Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11286
- Subject:
- XM_006518041.3
- Aligned Length:
- 3939
- Identities:
- 2122
- Gaps:
- 1614
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCTGGACCCTTCGTCCAGCGAAGAGGAGTCAGATGAGATCCTGGAAGAGGAGAGGGGCAAGGATGTGCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCGGCCGCGTCTGGAGCGCGCCTGTCTCCCAGCCGCACCAGCGAGGGCTCGGCAGGCAGCGCCGGGATGGGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCAGTGGCGCCGGGGCCGGGGTGGGCGCCGGCGGCGGTGGGGGTAGCGGCGCGAGCAGCGGCGGCGGGGCCGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGCTGCAGCCCAGCAGCCGCGCCGGCGGCGGCCGGCCTTCCAGCCCTAGCCCGTCGGTGGTGAGCGAGAAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGGAAGAGTTGGAGAGGCTGCAGAAGGAGGAGGAAGAGAGGAAGAAGAGGCTGCAGCTGTACGTGTTCGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCGCTGCATCGCCTACCCCTTCAACGCCAAGCAGCCCACCGACATGGCTCGGCGGCAGCAGAAGATCAGCAAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGCAGCTACAGACTGTCAAAGACCGGTTCCAGGCTTTTCTCAATGGGGAGACCCAAATCGTAGCTGATGAAGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTTATGAATGCTGTCCAGAGCTACTATGAGGTGTTTCTCAAGAGTGACCGTGTGGCCCGCATGGTGCAGAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGGCTGCTCAGCCAATGACTCTCGGGAGGTCTTCAAGAAACACATCGAGAAGAGGGTGCGCAGCCTACCTGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTGACGGCCTCAGCAAGGAGACAGTGCTAAGCTCTTGGATGGCCAAGTTTGATGCCATCTACCGTGGTGAGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGACCCCAGGAAGCAGCAAGCCCGGATGACAGCCAGTGCAGCTTCTGAGTTGATTCTGAGCAAGGAACAGCTCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGAGATGTTTCAGAACATTCTTGGGATCAAGAAGTTTGAACATCAACTCCTGTATAATGCCTGTCAGCTGGAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATCCAGATGAGCAGGCAGCCCAGATCAGACGAGAGCTGGATGGACGTCTCCAAATGGCAGATCAAATAGCCAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAACGCAAATTTCCTAAGTTCGTATCCAAAGAAATGGAAAACATGTACATTGAGGAGCTGAAGTCCTCCGTCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACCTGCTCATGGCCAACTTGGAGAGCATGCCGGTGTCCAAGGGTGGAGAGTTCAAGCTACAGAAACTGAAACGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGTCACAATGCTTCCATCATTGACATGGGTGAGGAGAGTGAGAACCAGCTTTCTAAGTCAGATGTCCTGCTGTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTCTCCTTGGAGGTGGTGATCATGGAAGTCCAAGGCCTTAAGTCCTTGGCTCCAAATCGAATTGTATACTGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAATGGAGGTGGAGGGTGGAGAGAAACTTCAGACAGATCAAGCAGAGGCTTCTAAACCAACCTGGGGCACTCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGCGACTTCTCCACAACCCATGCGCTGCCAGCTGTTAAAGTAAAACTATTCACAGAGAGCACTGGTGTCCTGGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTTGGAAGACAAGGAACTCGGGCGGGTGATCCTCCATCCCACCCCAAATAGCCCCAAACAATCTGAGTGGCACA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAATGACAGTCTCCAAAAACTGCCCCGATCAAGACCTCAAAATCAAACTTGCTGTCCGAATGGATAAGCCTCAA 1554
