Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11274
Subject:
NM_001370663.1
Aligned Length:
2353
Identities:
1331
Gaps:
992

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTCGTCAACCCGGAGCCAGAACCCCCACGGCCTGAAGCAGATTGGCCTGGACCAGATCTGGGACGACCTCAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCGGCATCCAGCAGGTGTACACACGGCAGAGCATGGCCAAGTCCAGATATATGGAGCTCTACACTCATGTTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATAACTACTGTACTAGTGTTCACCAGTCAAACCAAGCACGAGGAGCTGGAGTTCCTCCTTCTAAGTCGAAAAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGCAGACACCTGGAGGAGCTCAGTTTGTTGGCCTGGAATTATATAAACGACTTAAGGAATTTTTGAAGAATTA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTGACAAATCTTCTTAAGGATGGAGAAGATTTGATGGATGAGAGTGTACTGAAATTCTACACTCAACAATGGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAGATTATCGATTTTCAAGCAAAGTGCTGAATGGAATTTGTGCCTACCTCAATAGACATTGGGTTCGCCGTGAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGTGACGAAGGACGAAAAGGAATATATGAAATCTATTCGCTTGCATTGGTGACTTGGAGAGACTGTCTGTTCAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCCACTGAATAAACAGGTAACAAATGCTGTTTTAAAGCTGATTGAAAAGGAAAGGAATGGTGAAACCATCAATA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAAGATTGATTAGTGGAGTTGTACAGTCTTACGTGGAATTGGGGCTGAATGAAGATGATGCATTTGCAAAGGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCTACGTTAACAGTGTATAAAGAATCCTTTGAATCTCAATTTTTGGCTGACACAGAGAGATTTTATACCAGAGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGTACTGAATTCTTGCAGCAGAACCCAGTTACTGAATATATGAAAAAGGCAGAGGCTCGTCTGCTTGAGGAAC  814

Query    1  -------------------------------------------------------ATG----CAAG--------  7
                                                                   |||    ||||        
Sbjct  815  AACGAAGAGTTCAGGTTTACCTTCATGAAAGCACACAAGATGAATTAGCAAGGAAATGTGAACAAGTCCTCATT  888

Query    8  --------CTCGGAA-----------------TCAATATTTAGTTTTGAGTGTGGAGAA-----TAGATTGT--  49
                    ||.||||                 |||..|||||   |||..||..||.||     .||||| |  
Sbjct  889  GAAAAACACTTGGAAATTTTCCACACAGAATTTCAGAATTTA---TTGGATGCTGACAAAAATGAAGATT-TGG  958

Query   50  --------TTTTTTCTTTTATATATATAAACAAAATGTCCTATGTG-TTTCAACGATGGTACCAAAAGTATT--  112
                    |.|..||||.|||.||.| |..||..|||.||||.|.| .||.||          ||||.|.||  
Sbjct  959  GACGCATGTATAATCTTGTATCTAGA-ATCCAGGATGGCCTAGGAGAATTGAA----------AAAACTGTTGG  1021

Query  113  ----------------------TCTTGCTCTTATCTCTTAACTTTGAAAAG---------------------GA  143
                                  ||||||    |.|      |.||||||||                     ||
Sbjct 1022  AGACACACATTCATAATCAGGGTCTTGC----AGC------CATTGAAAAGTGTGGAGAAGCTGCTTTAAATGA  1085

Query  144  CCCCAAAATGTATGTACAGACAGTGCTTGATGTTCATAGAAAATACAATGCCCTGGTAATGTCTGCATTCAACA  217
            ||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1086  CCCCAAAATGTATGTACAGACAGTGCTTGATGTTCATAAAAAATACAATGCCCTGGTAATGTCTGCATTCAACA  1159

Query  218  ATGACGCTGGCTTTGTGGCTGCTCTTGATAAGGCTTGTGGTCGCTTCATAAACAACAACGCGGTTACCAAGATG  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160  ATGACGCTGGCTTTGTGGCTGCTCTTGATAAGGCTTGTGGTCGCTTCATAAACAACAACGCGGTTACCAAGATG  1233

Query  292  GCCCAATCATCCAGTAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCCTTGTTGAAGAAAAGTTCCAAGAA  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234  GCCCAATCATCCAGTAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCCTTGTTGAAGAAAAGTTCCAAGAA  1307

Query  366  CCCAGAGGAGGCAGAACTAGAAGACACACTCAATCAAGTGATGGTTGTCTTCAAGTACATAGAAGACAAAGACG  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308  CCCAGAGGAGGCAGAACTAGAAGACACACTCAATCAAGTGATGGTTGTCTTCAAGTACATAGAAGACAAAGACG  1381

