Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11320
- Subject:
- XR_001783037.1
- Aligned Length:
- 4326
- Identities:
- 685
- Gaps:
- 3562
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTGAGACCCCGCCTCACAGACGCTGCTTTCCCCCAACCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTCTGAGCTAGCAGTGCCTTCCCTTCGCTTCCCTTCCGCCGGAAGTGGGGCGACTTTCCCTTTCCGGCTACGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCCCGGAGCGGAGTGGGAGGCCGGACCGGGGGAGCCGAGCGACGGCGGTGGCGGTGGGCTTGGCTATGGCGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTGGTGCAGGGGCAGAGCGCTCCGGTGGGCATGAAGGCTGAGGGCTTTGTGGATGCCCTGCACCGGGTCCGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGATTGCTGCTAAAATCGATTCAATTCCTCACTTGAATAATTCCACACCTCTGGTGGACCCCTCAGTGTACGGA 370
Query 1 -------------------------ATGCCTCCTA-----TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG 44
||| | ||||||||||||||||||||||||||||||||||
Sbjct 371 TACGGAGTACAGAAGCGGGCCCTGGATG------ATGGAGTAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG 438
Query 45 GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTATTATCGGCAGGGGAGGTGAGCAGA 118
|.|.||||||||.||||||||||||||||||||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 439 GGCAGTAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTATTATTGGCAGGGGAGGTGAGCAGA 512
Query 119 TTTCACGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCTTCAGAGAGTTCTGGGATTCCAGAGAGGCCC 192
|||||||.|||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 513 TTTCACGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAGAGAGTTCTGGGATTCCAGAGAGGCCC 586
Query 193 TGTGTACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCG 266
|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||.|||||
Sbjct 587 TGTGTACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGGCAGATCGTGGATCGATGTCG 660
Query 267 AAATGGACCTGGCTTTCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAG 340
.|||||.|||||||||||.||.||.||.||..|||||||||||||||||||..||||.||.||.||||||||||
Sbjct 661 GAATGGGCCTGGCTTTCACAACGATATGGATGGCAACAGCACAATCCAGGAACTTCTTATCCCTGCATCTAAAG 734
Query 341 TGGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGAGCGGACAGGGGTGAAGATGGTCATG 414
||||.|||||||||||||.||||||||||||.||||||||||||||||||||.||.||.|||||.|||||||||
Sbjct 735 TGGGGCTGGTCATCGGCAAAGGAGGGGAAACGATCAAGCAGTTGCAGGAGCGAACGGGTGTGAAAATGGTCATG 808
Query 415 ATCCAGGATGGCCCATTGCCCACGGGAGCAGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTACAGCA 488
||||||||||||||..||||.||.|||||||||||||||||.||.|||||||||||..||||||||||||||||
Sbjct 809 ATCCAGGATGGCCCGCTGCCTACAGGAGCAGACAAGCCTCTCCGCATCACTGGAGACCCATTTAAAGTACAGCA 882
Query 489 AGCAAGAGAAATGGTACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCA 562
|||||||||||||||.|||||||||||||||||.|||||.||.||||||||.||||||||.|||.|||||||||
Sbjct 883 AGCAAGAGAAATGGTTCTAGAGATTATCCGAGAGAAAGATCAGGCTGACTTCCGGGGTGTGCGCAGCGATTTCA 956
Query 563 ACTCTCGAATGGGAGGAGGCAGTATAGAGGTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAAC 636
.|||.|||...||.|||||.|||||||||||.||||||||||||||||.|||.||||||||.||||||||.|||
Sbjct 957 CCTCCCGAGCAGGCGGAGGTAGTATAGAGGTGTCTGTGCCTAGGTTTGTTGTTGGGATTGTCATAGGAAGGAAC 1030
Query 637 GGGGAAATGATCAAAAAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAGATGATGGGATTAGTCC 710
||.||||||||.||.|||||||||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||
