Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11342
- Subject:
- NM_001285446.1
- Aligned Length:
- 1842
- Identities:
- 1006
- Gaps:
- 711
Alignment
Query 1 ATGGGGTTTCACCATGTTGGCCAGGCTCGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCATTGGCCTCCCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 ACGTGCTGGGATTACAGTTGGTCCTGAGAAAAGGGTGCCAGCGATGCCTGGATCGCCTGTGGAAGTGAAGATAC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AGTCCAGATCCTCACCTCCCACCATGCCACCCCTCCCACCAATAAATCCTGGAGGACCGAGGCCAGTGTCCTTC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ACTCCTACTGCATTAAGCAATGGCATCAACCATTCTCCTCCTACCCTGAATGGTGCCCCATCACCGCCACAGAG 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 ATTCAGCAATGGTCCTGCCTCCTCCACATCATCTGCACTCACAAATCAGCAATTGCCAGCCACTTGTGGTGCTC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GACAACTCAGCAAGTTGAAACGCTTTCTTACCACTCTGCAACAGTTTGGCAATGACATCTCCCCTGAGATTGGG 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GAGAAGGTGCGGACTCTTGTTCTTGCACTGGTGAACTCAACAGTGACAATTGAGGAATTCCACTGTAAGCTCCA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 AGAAGCCACAAACTTTCCCCTTCGTCCTTTTGTGATTCCATTTCTCAAGGCCAACCTGCCCCTGCTGCAGCGGG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AACTGCTGCACTGCGCTCGGGCGGCCAAGCAGACCCCATCCCAGTACCTGGCTCAGCACGAACACCTTCTGCTC 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AACACAAGCATTGCATCGCCTGCTGACTCGTCAGAGTTGCTCATGGAGGTGCACGGAAATGGGAAGAGGCCCAG 740
||||||||.||.||||||||.|||||||||||
Sbjct 1 ------------------------------------------ATGGAGGTTCATGGAAATGGAAAGAGGCCCAG 32
Query 741 TCCAGAGAGGAGAGAAGAGAATAGTTTTGATAGAGACACAATTGCTCCTGAGCCTCCTGCCAAGAGAGTATGTA 814
|||.||.|||||.||.|||||||.||||||.|||||.|||.||.|||||||.||.||||||||||||||.||||
Sbjct 33 TCCGGAAAGGAGGGACGAGAATAATTTTGAAAGAGATACAGTTCCTCCTGAACCGCCTGCCAAGAGAGTGTGTA 106
Query 815 CCATCAGCCCTGCTCCTCGGCACAGTCCTGCTCTCACTGTGCCCCTCATGAATCCTGGGGGCCAATTCCATCCT 888
|.||||||||||||||||||||||||||.||.||||||||.|||||.|||||||||||||||||.|||||||||
Sbjct 107 CTATCAGCCCTGCTCCTCGGCACAGTCCCGCCCTCACTGTTCCCCTTATGAATCCTGGGGGCCAGTTCCATCCT 180
Query 889 ACCCCTCCACCTCTTCAGCATTACACCTTAGAGGATATTGCAACTTCTCACCTGTATCGGGAACCCAACAAGAT 962
||.||.||||||||||||||.||.||..||||.||.|||||||||||||||||||||||||||||.||||||||
Sbjct 181 ACTCCACCACCTCTTCAGCACTATACACTAGAAGACATTGCAACTTCTCACCTGTATCGGGAACCAAACAAGAT 254
Query 963 GCTAGAGCATCGAGAAGTTCGTGATAGACACCACAGTCTTGGTCTAAATGGAGGCTATCAAGATGAGTTGGTAG 1036
||||||.||.||||||||||||||.||.|||||||.||||.||||.||||||||||||||||||||||||||||
Sbjct 255 GCTAGAACACCGAGAAGTTCGTGAGAGGCACCACAATCTTAGTCTCAATGGAGGCTATCAAGATGAGTTGGTAG 328
Query 1037 ATCATCGTTTGACAGAAAGGGAATGGGCTGATGAATGGAAACATCTTGACCATGCGCTGAATTGCATTATGGAA 1110
