Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11320
- Subject:
- XR_001783040.1
- Aligned Length:
- 3963
- Identities:
- 685
- Gaps:
- 3199
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTGAGACCCCGCCTCACAGACGCTGCTTTCCCCCAACCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTCTGAGCTAGCAGTGCCTTCCCTTCGCTTCCCTTCCGCCGGAAGTGGGGCGACTTTCCCTTTCCGGCTACGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCCCGGAGCGGAGTGGGAGGCCGGACCGGGGGAGCCGAGCGACGGCGGTGGCGGTGGGCTTGGCTATGGCGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTGGTGCAGGGGCAGAGCGCTCCGGTGGGCATGAAGGCTGAGGGCTTTGTGGATGCCCTGCACCGGGTCCGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGATTGCTGCTAAAATCGATTCAATTCCTCACTTGAATAATTCCACACCTCTGGTGGACCCCTCAGTGTACGGA 370
Query 1 -------------------------ATGCCTCCTA-----TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG 44
||| | ||||||||||||||||||||||||||||||||||
Sbjct 371 TACGGAGTACAGAAGCGGGCCCTGGATG------ATGGAGTAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG 438
Query 45 GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTATTATCGGCAGGGGAGGTGAGCAGA 118
|.|.||||||||.||||||||||||||||||||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 439 GGCAGTAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTATTATTGGCAGGGGAGGTGAGCAGA 512
Query 119 TTTCACGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCTTCAGAGAGTTCTGGGATTCCAGAGAGGCCC 192
|||||||.|||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 513 TTTCACGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAGAGAGTTCTGGGATTCCAGAGAGGCCC 586
Query 193 TGTGTACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCG 266
|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||.|||||
Sbjct 587 TGTGTACTTACCGGAACCCCAGAAAGTATTGAACAAGCCAAACGGCTCCTGGGGCAGATCGTGGATCGATGTCG 660
Query 267 AAATGGACCTGGCTTTCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAG 340
.|||||.|||||||||||.||.||.||.||..|||||||||||||||||||..||||.||.||.||||||||||
Sbjct 661 GAATGGGCCTGGCTTTCACAACGATATGGATGGCAACAGCACAATCCAGGAACTTCTTATCCCTGCATCTAAAG 734
Query 341 TGGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGAGCGGACAGGGGTGAAGATGGTCATG 414
||||.|||||||||||||.||||||||||||.||||||||||||||||||||.||.||.|||||.|||||||||
Sbjct 735 TGGGGCTGGTCATCGGCAAAGGAGGGGAAACGATCAAGCAGTTGCAGGAGCGAACGGGTGTGAAAATGGTCATG 808
Query 415 ATCCAGGATGGCCCATTGCCCACGGGAGCAGACAAGCCTCTTCGTATCACTGGAGATGCATTTAAAGTACAGCA 488
||||||||||||||..||||.||.|||||||||||||||||.||.|||||||||||..||||||||||||||||
Sbjct 809 ATCCAGGATGGCCCGCTGCCTACAGGAGCAGACAAGCCTCTCCGCATCACTGGAGACCCATTTAAAGTACAGCA 882
Query 489 AGCAAGAGAAATGGTACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCA 562
|||||||||||||||.|||||||||||||||||.|||||.||.||||||||.||||||||.|||.|||||||||
Sbjct 883 AGCAAGAGAAATGGTTCTAGAGATTATCCGAGAGAAAGATCAGGCTGACTTCCGGGGTGTGCGCAGCGATTTCA 956
Query 563 ACTCTCGAATGGGAGGAGGCAGTATAGAGGTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAAC 636
.|||.|||...||.|||||.|||||||||||.||||||||||||||||.|||.||||||||.||||||||.|||
Sbjct 957 CCTCCCGAGCAGGCGGAGGTAGTATAGAGGTGTCTGTGCCTAGGTTTGTTGTTGGGATTGTCATAGGAAGGAAC 1030
Query 637 GGGGAAATGATCAAAAAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAGATGATGGGATTAGTCC 710
||.||||||||.||.|||||||||||.||.||||||||||||||.||.||.|||||||||||.|||||||||||
Sbjct 1031 GGAGAAATGATTAAGAAGATCCAGAACGACGCTGGTGTGAGGATCCAATTCAAACCAGATGACGGGATTAGTCC 1104
Query 711 AGAATATTACAGA-CA--GCAGGTC----GCTTTCTACGGACAGA----CGTTAG--GGCAG------------ 759
|||| ||| || ||||||| ||..|| |||| .||.|| .||||
Sbjct 1105 AGAA------AGAGCAGCGCAGGTCATGGGCCCTC------CAGATCGGTGTCAGCATGCAGCTCGCATCATCA 1166
Query 760 ----GCGCAGGCCCACAGC-CAGGAGCAG--------------------------------------------- 783
||.||..|.|||.|| ||||| .||
Sbjct 1167 ATGAGCTCATTCTCACGGCACAGGA-AAGAGAGATCCTTGGTGGCCTCACAGTAACAAGAGGAAGAGGCCGAGG 1239
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1240 CCGTAGTGACTGGAGTGTGGGCACTCCTGGGGGCGTCCAGGAAATTACGTACACAGTGCCAGCTGATAAGTGCG 1313
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1314 GCCTTGTGATAGGCAAAGGGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAG 1387
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1388 CGGAACCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGT 1461
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1462 GGCCAGGCATCTCATAGATGAGAAAGTTGGCTTTCAGGCACCTCAAAGCAGATAAAGAAAGGGAATGTTGATGG 1535
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1536 AGGACAGATGGGCCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCCTGGGCCAGCCTAAATTGA 1609
