Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11286
- Subject:
- XM_006518025.3
- Aligned Length:
- 4134
- Identities:
- 2128
- Gaps:
- 1806
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCTGGACCCTTCGTCCAGCGAAGAGGAGTCAGATGAGATCCTGGAAGAGGAGAGGGGCAAGGATGTGCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCGGCCGCGTCTGGAGCGCGCCTGTCTCCCAGCCGCACCAGCGAGGGCTCGGCAGGCAGCGCCGGGATGGGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCAGTGGCGCCGGGGCCGGGGTGGGCGCCGGCGGCGGTGGGGGTAGCGGCGCGAGCAGCGGCGGCGGGGCCGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGCTGCAGCCCAGCAGCCGCGCCGGCGGCGGCCGGCCTTCCAGCCCTAGCCCGTCGGTGGTGAGCGAGAAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGGAAGAGTTGGAGAGGCTGCAGAAGGAGGAGGAAGAGAGGAAGAAGAGGCTGCAGCTGTACGTGTTCGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCGCTGCATCGCCTACCCCTTCAACGCCAAGCAGCCCACCGACATGGCTCGGCGGCAGCAGAAGATCAGCAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGCAGCTACAGACTGTCAAAGACCGGTTCCAGGCTTTTCTCAATGGGGAGACCCAAATCGTAGCTGATGAAGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTTATGAATGCTGTCCAGAGCTACTATGAGGTGTTTCTCAAGAGTGACCGTGTGGCCCGCATGGTGCAGAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGGCTGCTCAGCCAATGACTCTCGGGAGGTCTTCAAGAAACACATCGAGAAGAGGGTGCGCAGCCTACCTGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTGACGGCCTCAGCAAGGAGACAGTGCTAAGCTCTTGGATGGCCAAGTTTGATGCCATCTACCGTGGTGAGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGACCCCAGGAAGCAGCAAGCCCGGATGACAGCCAGTGCAGCTTCTGAGTTGATTCTGAGCAAGGAACAGCTCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGAGATGTTTCAGAACATTCTTGGGATCAAGAAGTTTGAACATCAACTCCTGTATAATGCCTGTCAGCTGGAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATCCAGATGAGCAGGCAGCCCAGATCAGACGAGAGCTGGATGGACGTCTCCAAATGGCAGATCAAATAGCCAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAACGCAAATTTCCTAAGTTCGTATCCAAAGAAATGGAAAACATGTACATTGAGGAGCTGAAGTCCTCCGTCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACCTGCTCATGGCCAACTTGGAGAGCATGCCGGTGTCCAAGGGTGGAGAGTTCAAGCTACAGAAACTGAAACGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGTCACAATGCTTCCATCATTGACATGGGTGAGGAGAGTGAGAACCAGCTTTCTAAGTCAGATGTCCTGCTGTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTCTCCTTGGAGGTGGTGATCATGGAAGTCCAAGGCCTTAAGTCCTTGGCTCCAAATCGAATTGTATACTGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAATGGAGGTGGAGGGTGGAGAGAAACTTCAGACAGATCAAGCAGAGGCTTCTAAACCAACCTGGGGCACTCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGCGACTTCTCCACAACCCATGCGCTGCCAGCTGTTAAAGTAAAACTATTCACAGAGAGCACTGGTGTCCTGGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTTGGAAGACAAGGAACTCGGGCGGGTGATCCTCCATCCCACCCCAAATAGCCCCAAACAATCTGAGTGGCACA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAATGACAGTCTCCAAAAACTGCCCCGATCAAGACCTCAAAATCAAACTTGCTGTCCGAATGGATAAGCCTCAA 1554
Query 1 ---ATGAAGCATTCTGGGTATTTATGGGCCATCGGTAAGAATGTCTGGAAGAGATGGAAGAAAAGGTTTTTTGT 71
