Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11305
Subject:
NM_001177599.1
Aligned Length:
1347
Identities:
1105
Gaps:
222

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGTCCCCCGTAGCAGCGCAGGCCGGGAAGCTTCTGCGAGCCCTAGCGCTGCGGCCCCGCTTCCTGGCGGC  74

Query    1  ----------------------------------------------------------------------ATGT  4
                                                                                  ||||
Sbjct   75  CGGGTCCCAGGCAGTTCAATTAACCTCCAGAAGATGGCTGAACCTGCAGGAATACCAGAGCAAGAAACTGATGT  148

Query    5  CTGACAACGGAGTGAGAGTTCAAAGATTCTTTGTAGCAGACACTGCAAATGAAGCTCTCGAGGCTGCTAAGAGA  78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTGACAACGGAGTGAGAGTTCAAAGATTCTTTGTAGCAGACACTGCAAATGAAGCTCTCGAGGCTGCTAAGAGA  222

Query   79  CTAAATGCAAAAGAAATTGTTTTAAAAGCCCAGATCTTAGCTGGAGGAAGAGGAAAAGGTGTCTTCAATAGTGG  152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTAAATGCAAAAGAAATTGTTTTAAAAGCCCAGATCTTAGCTGGAGGAAGAGGAAAAGGTGTCTTCAATAGTGG  296

Query  153  TTTGAAAGGAGGTGTTCATTTAACAAAAGACCCTAATGTTGTGGGACAGCTGGCTAAACAGATGATTGGGTACA  226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TTTGAAAGGAGGTGTTCATTTAACAAAAGACCCTAATGTTGTGGGACAGCTGGCTAAACAGATGATTGGGTACA  370

Query  227  ATCTAGCGACAAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAGGTGATGGTTGCTGAAGCCTTGGATATT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATCTAGCGACAAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAGGTGATGGTTGCTGAAGCCTTGGATATT  444

Query  301  TCCAGAGAAACCTACCTGGCAATTCTGATGGACCGGTCCTGCAATGGCCCCGTGCTGGTGGGCAGCCCCCAGGG  374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCCAGAGAAACCTACCTGGCAATTCTGATGGACCGGTCCTGCAATGGCCCCGTGCTGGTGGGCAGCCCCCAGGG  518

Query  375  GGGCGTCGACATTGAAGAGGTGGCTGCTTCAAACCCGGAGCTCATTTTTAAGGAGCAAATTGACATTTTTGAAG  448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGGCGTCGACATTGAAGAGGTGGCTGCTTCAAACCCGGAGCTCATTTTTAAGGAGCAAATTGACATTTTTGAAG  592

Query  449  GAATAAAGGACAGCCAAGCTCAGCGGATGGCCGAAAATCTAGGCTTCGTTGGGCCTTTGAAAAGCCAGGCTGCA  522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GAATAAAGGACAGCCAAGCTCAGCGGATGGCCGAAAATCTAGGCTTCGTTGGGCCTTTGAAAAGCCAGGCTGCA  666

Query  523  GATCAAATTACGAAGCTGTATAATCTCTTCCTGAAAATTGATGCTACTCAGGTGGAAGTGAATCCCTTTGGTGA  596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GATCAAATTACGAAGCTGTATAATCTCTTCCTGAAAATTGATGCTACTCAGGTGGAAGTGAATCCCTTTGGTGA  740

Query  597  AACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATAAACTTTGATGACAACGCAGAATTCCGACAAAAAG  670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATAAACTTTGATGACAACGCAGAATTCCGACAAAAAG  814

Query  671  ACATATTTGCTATGGACGACAAATCAGAGAATGAGCCCATTGAAAATGAAGCTGCCAAATATGATCTAAAATAC  744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ACATATTTGCTATGGACGACAAATCAGAGAATGAGCCCATTGAAAATGAAGCTGCCAAATATGATCTAAAATAC  888

Query  745  ATAGGACTAGATGGGAACATTGCCTGCTTTGTGAATGGTGCTGGGCTCGCCATGGCTACTTGTGATATCATTTT  818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATAGGACTAGATGGGAACATTGCCTGCTTTGTGAATGGTGCTGGGCTCGCCATGGCTACTTGTGATATCATTTT  962

Query  819  CCTTAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGAGGTGGTGTAAAGGAAGCTCAAGTATATCAAGCAT  892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCTTAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGAGGTGGTGTAAAGGAAGCTCAAGTATATCAAGCAT  1036

Query  893  TCAAATTGCTCACAGCTGATCCTAAGGTTGAAGCCATCCTTGTCAATATATTTGGTGGTATCGTCAACTGTGCC  966
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCAAATTGCTCACAGCTGATCCTAAGGTTGAAGCCATCCTTGTCAATATATTTGGTGGTATCGTCAACTGTGCC  1110

Query  967  ATCATTGCCAATGGGATCACCAAAGCCTGCCGGGAGCTAGAACTCAAGGTGCCCCTGGTGGTCCGGCTTGAAGG  1040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATCATTGCCAATGGGATCACCAAAGCCTGCCGGGAGCTAGAACTCAAGGTGCCCCTGGTGGTCCGGCTTGAAGG  1184

Query 1041  -------------AACCAACGTCCAAG----AGGCCCAGAAGATACTCAA-CAACAGCGGACTCCCCATTACTT  1096
                         ||..||.|   |||    |.||.||.||.|    ||| .||||  |||         |.||
Sbjct 1185  TACTTTTATGGAAAAAAAAGG---AAGTTATATGCACATAAAA----CAAGAAACA--GGA---------AATT  1240

Query 1097  CAGCCATTGACCTGGAGGAT-----GCAGCCAAGAAGGCTGTGGCC----------------AGTGTGGCCA--  1147
            ||   |.|||    ||..||     |.|.||||| ||...||.|||                ||||| ||||  
Sbjct 1241  CA---AATGA----GAATATAACTGGTATCCAAG-AGAACGTCGCCCACCAAAATCTGAGTAAGTGT-GCCATC  1305

Query 1148  AGAAG----------  1152
            ||.|.          
Sbjct 1306  AGCATTTTTTTATGT  1320

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