Query 1 ---ATGAAGCATTCTGGGTATTTATGGGCCATCGGTAAGAATGTCTGGAAGAGATGGAAGAAAAGGTTTTTTGT 71
||||||||.||||||||.||||||.||||.|||||||||||.||||||||.||||||||.|||||.|||||
Sbjct 1555 AACATGAAGCACTCTGGGTACTTATGGACCATTGGTAAGAATGTGTGGAAGAGGTGGAAGAAGAGGTTCTTTGT 1628
Query 72 ATTGGTGCAGGTCAGTCAGTACACGTTTGCCATGTGCAGTTATCGGGAGAAGAAAGCGGAGCCTCAGGAACTTC 145
.||||||||||||||.||||||||.||||||||||||||.|||||.||.|||||.||.||||||||||||||.|
Sbjct 1629 GTTGGTGCAGGTCAGCCAGTACACTTTTGCCATGTGCAGCTATCGAGAAAAGAAGGCAGAGCCTCAGGAACTCC 1702
Query 146 TACAATTGGATGGCTACACTGTGGATTACACCGACCCCCAGCCAGGTTTGGAGGGTGGCCGAGCCTTCTTCAAT 219
||||..||||.||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1703 TACAGCTGGACGGCTACACCGTGGATTACACCGACCCTCAGCCAGGTTTGGAGGGTGGCCGAGCCTTCTTCAAT 1776
Query 220 GCTGTCAAGGAGGGAGACACCGTGATATTTGCCAGTGACGATGAACAAGACCGCATCCTGTGGGTCCAGGCCAT 293
||.|||||.||.||||||||.|||||||||||.|||||.|||||||||||.||.||..||||||||||.||.||
Sbjct 1777 GCAGTCAAAGAAGGAGACACGGTGATATTTGCAAGTGATGATGAACAAGATCGAATTTTGTGGGTCCAAGCTAT 1850
Query 294 GTATCGGGCCACGGGGCAGTCACACAAGCCTGTGCCCCCGACCCAAGTCCAGAAACTCAACGCCAAGGGAGGAA 367
|||..|||||||.||.|||||.|||||.|||||.|||||.|||||.||.|||||.||||||||||||||.||||
Sbjct 1851 GTACAGGGCCACTGGCCAGTCGCACAAACCTGTTCCCCCTACCCAGGTGCAGAAGCTCAACGCCAAGGGCGGAA 1924
Query 368 ATGTACCTCAGCTGGATGCCCCTATCTCTCAATTTTACGCAGATAGAGCTCAAAAACATGGCATGGATGAATTT 441
||||.|||||||||||||||||.|||||.|||||||||||||||||||||||.||.||||||||||||||||||
Sbjct 1925 ATGTGCCTCAGCTGGATGCCCCCATCTCACAATTTTACGCAGATAGAGCTCAGAAGCATGGCATGGATGAATTT 1998
Query 442 ATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTACAACGCCTTACTTTGGATCACAG 515
||||||||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||||||||||||||
Sbjct 1999 ATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTGCAGCGGCTGACTTTGGATCACAG 2072
Query 516 ACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTACTAGACGAGTATTGCGCCC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||..||||.||||||||||||.
Sbjct 2073 ACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTGTTAGATGAGTATTGCGCCA 2146
Query 590 GAAATGGAGTCCGGGGGTGTCACCGACATCTCTGCTACCTCAGAGACTTGCTTGAACGGGCAGAAAATGGCGCC 663
|||||||||||||.||.||||||||.||||||||||||||.|||||||||||.|||||.||||||||||||||.
Sbjct 2147 GAAATGGAGTCCGAGGATGTCACCGGCATCTCTGCTACCTTAGAGACTTGCTGGAACGAGCAGAAAATGGCGCG 2220
Query 664 ATGATCGACCCCACCCTTCTTCACTACAGCTTTGCCTTCTGTGCATCCCATGTCCATGGGAACAGGCCTGATGG 737
|||||.||||||||.||||||||||||||||||||||||||.||.||||||||||||||.||||||||||||||
Sbjct 2221 ATGATTGACCCCACGCTTCTTCACTACAGCTTTGCCTTCTGCGCGTCCCATGTCCATGGTAACAGGCCTGATGG 2294