||||||||.||||||||.||||||.||||.|||||||||||.||||||||.||||||||.|||||.|||||
Sbjct 1555 AACATGAAGCACTCTGGGTACTTATGGACCATTGGTAAGAATGTGTGGAAGAGGTGGAAGAAGAGGTTCTTTGT 1628
Query 72 ATTGGTGCAGGTCAGTCAGTACACGTTTGCCATGTGCAGTTATCGGGAGAAGAAAGCGGAGCCTCAGGAACTTC 145
.||||||||||||||.||||||||.||||||||||||||.|||||.||.|||||.||.||||||||||||||.|
Sbjct 1629 GTTGGTGCAGGTCAGCCAGTACACTTTTGCCATGTGCAGCTATCGAGAAAAGAAGGCAGAGCCTCAGGAACTCC 1702
Query 146 TACAATTGGATGGCTACACTGTGGATTACACCGACCCCCAGCCAGGTTTGGAGGGTGGCCGAGCCTTCTTCAAT 219
||||..||||.||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1703 TACAGCTGGACGGCTACACCGTGGATTACACCGACCCTCAGCCAGGTTTGGAGGGTGGCCGAGCCTTCTTCAAT 1776
Query 220 GCTGTCAAGGAGGGAGACACCGTGATATTTGCCAGTGACGATGAACAAGACCGCATCCTGTGGGTCCAGGCCAT 293
||.|||||.||.||||||||.|||||||||||.|||||.|||||||||||.||.||..||||||||||.||.||
Sbjct 1777 GCAGTCAAAGAAGGAGACACGGTGATATTTGCAAGTGATGATGAACAAGATCGAATTTTGTGGGTCCAAGCTAT 1850
Query 294 GTATCGGGCCACGGGGCAGTCACACAAGCCTGTGCCCCCGACCCAAGTCCAGAAACTCAACGCCAAGGGAGGAA 367
|||..|||||||.||.|||||.|||||.|||||.|||||.|||||.||.|||||.||||||||||||||.||||
Sbjct 1851 GTACAGGGCCACTGGCCAGTCGCACAAACCTGTTCCCCCTACCCAGGTGCAGAAGCTCAACGCCAAGGGCGGAA 1924
Query 368 ATGTACCTCAGCTGGATGCCCCTATCTCTCAATTTT------------ACGCAGATAGAGCTCAAAAACATGGC 429
||||.|||||||||||||||||.|||||.||||||| ||||||||||||||||.||.||||||
Sbjct 1925 ATGTGCCTCAGCTGGATGCCCCCATCTCACAATTTTCTGGACTGAAGGACGCAGATAGAGCTCAGAAGCATGGC 1998
Query 430 ATGGATGAATTTATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTACAACGCCTTAC 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||
Sbjct 1999 ATGGATGAATTTATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTGCAGCGGCTGAC 2072
Query 504 TTTGGATCACAGACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTACTAGACG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..||||.|
Sbjct 2073 TTTGGATCACAGACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTGTTAGATG 2146
Query 578 AGTATTGCGCCCGAAATGGAGTCCGGGGGTGTCACCGACATCTCTGCTACCTCAGAGACTTGCTTGAACGGGCA 651
|||||||||||.|||||||||||||.||.||||||||.||||||||||||||.|||||||||||.|||||.|||
Sbjct 2147 AGTATTGCGCCAGAAATGGAGTCCGAGGATGTCACCGGCATCTCTGCTACCTTAGAGACTTGCTGGAACGAGCA 2220
Query 652 GAAAATGGCGCCATGATCGACCCCACCCTTCTTCACTACAGCTTTGCCTTCTGTGCATCCCATGTCCATGGGAA 725
|||||||||||.|||||.||||||||.||||||||||||||||||||||||||.||.||||||||||||||.||
Sbjct 2221 GAAAATGGCGCGATGATTGACCCCACGCTTCTTCACTACAGCTTTGCCTTCTGCGCGTCCCATGTCCATGGTAA 2294
Query 726 CAGGCCTGATGGAATTGGAACTGTGACTGTTGAAGAAAAGGAACGTTTTGAAGAAATCAAAGAGAGGCTCCGAG 799
|||||||||||||||.|||||||||||||||||||||||.|||||.||||||||||||||||||||.|||||||
Sbjct 2295 CAGGCCTGATGGAATCGGAACTGTGACTGTTGAAGAAAAAGAACGCTTTGAAGAAATCAAAGAGAGACTCCGAG 2368
Query 800 TTCTGCTAGAAAATCAGATTACACATTTTAGGTATTGCTTTCCATTTGGTCGACCTGAAGGTGCTTTGAAAGCT 873
|||||||.||||||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TTCTGCTGGAAAATCAAATTACACATTTCAGGTACTGCTTTCCATTTGGTCGACCTGAAGGTGCTTTGAAAGCT 2442
