Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11286
- Subject:
- NM_012061.3
- Aligned Length:
- 4086
- Identities:
- 2122
- Gaps:
- 1761
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCTGGACCCTTCGTCCAGCGAAGAGGAGTCAGATGAGATCCTGGAAGAGGAGAGGGGCAAGGATGTGCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCGGCCGCGTCTGGAGCGCGCCTGTCTCCCAGCCGCACCAGCGAGGGCTCGGCAGGCAGCGCCGGGATGGGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCAGTGGCGCCGGGGCCGGGGTGGGCGCCGGCGGCGGTGGGGGTAGCGGCGCGAGCAGCGGCGGCGGGGCCGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGCTGCAGCCCAGCAGCCGCGCCGGCGGCGGCCGGCCTTCCAGCCCTAGCCCGTCGGTGGTGAGCGAGAAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGGAAGAGTTGGAGAGGCTGCAGAAGGAGGAGGAAGAGAGGAAGAAGAGGCTGCAGCTGTACGTGTTCGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCGCTGCATCGCCTACCCCTTCAACGCCAAGCAGCCCACCGACATGGCTCGGCGGCAGCAGAAGATCAGCAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGCAGCTACAGACTGTCAAAGACCGGTTCCAGGCTTTTCTCAATGGGGAGACCCAAATCGTAGCTGATGAAGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTTATGAATGCTGTCCAGAGCTACTATGAGGTGTTTCTCAAGAGTGACCGTGTGGCCCGCATGGTGCAGAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGGCTGCTCAGCCAATGACTCTCGGGAGGTCTTCAAGAAACACATCGAGAAGAGGGTGCGCAGCCTACCTGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTGACGGCCTCAGCAAGGAGACAGTGCTAAGCTCTTGGATGGCCAAGTTTGATGCCATCTACCGTGGTGAGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGACCCCAGGAAGCAGCAAGCCCGGATGACAGCCAGTGCAGCTTCTGAGTTGATTCTGAGCAAGGAACAGCTCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGAGATGTTTCAGAACATTCTTGGGATCAAGAAGTTTGAACATCAACTCCTGTATAATGCCTGTCAGCTGGAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATCCAGATGAGCAGGCAGCCCAGATCAGACGAGAGCTGGATGGACGTCTCCAAATGGCAGATCAAATAGCCAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAACGCAAATTTCCTAAGTTCGTATCCAAAGAAATGGAAAACATGTACATTGAGGAGCTGAAGTCCTCCGTCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACCTGCTCATGGCCAACTTGGAGAGCATGCCGGTGTCCAAGGGTGGAGAGTTCAAGCTACAGAAACTGAAACGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGTCACAATGCTTCCATCATTGACATGGGTGAGGAGAGTGAGAACCAGCTTTCTAAGTCAGATGTCCTGCTGTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTCTCCTTGGAGGTGGTGATCATGGAAGTCCAAGGCCTTAAGTCCTTGGCTCCAAATCGAATTGTATACTGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAATGGAGGTGGAGGGTGGAGAGAAACTTCAGACAGATCAAGCAGAGGCTTCTAAACCAACCTGGGGCACTCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGCGACTTCTCCACAACCCATGCGCTGCCAGCTGTTAAAGTAAAACTATTCACAGAGAGCACTGGTGTCCTGGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTTGGAAGACAAGGAACTCGGGCGGGTGATCCTCCATCCCACCCCAAATAGCCCCAAACAATCTGAGTGGCACA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAATGACAGTCTCCAAAAACTGCCCCGATCAAGACCTCAAAATCAAACTTGCTGTCCGAATGGATAAGCCTCAA 1554
Query 1 ---ATGAAGCATTCTGGGTATTTATGGGCCATCGGTAAGAATGTCTGGAAGAGATGGAAGAAAAGGTTTTTTGT 71
