTCAAAAAAAAAAAAAAAAAGAAAAGAAAATGACAAACACATGTTCTGTGTATATGACACAATCCTAACTG 5624
Query 598 ------------------------------------------------------------------------ 597
Sbjct 5625 TGGCATGTATCTATGTCTTCACTTGCATCGGCCTCAATTATCAACTTGTGGCAAAAGAATAAGAAAGAGAAC 5696