Query 874 ACTCTCTCACTCTTGGAAAGGGTTTTGATGAAAGATATTGTTACCCCAGTGCCACAAGAGGAGGTAAAAACAGT 947
||||||||||||||||||.||||||||||||||||||||||.||.|||||.||||||||.|||||.|||||.||
Sbjct 2443 ACTCTCTCACTCTTGGAACGGGTTTTGATGAAAGATATTGTCACTCCAGTACCACAAGAAGAGGTCAAAACTGT 2516
Query 948 TATCCGTAAATGTCTGGAACAGGCTGCGTTAGTCAACTATTCTCGGCTCTCAGAGTATGCCAAAATCGAAG--- 1018
.|||||||||||.||.||.||||||||..||||||||||.||.||.||.||.||||||||||||||.||||
Sbjct 2517 CATCCGTAAATGCCTAGAGCAGGCTGCTCTAGTCAACTACTCACGCCTATCTGAGTATGCCAAAATTGAAGGGA 2590
Query 1019 ------------------------------------------------------------------AGAATCAA 1026
||||||||
Sbjct 2591 AAAAGAGAGAAATGTATGAGCATCCTGTCTTCTGCTTGGCCTCCCAAGTGATGGATTTAACCATTCAGAATCAA 2664
Query 1027 AAGGATGCAGAAAATGTAGGCCGGTTAATCACTCCTGCCAAAAAGCTTGAAGATACAATACGTCTTGCTGAACT 1100
|||||||||||||||||||||||.|||||||||||.|||||||||||.|||||.|||||.||||||||||||||
Sbjct 2665 AAGGATGCAGAAAATGTAGGCCGCTTAATCACTCCCGCCAAAAAGCTCGAAGACACAATCCGTCTTGCTGAACT 2738
Query 1101 AGTCATTGAAGTTCTTCAGCAAAATGAGGAGCACCACGC---------------------AGAGGCCTTTGCGT 1153
||||||.|||||.||.||.|||||.|||||||||||||| |||.||||||||||
Sbjct 2739 AGTCATCGAAGTACTGCAACAAAACGAGGAGCACCACGCCGAGCCACATGTTGATAAAGGAGAAGCCTTTGCGT 2812
Query 1154 GGTGGTCAGATTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCTTTGCAGTAGACATGGATGCAGCCTTA 1227
||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 2813 GGTGGTCAGACTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCTTTGCAGTGGACATGGATGCAGCCTTA 2886
Query 1228 GAGGTGCAACCTCCAGACACATGGGACAGTTTTCCACTATTTCAGCTGCTGAATGATTTTCTCCGTACTGACTA 1301
|||||||||||.||||||||.|||||||||||.|||||.||.||||||||||||||.|||||||||||.|||||
Sbjct 2887 GAGGTGCAACCCCCAGACACGTGGGACAGTTTCCCACTCTTCCAGCTGCTGAATGACTTTCTCCGTACAGACTA 2960
Query 1302 TAATTTGTGCAATGGAAAATTTCACAAACACCTGCAAGACCTGTTTGCCCCACTTGTTGTTAGATATGTGGATC 1375
||||||||||||||||||.|||||||||||||||||.||||||||.||||||||||||||||||||||||||||
Sbjct 2961 TAATTTGTGCAATGGAAAGTTTCACAAACACCTGCAGGACCTGTTCGCCCCACTTGTTGTTAGATATGTGGATC 3034
Query 1376 TGATGGAGTCCTCAATTGCACAATCCATTCACAGGGGCTTTGAGCGGGAGTCATGGGAACCAGTCA-------- 1441
|||||||||||||.|||||||||||.||.|||||||||||||||||||||||||||||.|||||||
Sbjct 3035 TGATGGAGTCCTCCATTGCACAATCTATCCACAGGGGCTTTGAGCGGGAGTCATGGGAGCCAGTCAAGAGTTTA 3108
Query 1442 -------------------------------------------------------------------------- 1441
Sbjct 3109 ACCAGTAACCTACCCAATGTGAACCTACCCAATGTGAACCTACCCAAAGTACCAAATCTACCAGTTAACATCCC 3182
Query 1442 -----------------------------------------------------------------ATAATGGGT 1450
|||||||.|
Sbjct 3183 TCTAGGCATCCCACAGATGCCCACTTTTTCGGCACCGTCATGGATGGCTGCTATATATGATGCTGATAATGGAT 3256
Query 1451 CAGGCACCTCAGAAGATCTGTTTTGGAAACTTGACGCCCTTCAGACCTTCATTCGGGACCTGCACTGGCCTGAA 1524
||||.||.|||||||||.||||.|||||||||||.|||||||||||.|||||.||.|||||.|||||||||||.