Sbjct 1031 GGAGAAATGATTAAGAAGATCCAGAACGACGCTGGTGTGAGGATCCAATTCAAACCAGATGACGGGATTAGTCC 1104
Query 711 AGAATATTACAGA-CA--GCAGGTC----GCTTTCTACGGACAGA----CGTTAG--GGCAG------------ 759
|||| ||| || ||||||| ||..|| |||| .||.|| .||||
Sbjct 1105 AGAA------AGAGCAGCGCAGGTCATGGGCCCTC------CAGATCGGTGTCAGCATGCAGCTCGCATCATCA 1166
Query 760 ----GCGCAGGCCCACAGC-CAGGAGCAG--------------------------------------------- 783
||.||..|.|||.|| ||||| .||
Sbjct 1167 ATGAGCTCATTCTCACGGCACAGGA-AAGAGAGATCCTTGGTGGCCTCACAGTAACAAGAGGAAGAGGCCGAGG 1239
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1240 CCGTAGTGACTGGAGTGTGGGCACTCCTGGGGGCGTCCAGGAAATTACGTACACAGTGCCAGCTGATAAGTGCG 1313
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1314 GCCTTGTGATAGGCAAAGGGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAG 1387
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1388 CGGAACCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGT 1461
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1462 GGCCAGGCATCTCATAGATGAGAAAGTTGGCGTACGTACACGGGCCTCCCCCCACCTGGCTTATACTAGCTGGA 1535
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1536 TTTGCTTTTGGATGTCCAAGGTACCTGCTTTCCCCCAGAACCTTGTGCTTCCTGTGCCTCTCCATCCTTGCATC 1609
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1610 GTGTGGGGGCAGCCTCTCCTCCTCTCCAAAGGAAAGTCCAAGGCTCAGGGAGTGCCAGGCCCCAGATGCAATGA 1683
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1684 GAGAAGCCCCTGGCATGACTGCCAGGGCTTCAGCAGTCAGACCTCCGGCCATGTCCCTGCAGGCGTAAATGAGC 1757
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1758 TGCAGGAAAGCAGCCTTCCCCCGGCACTGCCCCAGGTTCCCTCAGGCCTAACCCTGGCCACCAGCCCTACAGGC 1831
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1832 AGCTTTCATTGACTCTGGCTTTAGTTTCAGGCACCTCAAAGCAGATAAAGAAAGGGAATGTTGATGGAGGACAG 1905
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1906 ATGGGCCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCCTGGGCCAGCCTAAATTGACGGGAGA 1979
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1980 GTCAAGCAGGGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCCGCACC 2053
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2054 ACATCAAAACACCTTTCCTCCCAGGGGCTTCCCCAACATCGCAGCTAAAGTTAATGGGAATCCCCACAGCACCC 2127
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2128 CTGTGAGTGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAA 2201
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2202 CAAGTCCCAAGCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTATTACAA 2275
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2276 AAAGCAGAGTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGT 2349
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2350 ACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAGGTCTGTAGCCAG 2423
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2424 TCCCCAGCGCCATGATGCCACGCAGCCTTTGTGCTTGCCTAGCCCCAGGGTGAGCACAGTGGCCTGTGGGGGTC 2497
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2498 TCCTCTGTCCCTCCACTCCATAACTGAGCTTGAGCAGAGGCTGCTTCTAGCTCTGGGCCTAGAAACCCTGACTA 2571
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2572 TACCTAAGTGCCCTGGGTCTGCAGTGAGCCAGGACCACTCCAGCAGTAGTTCTTGCAGAGAGTGGCCAGGTTGG 2645
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2646 GCCTTTACCTGCACAGCACCTTTGGGGCCAAGCAAGTGGAGGGCCAGCTTGGCCTCTTTCTGTGTAGAAATGAG 2719