|.||.|||||||||||||||||.||||||||||||||||||||.|||||||||||.||||||||||||||||||
Sbjct 329 ACCACCGTTTGACAGAAAGGGAGTGGGCTGATGAATGGAAACACCTTGACCATGCACTGAATTGCATTATGGAA 402
Query 1111 ATGGTAGAGAAAACAAGGCGCTCTATGGCAGTTCTGCGGCGCTGTCAGGAATCAGATCGTGAAGAACTCAACTA 1184
||||||||||||||.||||||||.||||||||||||.||||||||||||||||.||.|||||||||||||||||
Sbjct 403 ATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGTCAGGAATCTGACCGTGAAGAACTCAACTA 476
Query 1185 CTGGAAAAGACGGTACAATGAAAACACAGAGCTGAGGAAAACGGGGACCGAGTTGGTCTCCAGGCAGCACAGCC 1258
.||||||.|.||||..||||||||.||||||.||||||||||.|||||.|||||||||||.|||||||||||||
Sbjct 477 TTGGAAACGGCGGTTTAATGAAAATACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAGGCAGCACAGCC 550
Query 1259 CTGGGAGTGCAGATTCTCTCAGCAATGATTCTCAGAGAGAGTTCAACAGCAGGCCAGGTACAGGATACGTACCT 1332
||||||||.||||||||||||||||.|||||||||.|.||.||.|.|||.||.||||..||||||||.||.|||
Sbjct 551 CTGGGAGTACAGATTCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAGGATATGTGCCT 624
Query 1333 GTGGAGTTTTGGAAAAAAACAGAAGAAGCTGTGAATAAGGTGAAAATTCAGGCCATGTCAGAAGTACAGAAGGC 1406
||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 625 GTGGAGTTTTGGAAGAAAACAGAAGAAGCCGTGAATAAGGTGAAAATTCAGGCCATGTCAGAGGTACAGAAGGC 698
Query 1407 CGTCGCTGAGGCAGAGCAGAAAGCCTTTGAAGTGATTGCAACAGAGAGAGCACGAATGGAGCAAACCATAGCGG 1480
.||.||||||||||||||.|||||||||||||||||||||||.||||||||.|||||||||||.||||||||||
Sbjct 699 TGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCAGACCATAGCGG 772
Query 1481 ATGTCAAGCGGCAGGCCGCAGAGGATGCTTTCCTCGTCATCAATGAGCAAGAGGAGTCCACGGAGAACTGCTGG 1554
|||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.||||||||||||
Sbjct 773 ATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAGAGAACTGCTGG 846
Query 1555 AACTGTGGCCGCAAAGCCAGCGAGACATGCAGTGGCTGCAATATCGCGCGATACTGTGGCTCTTTCTGCCAGCA 1628
|||||||||||.||||||||.|||||.||||||||||||||.||.||.||.|||||.|||||.|||||||||||
Sbjct 847 AACTGTGGCCGAAAAGCCAGTGAGACGTGCAGTGGCTGCAACATTGCTCGCTACTGCGGCTCCTTCTGCCAGCA 920
Query 1629 CAAGGACTGGGAGCGGCACCACCGCCTCTGTGGTCAGAACCTGCATGGCCAGAGCCCCCACGGCCAGGGCCGGC 1702
.||||||||||||||||||||||||||||||||.||||..||.||||||||.||.||||||.|||||.||.|||
Sbjct 921 TAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCACAGTCCCCACAGCCAGAGCAGGC 994
Query 1703 CGCTGCTTCCTGTAGGCAGGGGCTCCTCTGCCAGGTCCGCCGACTGCAGCGTGCCCAGCCCAGCCCTCGACAAG 1776
|.|||||.||||.|||..|||| |||.||||||||.||.||||||||.|||||||||||||||||.||||||
Sbjct 995 CACTGCTCCCTGGAGGGCGGGG---CTCAGCCAGGTCTGCTGACTGCAGTGTGCCCAGCCCAGCCCTGGACAAG 1065
Query 1777 ACCTCGGCAACCACATCGCGTTCCTCAACACCTGCTTCTGTGACAGCTATCGACACCAACGGACTC 1842
|||||.||.|||||.||.||.||||||||||||||.|||||||||||.||.||..|||||||.|||
Sbjct 1066 ACCTCAGCTACCACCTCACGGTCCTCAACACCTGCCTCTGTGACAGCCATTGATGCCAACGGGCTC 1131
