Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11320
Subject:
XR_001783037.1
Aligned Length:
4326
Identities:
685
Gaps:
3562

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTGAGACCCCGCCTCACAGACGCTGCTTTCCCCCAACCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTCTGAGCTAGCAGTGCCTTCCCTTCGCTTCCCTTCCGCCGGAAGTGGGGCGACTTTCCCTTTCCGGCTACGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCCCGGAGCGGAGTGGGAGGCCGGACCGGGGGAGCCGAGCGACGGCGGTGGCGGTGGGCTTGGCTATGGCGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTGGTGCAGGGGCAGAGCGCTCCGGTGGGCATGAAGGCTGAGGGCTTTGTGGATGCCCTGCACCGGGTCCGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGATTGCTGCTAAAATCGATTCAATTCCTCACTTGAATAATTCCACACCTCTGGTGGACCCCTCAGTGTACGGA  370

Query    1  -------------------------ATGCCTCCTA-----TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG  44
                                     |||      |     ||||||||||||||||||||||||||||||||||
Sbjct  371  TACGGAGTACAGAAGCGGGCCCTGGATG------ATGGAGTAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG  438

Query   45  GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTATTATCGGCAGGGGAGGTGAGCAGA  118
            |.|.||||||||.||||||||||||||||||||.||||||||||||||||||||.|||||||||||||||||||
Sbjct  439  GGCAGTAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTATTATTGGCAGGGGAGGTGAGCAGA  512

Query  119  TTTCACGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCTTCAGAGAGTTCTGGGATTCCAGAGAGGCCC  192
            |||||||.|||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct  513  TTTCACGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAGAGAGTTCTGGGATTCCAGAGAGGCCC  586

Query  193  TGTGTACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCG  266
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||.|||||
Sbjct  587  TGTGTACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGGCAGATCGTGGATCGATGTCG  660

Query  267  AAATGGACCTGGCTTTCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAG  340
            .|||||.|||||||||||.||.||.||.||..|||||||||||||||||||..||||.||.||.||||||||||
Sbjct  661  GAATGGGCCTGGCTTTCACAACGATATGGATGGCAACAGCACAATCCAGGAACTTCTTATCCCTGCATCTAAAG  734

Query  341  TGGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGAGCGGACAGGGGTGAAGATGGTCATG  414
            ||||.|||||||||||||.||||||||||||.||||||||||||||||||||.||.||.|||||.|||||||||
Sbjct  735  TGGGGCTGGTCATCGGCAAAGGAGGGGAAACGATCAAGCAGTTGCAGGAGCGAACGGGTGTGAAAATGGTCATG  808

Query  415  ATCCAGGATGGCCCATTGCCCACGGGAGCAGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTACAGCA  488
            ||||||||||||||..||||.||.|||||||||||||||||.||.|||||||||||..||||||||||||||||
Sbjct  809  ATCCAGGATGGCCCGCTGCCTACAGGAGCAGACAAGCCTCTCCGCATCACTGGAGACCCATTTAAAGTACAGCA  882

Query  489  AGCAAGAGAAATGGTACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCA  562
            |||||||||||||||.|||||||||||||||||.|||||.||.||||||||.||||||||.|||.|||||||||
Sbjct  883  AGCAAGAGAAATGGTTCTAGAGATTATCCGAGAGAAAGATCAGGCTGACTTCCGGGGTGTGCGCAGCGATTTCA  956

Query  563  ACTCTCGAATGGGAGGAGGCAGTATAGAGGTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAAC  636
            .|||.|||...||.|||||.|||||||||||.||||||||||||||||.|||.||||||||.||||||||.|||
Sbjct  957  CCTCCCGAGCAGGCGGAGGTAGTATAGAGGTGTCTGTGCCTAGGTTTGTTGTTGGGATTGTCATAGGAAGGAAC  1030

Query  637  GGGGAAATGATCAAAAAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAGATGATGGGATTAGTCC  710
            ||.||||||||.||.|||||||||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||
Sbjct 1031  GGAGAAATGATTAAGAAGATCCAGAACGACGCTGGTGTGAGGATCCAATTCAAACCAGATGACGGGATTAGTCC  1104

Query  711  AGAATATTACAGA-CA--GCAGGTC----GCTTTCTACGGACAGA----CGTTAG--GGCAG------------  759
            ||||      ||| ||  |||||||    ||..||      ||||    .||.||  .||||            
Sbjct 1105  AGAA------AGAGCAGCGCAGGTCATGGGCCCTC------CAGATCGGTGTCAGCATGCAGCTCGCATCATCA  1166

Query  760  ----GCGCAGGCCCACAGC-CAGGAGCAG---------------------------------------------  783
                ||.||..|.|||.|| ||||| .||                                             
Sbjct 1167  ATGAGCTCATTCTCACGGCACAGGA-AAGAGAGATCCTTGGTGGCCTCACAGTAACAAGAGGAAGAGGCCGAGG  1239

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1240  CCGTAGTGACTGGAGTGTGGGCACTCCTGGGGGCGTCCAGGAAATTACGTACACAGTGCCAGCTGATAAGTGCG  1313

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1314  GCCTTGTGATAGGCAAAGGGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAG  1387

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1388  CGGAACCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGT  1461

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1462  GGCCAGGCATCTCATAGATGAGAAAGTTGGCGTACGTACACGGGCCTCCCCCCACCTGGCTTATACTAGCTGGA  1535

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1536  TTTGCTTTTGGATGTCCAAGGTACCTGCTTTCCCCCAGAACCTTGTGCTTCCTGTGCCTCTCCATCCTTGCATC  1609

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1610  GTGTGGGGGCAGCCTCTCCTCCTCTCCAAAGGAAAGTCCAAGGCTCAGGGAGTGCCAGGCCCCAGATGCAATGA  1683

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1684  GAGAAGCCCCTGGCATGACTGCCAGGGCTTCAGCAGTCAGACCTCCGGCCATGTCCCTGCAGGCGTAAATGAGC  1757

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1758  TGCAGGAAAGCAGCCTTCCCCCGGCACTGCCCCAGGTTCCCTCAGGCCTAACCCTGGCCACCAGCCCTACAGGC  1831

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1832  AGCTTTCATTGACTCTGGCTTTAGTTTCAGGCACCTCAAAGCAGATAAAGAAAGGGAATGTTGATGGAGGACAG  1905

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1906  ATGGGCCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCCTGGGCCAGCCTAAATTGACGGGAGA  1979

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1980  GTCAAGCAGGGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCCGCACC  2053

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2054  ACATCAAAACACCTTTCCTCCCAGGGGCTTCCCCAACATCGCAGCTAAAGTTAATGGGAATCCCCACAGCACCC  2127

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2128  CTGTGAGTGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAA  2201

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2202  CAAGTCCCAAGCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTATTACAA  2275

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2276  AAAGCAGAGTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGT  2349

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2350  ACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAGGTCTGTAGCCAG  2423

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2424  TCCCCAGCGCCATGATGCCACGCAGCCTTTGTGCTTGCCTAGCCCCAGGGTGAGCACAGTGGCCTGTGGGGGTC  2497

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2498  TCCTCTGTCCCTCCACTCCATAACTGAGCTTGAGCAGAGGCTGCTTCTAGCTCTGGGCCTAGAAACCCTGACTA  2571

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2572  TACCTAAGTGCCCTGGGTCTGCAGTGAGCCAGGACCACTCCAGCAGTAGTTCTTGCAGAGAGTGGCCAGGTTGG  2645

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2646  GCCTTTACCTGCACAGCACCTTTGGGGCCAAGCAAGTGGAGGGCCAGCTTGGCCTCTTTCTGTGTAGAAATGAG  2719