||||||||.||||||||.||||||.||||.|||||||||||.||||||||.||||||||.|||||.|||||
Sbjct 1555 AACATGAAGCACTCTGGGTACTTATGGACCATTGGTAAGAATGTGTGGAAGAGGTGGAAGAAGAGGTTCTTTGT 1628
Query 72 ATTGGTGCAGGTCAGTCAGTACACGTTTGCCATGTGCAGTTATCGGGAGAAGAAAGCGGAGCCTCAGGAACTTC 145
.||||||||||||||.||||||||.||||||||||||||.|||||.||.|||||.||.||||||||||||||.|
Sbjct 1629 GTTGGTGCAGGTCAGCCAGTACACTTTTGCCATGTGCAGCTATCGAGAAAAGAAGGCAGAGCCTCAGGAACTCC 1702
Query 146 TACAATTGGATGGCTACACTGTGGATTACACCGACCCCCAGCCAGGTTTGGAGGGTGGCCGAGCCTTCTTCAAT 219
||||..||||.||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1703 TACAGCTGGACGGCTACACCGTGGATTACACCGACCCTCAGCCAGGTTTGGAGGGTGGCCGAGCCTTCTTCAAT 1776
Query 220 GCTGTCAAGGAGGGAGACACCGTGATATTTGCCAGTGACGATGAACAAGACCGCATCCTGTGGGTCCAGGCCAT 293
||.|||||.||.||||||||.|||||||||||.|||||.|||||||||||.||.||..||||||||||.||.||
Sbjct 1777 GCAGTCAAAGAAGGAGACACGGTGATATTTGCAAGTGATGATGAACAAGATCGAATTTTGTGGGTCCAAGCTAT 1850
Query 294 GTATCGGGCCACGGGGCAGTCACACAAGCCTGTGCCCCCGACCCAAGTCCAGAAACTCAACGCCAAGGGAGGAA 367
|||..|||||||.||.|||||.|||||.|||||.|||||.|||||.||.|||||.||||||||||||||.||||
Sbjct 1851 GTACAGGGCCACTGGCCAGTCGCACAAACCTGTTCCCCCTACCCAGGTGCAGAAGCTCAACGCCAAGGGCGGAA 1924
Query 368 ATGTACCTCAGCTGGATGCCCCTATCTCTCAATTTTACGCAGATAGAGCTCAAAAACATGGCATGGATGAATTT 441
||||.|||||||||||||||||.|||||.|||||||||||||||||||||||.||.||||||||||||||||||
Sbjct 1925 ATGTGCCTCAGCTGGATGCCCCCATCTCACAATTTTACGCAGATAGAGCTCAGAAGCATGGCATGGATGAATTT 1998
Query 442 ATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTACAACGCCTTACTTTGGATCACAG 515
||||||||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||||||||||||||
Sbjct 1999 ATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTGCAGCGGCTGACTTTGGATCACAG 2072
Query 516 ACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTACTAGACGAGTATTGCGCCC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||..||||.||||||||||||.
Sbjct 2073 ACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTGTTAGATGAGTATTGCGCCA 2146
Query 590 GAAATGGAGTCCGGGGGTGTCACCGACATCTCTGCTACCTCAGAGACTTGCTTGAACGGGCAGAAAATGGCGCC 663
|||||||||||||.||.||||||||.||||||||||||||.|||||||||||.|||||.||||||||||||||.
Sbjct 2147 GAAATGGAGTCCGAGGATGTCACCGGCATCTCTGCTACCTTAGAGACTTGCTGGAACGAGCAGAAAATGGCGCG 2220
Query 664 ATGATCGACCCCACCCTTCTTCACTACAGCTTTGCCTTCTGTGCATCCCATGTCCATGGGAACAGGCCTGATGG 737
|||||.||||||||.||||||||||||||||||||||||||.||.||||||||||||||.||||||||||||||
Sbjct 2221 ATGATTGACCCCACGCTTCTTCACTACAGCTTTGCCTTCTGCGCGTCCCATGTCCATGGTAACAGGCCTGATGG 2294
Query 738 AATTGGAACTGTGACTGTTGAAGAAAAGGAACGTTTTGAAGAAATCAAAGAGAGGCTCCGAGTTCTGCTAGAAA 811
|||.|||||||||||||||||||||||.|||||.||||||||||||||||||||.||||||||||||||.||||
Sbjct 2295 AATCGGAACTGTGACTGTTGAAGAAAAAGAACGCTTTGAAGAAATCAAAGAGAGACTCCGAGTTCTGCTGGAAA 2368
Query 812 ATCAGATTACACATTTTAGGTATTGCTTTCCATTTGGTCGACCTGAAGGTGCTTTGAAAGCTACTCTCTCACTC 885