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2720 GAGGGCTCTCTCCCGTTCTCAGCCAAGAAGGAGCTCTCTTTCCTTGGACCTTGGGGGCAAGGCTCCCTCCCAGG 2793
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2794 GGGTACCTTTTGCCTTGTAGGAAGCTGGGGTTAGACCTGGTGACCCAGGAGAAGCCTTCCCCTTTCACCCCATA 2867
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2868 CCCCCACATTCTGACCCTAGAACCTGAGGTGCTTAGCATTCAGTACCTGGTGGTATGAGACTCTGGTCTTGGGC 2941
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2942 TGACCCTCTCCCTCCCCCCACAGGAGCAGTAGATGGGCATCTGCCGCGGCTCTTCCCCGAAATCAGTGTGAGAG 3015
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3016 AAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTTTTGATGAAGACCTTTGTTTTGTTCTGTGAAACAC 3089
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3090 TATATTTAGATTAACAGAAATTTTCTAAAAATTGGGAAAATTAGTTACTAAACATTGCTGGTAATTTTTACGTC 3163
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3164 ATGATTTCTTTGTAAATGTGTGAGCTCCGGGGCTCTTGGAGCGAAACCTGCAAGCTCGGGTGCCCAAGCTCTCC 3237
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3238 TCGGAGCCTGGCATTTCATCACACGATGGCTTTGTCTTGTGTCTTTTTAGTTACAGTTTGGGGTGGGTTTGTTG 3311
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3312 TTGTTGTTGTTGTTGTTGTTGTTGGGTTTTTGGTTTTGGTTTTTGTTTTCCCTTTTTTTTTTTTTTTTTTCTGT 3385
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3386 TACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTAATGTAACAAATTCTTTAAAAATTTTTGAAGCAGTATT 3459
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3460 TAAATATTCGTAAATGTAAATTCATTGTGTTTCACCTCTAATTTCTTGTATCTTGGCTGTCTGGTTTTATTGCA 3533
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3534 TTTTTTAAAAAAAACTGAACTATTATGTATTGTAATTAATGATGTGAATTTTGAACTGAGACGGGTCCTTGTGT 3607
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3608 TGCGGGAGGGTCATTTGTGGGTTATGTCATTTCTAGCGTTTTGATGGTGATGCAGAGACGCGGTCTGCCTTCGT 3681
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3682 GTAAGCTGCTCGTCTCCATTATCCAGGGCAGTTGTGTGTCTAAGACCTCCAAGCTGGTTTTAAAAACAAAAAGC 3755
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3756 CTTTCTCTATTCTCAGAAATATAAATACTGTTATTTTTAATATTAAAAAGAAATTCAATATAACTTTTAACAAA 3829
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3830 CACTGTGGACATTAAACCATATAAAAAAATGTAGTAACTATTTTTTAATTCCAGGGTGTTTTTGCTTTTTTTCC 3903
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3904 TTAAATATTTTCTTAATATTTGTCAAATTAACTAGATAAATAAATAAATCTAGTATTAACAACAGTATGAGTTA 3977
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3978 AATAATTTTGATTTAATAAAAGGGATACTATGATTTCCAATGTTTACTGTAGTGTATCTGTACAGATAACATGT 4051
Query 784 -------------------------------------------------------------------------- 783
Sbjct 4052 ATTTTTAAAGGAAACACGGAGTTGAAGCTATTTTTTCCTGCATTTTGGATTGACCTGAGGAACATTCCGTTTGA 4125
Query 784 -------------------------------------------------------------------------- 783
Sbjct 4126 AACGTGCTCGTTACGGTTTGCCGTTCTTGTTTTCCTTATGATGCTTGAAATGTCTAACTATTAAAAAGGCATTG 4199
Query 784 -------------------------------------------------------------------------- 783
Sbjct 4200 GAAATGTTATGCATGTTGTTTTTTAAAGATGTTCTTTTTATTTGACTGACAATTCATTTTACACTCTATATAAT 4273
Query 784 ---------------------------------- 783
Sbjct 4274 AAAATTTCCACAAGATGTCTTGTGGGCAAAGTGT 4307