Query 738 AATTGGAACTGTGACTGTTGAAGAAAAGGAACGTTTTGAAGAAATCAAAGAGAGGCTCCGAGTTCTGCTAGAAA 811
|||.|||||||||||||||||||||||.|||||.||||||||||||||||||||.||||||||||||||.||||
Sbjct 2295 AATCGGAACTGTGACTGTTGAAGAAAAAGAACGCTTTGAAGAAATCAAAGAGAGACTCCGAGTTCTGCTGGAAA 2368
Query 812 ATCAGATTACACATTTTAGGTATTGCTTTCCATTTGGTCGACCTGAAGGTGCTTTGAAAGCTACTCTCTCACTC 885
||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 ATCAAATTACACATTTCAGGTACTGCTTTCCATTTGGTCGACCTGAAGGTGCTTTGAAAGCTACTCTCTCACTC 2442
Query 886 TTGGAAAGGGTTTTGATGAAAGATATTGTTACCCCAGTGCCACAAGAGGAGGTAAAAACAGTTATCCGTAAATG 959
||||||.||||||||||||||||||||||.||.|||||.||||||||.|||||.|||||.||.|||||||||||
Sbjct 2443 TTGGAACGGGTTTTGATGAAAGATATTGTCACTCCAGTACCACAAGAAGAGGTCAAAACTGTCATCCGTAAATG 2516
Query 960 TCTGGAACAGGCTGCGTTAGTCAACTATTCTCGGCTCTCAGAGTATGCCAAAATCGAAGAGAATCAAAAG---- 1029
.||.||.||||||||..||||||||||.||.||.||.||.||||||||||||||.||||.|| |||||
Sbjct 2517 CCTAGAGCAGGCTGCTCTAGTCAACTACTCACGCCTATCTGAGTATGCCAAAATTGAAGGGA---AAAAGAGAG 2587
Query 1030 ----------------------------------------GATGCA----------GAAAATGTAGGCCGGTTA 1053
||||.| .|||||||||||||.|||
Sbjct 2588 AAATGTATGAGCATCCTGTCTTCTGCTTGGCCTCCCAAGTGATGGATTTAACCATTCAAAATGTAGGCCGCTTA 2661
Query 1054 ATCACTCCTGCCAAAAAGCTTGAAGATACAATACGTCTTGCTGAACTAGTCATTGAAGTTCTTCAGCAAAATGA 1127
||||||||.|||||||||||.|||||.|||||.||||||||||||||||||||.|||||.||.||.|||||.||
Sbjct 2662 ATCACTCCCGCCAAAAAGCTCGAAGACACAATCCGTCTTGCTGAACTAGTCATCGAAGTACTGCAACAAAACGA 2735
Query 1128 GGAGCACCACGCAGAGGCCTTTGCGTGGTGGTCAGATTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCT 1201
||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 2736 GGAGCACCACGCCGAGGCCTTTGCGTGGTGGTCAGACTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCT 2809
Query 1202 TTGCAGTAGACATGGATGCAGCCTTAGAGGTGCAACCTCCAGACACATGGGACAGTTTTCCACTATTTCAGCTG 1275
|||||||.|||||||||||||||||||||||||||||.||||||||.|||||||||||.|||||.||.||||||
Sbjct 2810 TTGCAGTGGACATGGATGCAGCCTTAGAGGTGCAACCCCCAGACACGTGGGACAGTTTCCCACTCTTCCAGCTG 2883
Query 1276 CTGAATGATTTTCTCCGTACTGACTATAATTTGTGCAATGGAAAATTTCACAAACACCTGCAAGACCTGTTTGC 1349
||||||||.|||||||||||.|||||||||||||||||||||||.|||||||||||||||||.||||||||.||
Sbjct 2884 CTGAATGACTTTCTCCGTACAGACTATAATTTGTGCAATGGAAAGTTTCACAAACACCTGCAGGACCTGTTCGC 2957
Query 1350 CCCACTTGTTGTTAGATATGTGGATCTGATGGAGTCCTCAATTGCACAATCCATTCACAGGGGCTTTGAGCGGG 1423
|||||||||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||
Sbjct 2958 CCCACTTGTTGTTAGATATGTGGATCTGATGGAGTCCTCCATTGCACAATCTATCCACAGGGGCTTTGAGCGGG 3031
Query 1424 AGTCATGGGAACCAGTCAATAATGGGTCAGGCACCTCAGAAGATCTGTTTTGGAAACTTGACGCCCTTCAGACC 1497
||||||||||.||||||||||||||.|||||.||.|||||||||.||||.|||||||||||.|||||||||||.