||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 ATCAAATTACACATTTCAGGTACTGCTTTCCATTTGGTCGACCTGAAGGTGCTTTGAAAGCTACTCTCTCACTC 2442
Query 886 TTGGAAAGGGTTTTGATGAAAGATATTGTTACCCCAGTGCCACAAGAGGAGGTAAAAACAGTTATCCGTAAATG 959
||||||.||||||||||||||||||||||.||.|||||.||||||||.|||||.|||||.||.|||||||||||
Sbjct 2443 TTGGAACGGGTTTTGATGAAAGATATTGTCACTCCAGTACCACAAGAAGAGGTCAAAACTGTCATCCGTAAATG 2516
Query 960 TCTGGAACAGGCTGCGTTAGTCAACTATTCTCGGCTCTCAGAGTATGCCAAAATCGAAGAGAATCAAAAG---- 1029
.||.||.||||||||..||||||||||.||.||.||.||.||||||||||||||.||||.|| |||||
Sbjct 2517 CCTAGAGCAGGCTGCTCTAGTCAACTACTCACGCCTATCTGAGTATGCCAAAATTGAAGGGA---AAAAGAGAG 2587
Query 1030 ----------------------------------------GATGCA----------GAAAATGTAGGCCGGTTA 1053
||||.| .|||||||||||||.|||
Sbjct 2588 AAATGTATGAGCATCCTGTCTTCTGCTTGGCCTCCCAAGTGATGGATTTAACCATTCAAAATGTAGGCCGCTTA 2661
Query 1054 ATCACTCCTGCCAAAAAGCTTGAAGATACAATACGTCTTGCTGAACTAGTCATTGAAGTTCTTCAGCAAAATGA 1127
||||||||.|||||||||||.|||||.|||||.||||||||||||||||||||.|||||.||.||.|||||.||
Sbjct 2662 ATCACTCCCGCCAAAAAGCTCGAAGACACAATCCGTCTTGCTGAACTAGTCATCGAAGTACTGCAACAAAACGA 2735
Query 1128 GGAGCACCACGCAGAGGCCTTTGCGTGGTGGTCAGATTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCT 1201
||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 2736 GGAGCACCACGCCGAGGCCTTTGCGTGGTGGTCAGACTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCT 2809
Query 1202 TTGCAGTAGACATGGATGCAGCCTTAGAGGTGCAACCTCCAGACACATGGGACAGTTTTCCACTATTTCAGCTG 1275
|||||||.|||||||||||||||||||||||||||||.||||||||.|||||||||||.|||||.||.||||||
Sbjct 2810 TTGCAGTGGACATGGATGCAGCCTTAGAGGTGCAACCCCCAGACACGTGGGACAGTTTCCCACTCTTCCAGCTG 2883
Query 1276 CTGAATGATTTTCTCCGTACTGACTATAATTTGTGCAATGGAAAATTTCACAAACACCTGCAAGACCTGTTTGC 1349
||||||||.|||||||||||.|||||||||||||||||||||||.|||||||||||||||||.||||||||.||
Sbjct 2884 CTGAATGACTTTCTCCGTACAGACTATAATTTGTGCAATGGAAAGTTTCACAAACACCTGCAGGACCTGTTCGC 2957
Query 1350 CCCACTTGTTGTTAGATATGTGGATCTGATGGAGTCCTCAATTGCACAATCCATTCACAGGGGCTTTGAGCGGG 1423
|||||||||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||
Sbjct 2958 CCCACTTGTTGTTAGATATGTGGATCTGATGGAGTCCTCCATTGCACAATCTATCCACAGGGGCTTTGAGCGGG 3031
Query 1424 AGTCATGGGAACCAGTCA-------------------------------------------------------- 1441
||||||||||.|||||||
Sbjct 3032 AGTCATGGGAGCCAGTCAAGAGTTTAACCAGTAACCTACCCAATGTGAACCTACCCAATGTGAACCTACCCAAA 3105
Query 1442 -------------------------------------------------------------------------- 1441
Sbjct 3106 GTACCAAATCTACCAGTTAACATCCCTCTAGGCATCCCACAGATGCCCACTTTTTCGGCACCGTCATGGATGGC 3179
Query 1442 -----------------ATAATGGGTCAGGCACCTCAGAAGATCTGTTTTGGAAACTTGACGCCCTTCAGACCT 1498
|||||||.|||||.||.|||||||||.||||.|||||||||||.|||||||||||.|
Sbjct 3180 TGCTATATATGATGCTGATAATGGATCAGGTACATCAGAAGATTTGTTCTGGAAACTTGATGCCCTTCAGACTT 3253
Query 1499 TCATTCGGGACCTGCACTGGCCTGAAGAAGAGTTTGGAAAGCACCTGGAACAACGGCTGAAGTTGATGGCAAGT 1572