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2720  GAGGGCTCTCTCCCGTTCTCAGCCAAGAAGGAGCTCTCTTTCCTTGGACCTTGGGGGCAAGGCTCCCTCCCAGG  2793

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2794  GGGTACCTTTTGCCTTGTAGGAAGCTGGGGTTAGACCTGGTGACCCAGGAGAAGCCTTCCCCTTTCACCCCATA  2867

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2868  CCCCCACATTCTGACCCTAGAACCTGAGGTGCTTAGCATTCAGTACCTGGTGGTATGAGACTCTGGTCTTGGGC  2941

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 2942  TGACCCTCTCCCTCCCCCCACAGGAGCAGTAGATGGGCATCTGCCGCGGCTCTTCCCCGAAATCAGTGTGAGAG  3015

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3016  AAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTTTTGATGAAGACCTTTGTTTTGTTCTGTGAAACAC  3089

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3090  TATATTTAGATTAACAGAAATTTTCTAAAAATTGGGAAAATTAGTTACTAAACATTGCTGGTAATTTTTACGTC  3163

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3164  ATGATTTCTTTGTAAATGTGTGAGCTCCGGGGCTCTTGGAGCGAAACCTGCAAGCTCGGGTGCCCAAGCTCTCC  3237

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3238  TCGGAGCCTGGCATTTCATCACACGATGGCTTTGTCTTGTGTCTTTTTAGTTACAGTTTGGGGTGGGTTTGTTG  3311

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3312  TTGTTGTTGTTGTTGTTGTTGTTGGGTTTTTGGTTTTGGTTTTTGTTTTCCCTTTTTTTTTTTTTTTTTTCTGT  3385

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3386  TACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTAATGTAACAAATTCTTTAAAAATTTTTGAAGCAGTATT  3459

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3460  TAAATATTCGTAAATGTAAATTCATTGTGTTTCACCTCTAATTTCTTGTATCTTGGCTGTCTGGTTTTATTGCA  3533

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3534  TTTTTTAAAAAAAACTGAACTATTATGTATTGTAATTAATGATGTGAATTTTGAACTGAGACGGGTCCTTGTGT  3607

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3608  TGCGGGAGGGTCATTTGTGGGTTATGTCATTTCTAGCGTTTTGATGGTGATGCAGAGACGCGGTCTGCCTTCGT  3681

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3682  GTAAGCTGCTCGTCTCCATTATCCAGGGCAGTTGTGTGTCTAAGACCTCCAAGCTGGTTTTAAAAACAAAAAGC  3755

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3756  CTTTCTCTATTCTCAGAAATATAAATACTGTTATTTTTAATATTAAAAAGAAATTCAATATAACTTTTAACAAA  3829

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3830  CACTGTGGACATTAAACCATATAAAAAAATGTAGTAACTATTTTTTAATTCCAGGGTGTTTTTGCTTTTTTTCC  3903

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3904  TTAAATATTTTCTTAATATTTGTCAAATTAACTAGATAAATAAATAAATCTAGTATTAACAACAGTATGAGTTA  3977

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 3978  AATAATTTTGATTTAATAAAAGGGATACTATGATTTCCAATGTTTACTGTAGTGTATCTGTACAGATAACATGT  4051

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 4052  ATTTTTAAAGGAAACACGGAGTTGAAGCTATTTTTTCCTGCATTTTGGATTGACCTGAGGAACATTCCGTTTGA  4125

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 4126  AACGTGCTCGTTACGGTTTGCCGTTCTTGTTTTCCTTATGATGCTTGAAATGTCTAACTATTAAAAAGGCATTG  4199

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 4200  GAAATGTTATGCATGTTGTTTTTTAAAGATGTTCTTTTTATTTGACTGACAATTCATTTTACACTCTATATAAT  4273

Query  784  ----------------------------------  783
                                              
Sbjct 4274  AAAATTTCCACAAGATGTCTTGTGGGCAAAGTGT  4307

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