Sbjct 3032 AGTCATGGGAGCCAGTCAATAATGGATCAGGTACATCAGAAGATTTGTTCTGGAAACTTGATGCCCTTCAGACT 3105
Query 1498 TTCATTCGGGACCTGCACTGGCCTGAAGAAGAGTTTGGAAAGCACCTGGAACAACGGCTGAAGTTGATGGCAAG 1571
|||||.||.|||||.|||||||||||.||||||||||||||.|||.|.||.||.|||||.||..||||||||||
Sbjct 3106 TTCATCCGTGACCTACACTGGCCTGAGGAAGAGTTTGGAAAACACTTAGAGCAGCGGCTAAAACTGATGGCAAG 3179
Query 1572 TGACATGATCGAATCTTGTGTCAAAAGAACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAA 1645
|||||||||.||.||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3180 TGACATGATTGAGTCCTGCGTCAAAAGAACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAA 3253
Query 1646 CAGATTTTCGAGTCCCACAGTCAATATGCACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAA 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3254 CAGATTTTCGAGTCCCACAGTCAATATGCACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAA 3327
Query 1720 CTTTGCAGCATGGAAATGGGCCAAGAGCATCAATACCATTCAAAAATAGACGAACTAATTGAAGAAACTGTTAA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||
Sbjct 3328 CTTTGCAGCATGGAAATGGGCCAAGAGCATCAATACCATTCAAAAATAGATGAACTAATTGAAGAAACCGTTAA 3401
Query 1794 AGAAATGATAACACTCTTGGTTGCAAAGTTCGTTACTATCTTGGAAGGAGTGCTGGCAAAATTATCCAGATATG 1867
|||||||||.|||||.|||||.||||||||.||.|||||.||||||||.||.||||||||.|||||||||||||
Sbjct 3402 AGAAATGATCACACTTTTGGTGGCAAAGTTTGTAACTATATTGGAAGGCGTACTGGCAAAGTTATCCAGATATG 3475
Query 1868 ACGAAGGGACTTTGTTTTCTTCTTTTCTGTCATTTACCGTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAA 1941
||||.|||||||||||||||||.|||||||||||.||.|||||||||||||||||.||||||||.||.||||||
Sbjct 3476 ACGAGGGGACTTTGTTTTCTTCGTTTCTGTCATTCACGGTGAAGGCAGCTTCCAAGTATGTGGACGTGCCTAAA 3549
Query 1942 CCCGGGATGGACGTGGCCGACGCCTACGTGACTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGTCAA 2015
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 3550 CCCGGGATGGACGTGGCCGACGCCTACGTGACTTTCGTCCGCCATTCTCAGGATGTCCTTCGTGATAAGGTCAA 3623
Query 2016 TGGGGAGATGTACATAGAAAGGTTATTTGATCAATGGTACAACAGCTCCATGAACGTGATCTGCACCTGGTTGA 2089
||.|||||||||.||||||||||||||||||||||||||||||||||||||||||.|.||||||||.|||.|||
Sbjct 3624 TGAGGAGATGTATATAGAAAGGTTATTTGATCAATGGTACAACAGCTCCATGAACATCATCTGCACGTGGCTGA 3697
Query 2090 CGGACCGGATGGACTTACAGCTTCATATTTATCAGTTGAAAACACTAATTAGGATGGTAAAGAAAACCTACAGA 2163
|.|||.||||||||.|.|||||.||.|||||.|||.|||||||.||.||.||||||||||||||||||||.|||
Sbjct 3698 CCGACAGGATGGACCTGCAGCTCCACATTTACCAGCTGAAAACCCTGATCAGGATGGTAAAGAAAACCTATAGA 3771
Query 2164 GATTTCCGATTGCAAGGGGTCCTGGACTCCACCTTAAACAGCAAGACCTATGAAACGATCCGGAACCGTCTCAC 2237
||||||||||||||||||||||||||.||||||||||||||||||||||||||.||.|||||.|||||||||||
Sbjct 3772 GATTTCCGATTGCAAGGGGTCCTGGATTCCACCTTAAACAGCAAGACCTATGAGACCATCCGAAACCGTCTCAC 3845
Query 2238 TGTGGAGGAAGCCACAGCATCAGTGAGTGAAGGTGGGGGACTGCAGGGCATCAGCATGAAGGACAGCGATGAGG 2311
||||||||||||.|||||.|||||||||||.||||||||..|.||.||.|||||||||||||||||.|||||||
Sbjct 3846 TGTGGAGGAAGCTACAGCGTCAGTGAGTGAGGGTGGGGGCTTACAAGGTATCAGCATGAAGGACAGTGATGAGG 3919
Query 2312 AAGACGAAGAAGACGAT 2328
||||.||||||||.|||
Sbjct 3920 AAGATGAAGAAGATGAT 3936