||||.||.|||||.|||||||||||.||||||||||||||.|||.|.||.||.|||||.||..|||||||||||
Sbjct 3254 TCATCCGTGACCTACACTGGCCTGAGGAAGAGTTTGGAAAACACTTAGAGCAGCGGCTAAAACTGATGGCAAGT 3327
Query 1573 GACATGATCGAATCTTGTGTCAAAAGAACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAAC 1646
||||||||.||.||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3328 GACATGATTGAGTCCTGCGTCAAAAGAACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAAC 3401
Query 1647 AGATTTTCGAGTCCCACAGTCAATATGCACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAAC 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3402 AGATTTTCGAGTCCCACAGTCAATATGCACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAAC 3475
Query 1721 TTTGCAGCATGGAAATGGGCCAAGAGCATCAATACCATTCAAAAATAGACGAACTAATTGAAGAAACTGTTAAA 1794
|||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||
Sbjct 3476 TTTGCAGCATGGAAATGGGCCAAGAGCATCAATACCATTCAAAAATAGATGAACTAATTGAAGAAACCGTTAAA 3549
Query 1795 GAAATGATAACACTCTTGGTTGCAAAGTTCGTTACTATCTTGGAAGGAGTGCTGGCAAAATTATCCAGATATGA 1868
||||||||.|||||.|||||.||||||||.||.|||||.||||||||.||.||||||||.||||||||||||||
Sbjct 3550 GAAATGATCACACTTTTGGTGGCAAAGTTTGTAACTATATTGGAAGGCGTACTGGCAAAGTTATCCAGATATGA 3623
Query 1869 CGAAGGGACTTTGTTTTCTTCTTTTCTGTCATTTACCGTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAAC 1942
|||.|||||||||||||||||.|||||||||||.||.|||||||||||||||||.||||||||.||.|||||||
Sbjct 3624 CGAGGGGACTTTGTTTTCTTCGTTTCTGTCATTCACGGTGAAGGCAGCTTCCAAGTATGTGGACGTGCCTAAAC 3697
Query 1943 CCGGGATGGACGTGGCCGACGCCTACGTGACTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGTCAAT 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 3698 CCGGGATGGACGTGGCCGACGCCTACGTGACTTTCGTCCGCCATTCTCAGGATGTCCTTCGTGATAAGGTCAAT 3771
Query 2017 GGGGAGATGTACATAGAAAGGTTATTTGATCAATGGTACAACAGCTCCATGAACGTGATCTGCACCTGGTTGAC 2090
|.|||||||||.||||||||||||||||||||||||||||||||||||||||||.|.||||||||.|||.||||
Sbjct 3772 GAGGAGATGTATATAGAAAGGTTATTTGATCAATGGTACAACAGCTCCATGAACATCATCTGCACGTGGCTGAC 3845
Query 2091 GGACCGGATGGACTTACAGCTTCATATTTATCAGTTGAAAACACTAATTAGGATGGTAAAGAAAACCTACAGAG 2164
.|||.||||||||.|.|||||.||.|||||.|||.|||||||.||.||.||||||||||||||||||||.||||
Sbjct 3846 CGACAGGATGGACCTGCAGCTCCACATTTACCAGCTGAAAACCCTGATCAGGATGGTAAAGAAAACCTATAGAG 3919
Query 2165 ATTTCCGATTGCAAGGGGTCCTGGACTCCACCTTAAACAGCAAGACCTATGAAACGATCCGGAACCGTCTCACT 2238
|||||||||||||||||||||||||.||||||||||||||||||||||||||.||.|||||.||||||||||||
Sbjct 3920 ATTTCCGATTGCAAGGGGTCCTGGATTCCACCTTAAACAGCAAGACCTATGAGACCATCCGAAACCGTCTCACT 3993
Query 2239 GTGGAGGAAGCCACAGCATCAGTGAGTGAAGGTGGGGGACTGCAGGGCATCAGCATGAAGGACAGCGATGAGGA 2312
|||||||||||.|||||.|||||||||||.||||||||..|.||.||.|||||||||||||||||.||||||||
Sbjct 3994 GTGGAGGAAGCTACAGCGTCAGTGAGTGAGGGTGGGGGCTTACAAGGTATCAGCATGAAGGACAGTGATGAGGA 4067
Query 2313 AGACGAAGAAGACGAT 2328
|||.||||||||.|||
Sbjct 4068 AGATGAAGAAGATGAT 4083