Query  440  TATTTCAGAAGTTCTATGCGAAGATGCTCGCCAAGAGGCTCGTCCACCAGAACAGTGCAAGTGACGATGCCGAA  513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382  TATTTCAGAAGTTCTATGCGAAGATGCTCGCCAAGAGGCTCGTCCACCAGAACAGTGCAAGTGACGATGCCGAA  1455

Query  514  GCCAGCATGATCTCCAAGTTAAAGCAAGCTTGCGGGTTCGAGTACACCTCTAAACTTCAGCGCATGTTTCAAGA  587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456  GCCAGCATGATCTCCAAGTTAAAGCAAGCTTGCGGGTTCGAGTACACCTCTAAACTTCAGCGCATGTTTCAAGA  1529

Query  588  CATTGGCGTGAGCAAAGATCTGAACGAGCAATTCAAAAAGCACTTGACAAACTCAGAACCCCTAGACTTGGATT  661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530  CATTGGCGTGAGCAAAGATCTGAACGAGCAATTCAAAAAGCACTTGACAAACTCAGAACCCCTAGACTTGGATT  1603

Query  662  TCAGCATTCAAGTGCTGAGCTCCGGGTCCTGGCCCTTCCAGCAGTTTTGTACATTTGCCTTGCCGTCAGAGTTG  735
            |||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 1604  TCAGCATTCAAGTGCTGAGCTCCGGGTCCTGGCCCTTCCAGCAGTCTTGTACATTTGCCTTGCCGTCAGAGTTG  1677

Query  736  GAACGTAGTTATCAGCGATTCACAGCTTTCTACGCCAGCCGCCACAGTGGCCGAAAATTGACGTGGTTATATCA  809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678  GAACGTAGTTATCAGCGATTCACAGCTTTCTACGCCAGCCGCCACAGTGGCCGAAAATTGACGTGGTTATATCA  1751

Query  810  GTTGTCTAAAGGAGAATTGGTAACTAACTGCTTCAAAAACAGATATACTTTGCAGGCGTCGACATTCCAGATGG  883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752  GTTGTCTAAAGGAGAATTGGTAACTAACTGCTTCAAAAACAGATATACTTTGCAGGCGTCGACATTCCAGATGG  1825

Query  884  CTATCCTGCTTCAGTACAACACGGAAGATGCCTACACTGTGCAGCAGCTGACCGACAGCACTCAAATTAAAATG  957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826  CTATCCTGCTTCAGTACAACACGGAAGATGCCTACACTGTGCAGCAGCTGACCGACAGCACTCAAATTAAAATG  1899

Query  958  GACATTTTGGCGCAAGTTTTACAGATTTTATTAAAGTCGAAGCTATTGGTCTTGGAAGATGAAAATGCAAATGT  1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900  GACATTTTGGCGCAAGTTTTACAGATTTTATTAAAGTCGAAGCTATTGGTCTTGGAAGATGAAAATGCAAATGT  1973

Query 1032  TGATGAGGTGGAATTGAAGCCAGATACCTTAATAAAATTATATCTTGGTTATAAAAATAAGAAATTAAGGGTTA  1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974  TGATGAGGTGGAATTGAAGCCAGATACCTTAATAAAATTATATCTTGGTTATAAAAATAAGAAATTAAGGGTTA  2047

Query 1106  ACATCAATGTGCCAATGAAAACCGAACAGAAGCAGGAACAAGAAACCACACACAAAAACATCGAGGAAGACCGC  1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048  ACATCAATGTGCCAATGAAAACCGAACAGAAGCAGGAACAAGAAACCACACACAAAAACATCGAGGAAGACCGC  2121

Query 1180  AAACTACTGATTCAGGCGGCCATCGTGAGAATCATGAAGATGAGGAAGGTTCTGAAACACCAGCAGTTACTTGG  1253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2122  AAACTACTGATTCAGGCGGCCATCGTGAGAATCATGAAGATGAGGAAGGTTCTGAAACACCAGCAGTTACTTGG  2195

Query 1254  CGAGGTCCTCACTCAGCTGTCCTCCAGGTTCAAACCTCGAGTCCCTGTGATCAAGAAATGCATTGACATTCTAA  1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196  CGAGGTCCTCACTCAGCTGTCCTCCAGGTTCAAACCTCGAGTCCCTGTGATCAAGAAATGCATTGACATTCTAA  2269

Query 1328  TTGAGAAAGAATATTTGGAGCGAGTGGATGGTGAAAAGGACACCTACAGTTACTTGGCT  1386
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270  TTGAGAAAGAATATTTGGAGCGAGTGGATGGTGAAAAGGACACCTACAGTTACTTGGCT  2328

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