Construct: ORF ccsbBroadEn_11229
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009879.1_s300c1, BRDN0000393530
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF26 (7574)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_001256280.2 | 39.7% | 39.7% | 1_906del |
| 2 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_001330513.2 | 38.7% | 38.7% | 1_942del |
| 3 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_001330514.2 | 38.7% | 38.7% | 1_942del |
| 4 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_005266183.3 | 38.7% | 38.7% | 1_942del |
| 5 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_017019922.1 | 38.7% | 38.7% | 1_942del |
| 6 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_017019923.1 | 38.7% | 38.7% | 1_942del |
| 7 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_019591.4 | 37.3% | 37.3% | 1_1002del |
| 8 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_017019921.1 | 36.4% | 36.4% | 1_1041del |
| 9 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_001256279.2 | 35.1% | 35.1% | 1_1101del |
| 10 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_017019920.1 | 34.6% | 34.6% | 1_1128del |
| 11 | human | 7574 | ZNF26 | zinc finger protein 26 | XR_001748865.1 | 10.9% | 1_2218del;2816_5462del | |
| 12 | human | 7574 | ZNF26 | zinc finger protein 26 | XR_001748866.2 | 10.4% | 1_2218del;2816_5696del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 663
- ORF length:
- 597
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA TACAGGAGAA AAACCCTATC AATGCAGTGA TTGTGGGAAA GCCTTCAATA 121 TGAAGACACA ACTCATTGTA CATCAGGGAG TTCACACAGG AAATAATCCT TATCAATGCG 181 GTGAATGTGG GAAAGCCTTT GGTAGGAAGG AACAGCTCAC TGCACATCTG AGAGCTCATG 241 CAGGAGAGAA GCCCTATGGA TGCAGTGAAT GTGGGAAGGC TTTCAGCAGC AAGTCATACC 301 TTGTTATACA TAGGAGAACA CACACCGGAG AGAGACCCTA TGAATGTAGT TTGTGTGAGA 361 GAGCCTTTTG TGGAAAATCA CAGCTGATTA TACATCAGAG AACTCATTCA ACTGAGAAGC 421 CCTATGAATG CAATGAATGT GAAAAAGCCT ACCCTAGGAA GGCATCACTT CAGATACACC 481 AGAAAACTCA TTCGGGAGAG AAACCTTTTA AATGCAGTGA ATGTGGAAAA GCCTTCACTC 541 AGAAGTCATC TCTCAGTGAA CATCAGAGAG TTCACACCGG AGAGAAACCA TGGAAATGCT 601 CTGAATGTGG GAAATCCTTC TGTTGGAATT CAGGGCTTCG TATACATCGG AAGACTCATA 661 AATGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 721 gcaacgaac