Construct: ORF ccsbBroadEn_11286

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013583.1_s300c1, BRDN0000395213
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CADPS (8618)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8618 CADPS calcium dependent secretion... XM_011534198.3 59.8% 59.7% 1_1563del;3581A>G
2 human 8618 CADPS calcium dependent secretion... XM_017007386.2 59.6% 59.4% 1_1563del;1967_1978del;3593A>G
3 human 8618 CADPS calcium dependent secretion... XM_017007385.2 59.4% 59.3% (many diffs)
4 human 8618 CADPS calcium dependent secretion... XM_011534200.3 59.3% 59.2% 1_1563del;2579_2580insAGAGAATCAAAAGGATGC;3563A>G
5 human 8618 CADPS calcium dependent secretion... XM_017007384.2 59.3% 59.1% (many diffs)
6 human 8618 CADPS calcium dependent secretion... XM_006713378.3 59.1% 59% (many diffs)
7 human 8618 CADPS calcium dependent secretion... XM_011534199.2 59.1% 59% (many diffs)
8 human 8618 CADPS calcium dependent secretion... NM_183394.3 58.8% 58.4% (many diffs)
9 human 8618 CADPS calcium dependent secretion... XM_017007383.2 58.6% 58.1% (many diffs)
10 human 8618 CADPS calcium dependent secretion... XM_017007380.2 58.3% 57.8% (many diffs)
11 human 8618 CADPS calcium dependent secretion... NM_183393.3 58% 57.9% (many diffs)
12 human 8618 CADPS calcium dependent secretion... XM_017007377.2 57.6% 57.5% 1_1563del;3005_3151del;3728A>G
13 human 8618 CADPS calcium dependent secretion... XM_017007375.1 57.4% 57.3% (many diffs)
14 human 8618 CADPS calcium dependent secretion... XM_017007374.2 57.4% 57.2% (many diffs)
15 human 8618 CADPS calcium dependent secretion... NM_003716.4 57.3% 57.2% (many diffs)
16 human 8618 CADPS calcium dependent secretion... XM_017007373.2 57.3% 57.1% (many diffs)
17 human 8618 CADPS calcium dependent secretion... XM_017007371.2 57.2% 57.1% (many diffs)
18 human 8618 CADPS calcium dependent secretion... XM_017007372.1 57.2% 57.1% (many diffs)
19 human 8618 CADPS calcium dependent secretion... XM_024453802.1 57.2% 57% (many diffs)
20 human 8618 CADPS calcium dependent secretion... XM_017007370.2 57.1% 57% (many diffs)
21 human 8618 CADPS calcium dependent secretion... XM_011534194.2 57.1% 56.9% (many diffs)
22 human 8618 CADPS calcium dependent secretion... XM_011534193.2 57.1% 56.9% (many diffs)
23 human 8618 CADPS calcium dependent secretion... XM_011534197.2 57% 56.9% (many diffs)
24 human 8618 CADPS calcium dependent secretion... XM_017007379.2 57% 56.8% (many diffs)
25 human 8618 CADPS calcium dependent secretion... XM_017007378.1 56.9% 56.8% (many diffs)
26 human 8618 CADPS calcium dependent secretion... XM_011534192.2 56.9% 56.8% (many diffs)
27 human 8618 CADPS calcium dependent secretion... XM_017007369.2 56.9% 56.7% (many diffs)
28 human 8618 CADPS calcium dependent secretion... XM_011534203.2 56.8% 56.6% (many diffs)
29 human 8618 CADPS calcium dependent secretion... XM_017007376.2 56.8% 56.7% (many diffs)
30 human 8618 CADPS calcium dependent secretion... XM_011534191.3 56.7% 56.2% (many diffs)
31 human 8618 CADPS calcium dependent secretion... XM_011534196.2 56.6% 56.4% (many diffs)
32 human 8618 CADPS calcium dependent secretion... XM_011534195.2 56.6% 56.5% (many diffs)
33 human 8618 CADPS calcium dependent secretion... XM_017007368.1 56.5% 56% (many diffs)
34 human 8618 CADPS calcium dependent secretion... XM_017007366.2 56.3% 55.9% (many diffs)
35 human 8618 CADPS calcium dependent secretion... XM_017007364.2 56.3% 56.1% (many diffs)
36 human 8618 CADPS calcium dependent secretion... XM_024453801.1 56.2% 56% (many diffs)
37 human 8618 CADPS calcium dependent secretion... XM_024453800.1 56.2% 56% (many diffs)