Sbjct 3257 CAGGTACATCAGAAGATTTGTTCTGGAAACTTGATGCCCTTCAGACTTTCATCCGTGACCTACACTGGCCTGAG 3330
Query 1525 GAAGAGTTTGGAAAGCACCTGGAACAACGGCTGAAGTTGATGGCAAGTGACATGATCGAATCTTGTGTCAAAAG 1598
||||||||||||||.|||.|.||.||.|||||.||..|||||||||||||||||||.||.||.||.||||||||
Sbjct 3331 GAAGAGTTTGGAAAACACTTAGAGCAGCGGCTAAAACTGATGGCAAGTGACATGATTGAGTCCTGCGTCAAAAG 3404
Query 1599 AACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAACAGATTTTCGAGTCCCACAGTCAATAT 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 AACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAACAGATTTTCGAGTCCCACAGTCAATAT 3478
Query 1673 GCACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAACTTTGCAGCATGGAAATGGGCCAAGAG 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 GCACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAACTTTGCAGCATGGAAATGGGCCAAGAG 3552
Query 1747 CATCAATACCATTCAAAAATAGACGAACTAATTGAAGAAACTGTTAAAGAAATGATAACACTCTTGGTTGCAAA 1820
|||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||.|||||.|||||
Sbjct 3553 CATCAATACCATTCAAAAATAGATGAACTAATTGAAGAAACCGTTAAAGAAATGATCACACTTTTGGTGGCAAA 3626
Query 1821 GTTCGTTACTATCTTGGAAGGAGTGCTGGCAAAATTATCCAGATATGACGAAGGGACTTTGTTTTCTTCTTTTC 1894
|||.||.|||||.||||||||.||.||||||||.|||||||||||||||||.|||||||||||||||||.||||
Sbjct 3627 GTTTGTAACTATATTGGAAGGCGTACTGGCAAAGTTATCCAGATATGACGAGGGGACTTTGTTTTCTTCGTTTC 3700
Query 1895 TGTCATTTACCGTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAACCCGGGATGGACGTGGCCGACGCCTAC 1968
|||||||.||.|||||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||
Sbjct 3701 TGTCATTCACGGTGAAGGCAGCTTCCAAGTATGTGGACGTGCCTAAACCCGGGATGGACGTGGCCGACGCCTAC 3774
Query 1969 GTGACTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGTCAATGGGGAGATGTACATAGAAAGGTTATT 2042
||||||||||||||||||||||||||||||||.||||||||||||||||.|||||||||.||||||||||||||
Sbjct 3775 GTGACTTTCGTCCGCCATTCTCAGGATGTCCTTCGTGATAAGGTCAATGAGGAGATGTATATAGAAAGGTTATT 3848
Query 2043 TGATCAATGGTACAACAGCTCCATGAACGTGATCTGCACCTGGTTGACGGACCGGATGGACTTACAGCTTCATA 2116
||||||||||||||||||||||||||||.|.||||||||.|||.||||.|||.||||||||.|.|||||.||.|
Sbjct 3849 TGATCAATGGTACAACAGCTCCATGAACATCATCTGCACGTGGCTGACCGACAGGATGGACCTGCAGCTCCACA 3922
Query 2117 TTTATCAGTTGAAAACACTAATTAGGATGGTAAAGAAAACCTACAGAGATTTCCGATTGCAAGGGGTCCTGGAC 2190
||||.|||.|||||||.||.||.||||||||||||||||||||.|||||||||||||||||||||||||||||.
Sbjct 3923 TTTACCAGCTGAAAACCCTGATCAGGATGGTAAAGAAAACCTATAGAGATTTCCGATTGCAAGGGGTCCTGGAT 3996
Query 2191 TCCACCTTAAACAGCAAGACCTATGAAACGATCCGGAACCGTCTCACTGTGGAGGAAGCCACAGCATCAGTGAG 2264
||||||||||||||||||||||||||.||.|||||.|||||||||||||||||||||||.|||||.||||||||
Sbjct 3997 TCCACCTTAAACAGCAAGACCTATGAGACCATCCGAAACCGTCTCACTGTGGAGGAAGCTACAGCGTCAGTGAG 4070
Query 2265 TGAAGGTGGGGGACTGCAGGGCATCAGCATGAAGGACAGCGATGAGGAAGACGAAGAAGACGAT 2328
|||.||||||||..|.||.||.|||||||||||||||||.|||||||||||.||||||||.|||
Sbjct 4071 TGAGGGTGGGGGCTTACAAGGTATCAGCATGAAGGACAGTGATGAGGAAGATGAAGAAGATGAT 4134
