Construct: ORF ccsbBroadEn_11320

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012301.1_s300c1, BRDN0000395587
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FUBP3 (8939)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8939 FUBP3 far upstream element bindin... XM_011519172.3 48.4% 46.2% (many diffs)
2 human 8939 FUBP3 far upstream element bindin... XM_011519173.2 46.6% 44.3% (many diffs)
3 human 8939 FUBP3 far upstream element bindin... XM_017015269.1 46.1% 47.9% (many diffs)
4 human 8939 FUBP3 far upstream element bindin... XM_005272232.2 45.5% 46.8% (many diffs)
5 human 8939 FUBP3 far upstream element bindin... XM_006717313.2 44% 42% (many diffs)
6 human 8939 FUBP3 far upstream element bindin... XM_011519174.2 44% 42% (many diffs)
7 human 8939 FUBP3 far upstream element bindin... NM_003934.2 43.6% 41.6% (many diffs)
8 human 8939 FUBP3 far upstream element bindin... XM_017015273.1 24.2% 25.8% (many diffs)
9 human 8939 FUBP3 far upstream element bindin... XR_001746412.2 23.8% (many diffs)
10 human 8939 FUBP3 far upstream element bindin... XR_001746411.2 23.3% (many diffs)
11 human 8939 FUBP3 far upstream element bindin... XM_017015270.1 23.1% 21.1% (many diffs)
12 human 8939 FUBP3 far upstream element bindin... XM_017015271.1 23.1% 21.1% (many diffs)
13 human 8939 FUBP3 far upstream element bindin... XM_017015272.1 23.1% 21.1% (many diffs)
14 human 8939 FUBP3 far upstream element bindin... XR_001746413.1 17.3% (many diffs)
15 mouse 320267 Fubp3 far upstream element (FUSE)... XM_017319016.1 41.4% 45.1% (many diffs)
16 mouse 320267 Fubp3 far upstream element (FUSE)... XM_006498129.1 40.9% 41.1% (many diffs)
17 mouse 320267 Fubp3 far upstream element (FUSE)... XM_017319015.1 39.7% 39.9% (many diffs)
18 mouse 320267 Fubp3 far upstream element (FUSE)... NM_001290548.1 39.6% 39.8% (many diffs)
19 mouse 320267 Fubp3 far upstream element (FUSE)... XM_006498127.1 39.3% 39.5% (many diffs)
20 mouse 320267 Fubp3 far upstream element (FUSE)... NM_001033389.4 39.2% 39.4% (many diffs)
21 mouse 320267 Fubp3 far upstream element (FUSE)... XM_006498126.1 39.2% 39.4% (many diffs)
22 mouse 320267 Fubp3 far upstream element (FUSE)... XR_001783041.1 20% (many diffs)
23 mouse 320267 Fubp3 far upstream element (FUSE)... XR_001783039.1 18.1% (many diffs)
24 mouse 320267 Fubp3 far upstream element (FUSE)... XR_001783038.1 17.8% (many diffs)
25 mouse 320267 Fubp3 far upstream element (FUSE)... XR_001783040.1 17.2% (many diffs)
26 mouse 320267 Fubp3 far upstream element (FUSE)... XR_001783042.1 16.6% (many diffs)
27 mouse 320267 Fubp3 far upstream element (FUSE)... XR_001783037.1 15.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
849
ORF length:
783
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC TCCTATAGGT AACCAGTTAG GGGCCTTGGT ACATCAAAGG ACGGTAATAA
121CGGAAGAATT CAAAGTGCCT GACAAAATGG TTGGATTTAT TATCGGCAGG GGAGGTGAGC
181AGATTTCACG GATTCAAGCA GAATCTGGTT GCAAAATTCA GATTGCTTCA GAGAGTTCTG
241GGATTCCAGA GAGGCCCTGT GTACTTACCG GAACCCCAGA AAGTATTGAA CAAGCCAAAC
301GGCTCCTGGG ACAGATTGTG GACCGCTGTC GAAATGGACC TGGCTTTCAT AATGACATAG
361ACAGCAACAG CACAATCCAG GAGATTCTCA TTCCCGCATC TAAAGTGGGT CTGGTCATCG
421GCAGAGGAGG GGAAACAATC AAGCAGTTGC AGGAGCGGAC AGGGGTGAAG ATGGTCATGA
481TCCAGGATGG CCCATTGCCC ACGGGAGCAG ACAAGCCTCT TCGTATCACT GGAGATGCAT
541TTAAAGTACA GCAAGCAAGA GAAATGGTAC TAGAGATTAT CCGAGAAAAA GACCAAGCTG
601ACTTTCGGGG TGTACGCGGC GATTTCAACT CTCGAATGGG AGGAGGCAGT ATAGAGGTAT
661CTGTGCCTAG GTTTGCTGTG GGGATTGTAA TAGGAAGAAA CGGGGAAATG ATCAAAAAGA
721TCCAGAATGA TGCTGGTGTG AGGATTCAGT TTAAACCAGA TGATGGGATT AGTCCAGAAT
781ATTACAGACA GCAGGTCGCT TTCTACGGAC AGACGTTAGG GCAGGCGCAG GCCCACAGCC
841AGGAGCAGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
901tttgttgcaa cgaac

Download FASTA (ORF) (Full)