38 human 8618 CADPS calcium dependent secretion... XM_011534189.2 56.1% 55.7% (many diffs)
39 human 8618 CADPS calcium dependent secretion... XM_024453799.1 56.1% 55.9% (many diffs)
40 human 8618 CADPS calcium dependent secretion... XM_017007363.2 55.2% 55% (many diffs)
41 human 8618 CADPS calcium dependent secretion... XM_017007362.2 55.1% 54.9% (many diffs)
42 human 8618 CADPS calcium dependent secretion... XM_011534182.2 55% 54.9% (many diffs)
43 human 8618 CADPS calcium dependent secretion... XM_017007361.2 55% 54.8% (many diffs)
44 human 8618 CADPS calcium dependent secretion... XM_011534180.2 54.8% 54.6% (many diffs)
45 human 8618 CADPS calcium dependent secretion... XM_011534183.2 54.6% 54.4% (many diffs)
46 human 8618 CADPS calcium dependent secretion... XM_017007360.2 54.3% 54.1% (many diffs)
47 human 8618 CADPS calcium dependent secretion... XM_017007359.2 54.2% 54% (many diffs)
48 human 8618 CADPS calcium dependent secretion... XM_011534178.2 54.2% 53.7% (many diffs)
49 human 8618 CADPS calcium dependent secretion... XM_011534177.2 54.2% 53.9% (many diffs)
50 human 8618 CADPS calcium dependent secretion... XM_017007358.2 54.1% 53.8% (many diffs)
51 human 8618 CADPS calcium dependent secretion... XM_011534202.3 25% 24.9% (many diffs)
52 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316038.1 54.7% 59.6% (many diffs)
53 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518044.3 54.3% 59.2% (many diffs)
54 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518043.3 54.1% 58.9% (many diffs)
55 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518041.3 53.8% 58.3% (many diffs)
56 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316036.1 53.8% 58.5% (many diffs)
57 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316037.1 53.7% 58.1% (many diffs)
58 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316035.1 53.6% 58.3% (many diffs)
59 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518040.3 53.5% 58.1% (many diffs)
60 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316034.1 53.5% 58.2% (many diffs)
61 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518039.3 53.2% 57.8% (many diffs)
62 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316032.1 52.6% 57.1% (many diffs)
63 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518035.3 52.5% 57% (many diffs)
64 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518034.3 52.5% 57.1% (many diffs)
65 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316031.1 52.3% 57% (many diffs)
66 mouse 27062 Cadps Ca2+-dependent secretion ac... NM_001042617.1 52.3% 56.9% (many diffs)
67 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518032.3 52.2% 56.7% (many diffs)
68 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518048.3 52.1% 56.8% (many diffs)
69 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518036.3 52% 56.6% (many diffs)
70 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316033.1 52% 56.6% (many diffs)
71 mouse 27062 Cadps Ca2+-dependent secretion ac... NM_012061.3 51.9% 56.2% (many diffs)
72 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316030.1 51.8% 56.2% (many diffs)
73 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518033.3 51.7% 56.3% (many diffs)
74 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518031.3 51.7% 55.9% (many diffs)
75 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518029.3 51.7% 56.1% (many diffs)
76 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518028.3 51.6% 56% (many diffs)
77 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316029.1 51.5% 55.6% (many diffs)
78 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518026.3 51.5% 55.9% (many diffs)