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1610 CGGGAGAGTCAAGCAGGGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAG 1683
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1684 CCGCACCACATCAAAACACCTTTCCTCCCAGGGGCTTCCCCAACATCGCAGCTAAAGTTAATGGGAATCCCCAC 1757
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1758 AGCACCCCTGTGAGTGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCC 1831
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1832 TACACAACAAGTCCCAAGCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACT 1905
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1906 ATTACAAAAAGCAGAGTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGG 1979
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1980 GCTGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAGGTCTG 2053
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2054 TAGCCAGTCCCCAGCGCCATGATGCCACGCAGCCTTTGTGCTTGCCTAGCCCCAGGGTGAGCACAGTGGCCTGT 2127
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2128 GGGGGTCTCCTCTGTCCCTCCACTCCATAACTGAGCTTGAGCAGAGGCTGCTTCTAGCTCTGGGCCTAGAAACC 2201
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2202 CTGACTATACCTAAGTGCCCTGGGTCTGCAGTGAGCCAGGACCACTCCAGCAGTAGTTCTTGCAGAGAGTGGCC 2275
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2276 AGGTTGGGCCTTTACCTGCACAGCACCTTTGGGGCCAAGCAAGTGGAGGGCCAGCTTGGCCTCTTTCTGTGTAG 2349
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2350 AAATGAGGAGGGCTCTCTCCCGTTCTCAGCCAAGAAGGAGCTCTCTTTCCTTGGACCTTGGGGGCAAGGCTCCC 2423
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2424 TCCCAGGGGGTACCTTTTGCCTTGTAGGAAGCTGGGGTTAGACCTGGTGACCCAGGAGAAGCCTTCCCCTTTCA 2497
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2498 CCCCATACCCCCACATTCTGACCCTAGAACCTGAGGTGCTTAGCATTCAGTACCTGGTGGTATGAGACTCTGGT 2571
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2572 CTTGGGCTGACCCTCTCCCTCCCCCCACAGGAGCAGTAGATGGGCATCTGCCGCGGCTCTTCCCCGAAATCAGT 2645
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2646 GTGAGAGAAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTTTTGATGAAGACCTTTGTTTTGTTCTGT 2719
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2720 GAAACACTATATTTAGATTAACAGAAATTTTCTAAAAATTGGGAAAATTAGTTACTAAACATTGCTGGTAATTT 2793
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2794 TTACGTCATGATTTCTTTGTAAATGTGTGAGCTCCGGGGCTCTTGGAGCGAAACCTGCAAGCTCGGGTGCCCAA 2867
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2868 GCTCTCCTCGGAGCCTGGCATTTCATCACACGATGGCTTTGTCTTGTGTCTTTTTAGTTACAGTTTGGGGTGGG 2941
Query 784 -------------------------------------------------------------------------- 783
Sbjct 2942 TTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGGTTTTTGGTTTTGGTTTTTGTTTTCCCTTTTTTTTTTTTTTT 3015
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3016 TTTCTGTTACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTAATGTAACAAATTCTTTAAAAATTTTTGAAG 3089
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3090 CAGTATTTAAATATTCGTAAATGTAAATTCATTGTGTTTCACCTCTAATTTCTTGTATCTTGGCTGTCTGGTTT 3163
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3164 TATTGCATTTTTTAAAAAAAACTGAACTATTATGTATTGTAATTAATGATGTGAATTTTGAACTGAGACGGGTC 3237
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3238 CTTGTGTTGCGGGAGGGTCATTTGTGGGTTATGTCATTTCTAGCGTTTTGATGGTGATGCAGAGACGCGGTCTG 3311
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3312 CCTTCGTGTAAGCTGCTCGTCTCCATTATCCAGGGCAGTTGTGTGTCTAAGACCTCCAAGCTGGTTTTAAAAAC 3385
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3386 AAAAAGCCTTTCTCTATTCTCAGAAATATAAATACTGTTATTTTTAATATTAAAAAGAAATTCAATATAACTTT 3459
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3460 TAACAAACACTGTGGACATTAAACCATATAAAAAAATGTAGTAACTATTTTTTAATTCCAGGGTGTTTTTGCTT 3533
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3534 TTTTTCCTTAAATATTTTCTTAATATTTGTCAAATTAACTAGATAAATAAATAAATCTAGTATTAACAACAGTA 3607
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3608 TGAGTTAAATAATTTTGATTTAATAAAAGGGATACTATGATTTCCAATGTTTACTGTAGTGTATCTGTACAGAT 3681
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3682 AACATGTATTTTTAAAGGAAACACGGAGTTGAAGCTATTTTTTCCTGCATTTTGGATTGACCTGAGGAACATTC 3755
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3756 CGTTTGAAACGTGCTCGTTACGGTTTGCCGTTCTTGTTTTCCTTATGATGCTTGAAATGTCTAACTATTAAAAA 3829
Query 784 -------------------------------------------------------------------------- 783
Sbjct 3830 GGCATTGGAAATGTTATGCATGTTGTTTTTTAAAGATGTTCTTTTTATTTGACTGACAATTCATTTTACACTCT 3903
Query 784 ----------------------------------------- 783
Sbjct 3904 ATATAATAAAATTTCCACAAGATGTCTTGTGGGCAAAGTGT 3944