79 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518025.3 51.4% 55.8% (many diffs)
80 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518027.3 51.4% 55.5% (many diffs)
81 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518024.3 51.3% 55.7% (many diffs)
82 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518030.3 50.6% 54.9% (many diffs)
83 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518042.3 46.7% 48.6% (many diffs)
84 mouse 27062 Cadps Ca2+-dependent secretion ac... XR_001781126.1 35.9% (many diffs)
85 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518045.3 25.1% 26% (many diffs)
86 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518047.3 20% 19.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2397
ORF length:
2328
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAAGCATTCT GGGTATTTAT GGGCCATCGG TAAGAATGTC TGGAAGAGAT
121GGAAGAAAAG GTTTTTTGTA TTGGTGCAGG TCAGTCAGTA CACGTTTGCC ATGTGCAGTT
181ATCGGGAGAA GAAAGCGGAG CCTCAGGAAC TTCTACAATT GGATGGCTAC ACTGTGGATT
241ACACCGACCC CCAGCCAGGT TTGGAGGGTG GCCGAGCCTT CTTCAATGCT GTCAAGGAGG
301GAGACACCGT GATATTTGCC AGTGACGATG AACAAGACCG CATCCTGTGG GTCCAGGCCA
361TGTATCGGGC CACGGGGCAG TCACACAAGC CTGTGCCCCC GACCCAAGTC CAGAAACTCA
421ACGCCAAGGG AGGAAATGTA CCTCAGCTGG ATGCCCCTAT CTCTCAATTT TACGCAGATA
481GAGCTCAAAA ACATGGCATG GATGAATTTA TCTCTTCCAA CCCCTGTAAC TTTGACCACG
541CTTCCCTCTT TGAGATGGTA CAACGCCTTA CTTTGGATCA CAGACTTAAT GATTCCTATT
601CTTGCCTGGG CTGGTTCAGT CCTGGCCAGG TGTTTGTACT AGACGAGTAT TGCGCCCGAA
661ATGGAGTCCG GGGGTGTCAC CGACATCTCT GCTACCTCAG AGACTTGCTT GAACGGGCAG
721AAAATGGCGC CATGATCGAC CCCACCCTTC TTCACTACAG CTTTGCCTTC TGTGCATCCC
781ATGTCCATGG GAACAGGCCT GATGGAATTG GAACTGTGAC TGTTGAAGAA AAGGAACGTT
841TTGAAGAAAT CAAAGAGAGG CTCCGAGTTC TGCTAGAAAA TCAGATTACA CATTTTAGGT
901ATTGCTTTCC ATTTGGTCGA CCTGAAGGTG CTTTGAAAGC TACTCTCTCA CTCTTGGAAA
961GGGTTTTGAT GAAAGATATT GTTACCCCAG TGCCACAAGA GGAGGTAAAA ACAGTTATCC
1021GTAAATGTCT GGAACAGGCT GCGTTAGTCA ACTATTCTCG GCTCTCAGAG TATGCCAAAA
1081TCGAAGAGAA TCAAAAGGAT GCAGAAAATG TAGGCCGGTT AATCACTCCT GCCAAAAAGC
1141TTGAAGATAC AATACGTCTT GCTGAACTAG TCATTGAAGT TCTTCAGCAA AATGAGGAGC
1201ACCACGCAGA GGCCTTTGCG TGGTGGTCAG ATTTAATGGT GGAGCATGCG GAGACGTTCC
1261TGTCACTCTT TGCAGTAGAC ATGGATGCAG CCTTAGAGGT GCAACCTCCA GACACATGGG
1321ACAGTTTTCC ACTATTTCAG CTGCTGAATG ATTTTCTCCG TACTGACTAT AATTTGTGCA
1381ATGGAAAATT TCACAAACAC CTGCAAGACC TGTTTGCCCC ACTTGTTGTT AGATATGTGG
1441ATCTGATGGA GTCCTCAATT GCACAATCCA TTCACAGGGG CTTTGAGCGG GAGTCATGGG
1501AACCAGTCAA TAATGGGTCA GGCACCTCAG AAGATCTGTT TTGGAAACTT GACGCCCTTC
1561AGACCTTCAT TCGGGACCTG CACTGGCCTG AAGAAGAGTT TGGAAAGCAC CTGGAACAAC
1621GGCTGAAGTT GATGGCAAGT GACATGATCG AATCTTGTGT CAAAAGAACC AGGATTGCAT
1681TTGAAGTTAA GCTGCAAAAA ACCAGTCGAT CAACAGATTT TCGAGTCCCA CAGTCAATAT
1741GCACCATGTT TAATGTTATG GTTGATGCCA AAGCTCAATC AACAAAACTT TGCAGCATGG
1801AAATGGGCCA AGAGCATCAA TACCATTCAA AAATAGACGA ACTAATTGAA GAAACTGTTA
1861AAGAAATGAT AACACTCTTG GTTGCAAAGT TCGTTACTAT CTTGGAAGGA GTGCTGGCAA
1921AATTATCCAG ATATGACGAA GGGACTTTGT TTTCTTCTTT TCTGTCATTT ACCGTGAAGG
1981CAGCTTCCAA ATATGTGGAT GTACCTAAAC CCGGGATGGA CGTGGCCGAC GCCTACGTGA
2041CTTTCGTCCG CCATTCTCAG GATGTCCTGC GTGATAAGGT CAATGGGGAG ATGTACATAG
2101AAAGGTTATT TGATCAATGG TACAACAGCT CCATGAACGT GATCTGCACC TGGTTGACGG
2161ACCGGATGGA CTTACAGCTT CATATTTATC AGTTGAAAAC ACTAATTAGG ATGGTAAAGA
2221AAACCTACAG AGATTTCCGA TTGCAAGGGG TCCTGGACTC CACCTTAAAC AGCAAGACCT
2281ATGAAACGAT CCGGAACCGT CTCACTGTGG AGGAAGCCAC AGCATCAGTG AGTGAAGGTG
2341GGGGACTGCA GGGCATCAGC ATGAAGGACA GCGATGAGGA AGACGAAGAA GACGATTTGC
2401CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
2461aac

Download FASTA (ORF) (Full)

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