Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11391
Subject:
XR_002958675.1
Aligned Length:
4348
Identities:
629
Gaps:
3642

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCATCCTATGAATTGGGTCATTCATGTCCTACCCAGCTAAAACAGAGGCCAGGAGCCAGGGAGGAAAAGCAGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGCCACACAACATTGTTTCCGAAATGGACTTCTCTGCAAGCCTGACTCCTGAGACTGTGCATTGTACCCTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AACCAGCTTTATCCATAGCTTCTGCGATAAATGGCTGTAAGTCTTGGACTCCTTGCTCCAAACGCAGCGACTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCAATAGAACCTCCCAGCTCCCAGCCCTTCCTAGTGCCCATGGGCTTTACATAGGGCAAGAGAACATTTCTCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTATAATTGCCATCTCTTTGCTCTCTCAACATGGTGAACACCATCCGGACTCCGTGTATGTCTCAAATTACAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTCTTTCTTTGCAAATGAAATATGAAATTTAGAGGCTCTTCTAAACACTTTAAATTTGATTTGACATTTTCAAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCAGATGTAAGTTTTAGAGAATGAGATTCTCCATAAAAATGACCCTTTCATGCTGTGGCCTCCATAGAAGATGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCAGGCCAGGTGCCCACATGGCAGGCATTTATTTTCTCACAGATCTGGAAGCTGCAGGTCCAACTTCGAGGGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGGGTGGGGTTGTTTCCTCTGAGGCCGCTCCTTCTGGCTGGCAGGGAGTCTCTTCCAGCCGTGTCCTCTGTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTTCCTCTATGCACACGCACCTCTGGGATCTCTCTGCCTCCAAATATCATCTTTTTTTTTTTTTTTTTTTTTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGAGACAGAGTGTTGCTCCTCTTGTCCAGGCTGGAATGCAATGGCACAATCTGGACTCACTGCAACCTCCGCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TCCCGAGTTTAAGCGATTCTTCTGCTTCAGCCTCCCGAGTAAAAGGCATGCATCACCACACCTGGTTAATTTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TAGTTTTAGTAGAGATGGGGTCTCACCATGTTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTCTCAGCCTCTCCAAGTGCTGGGATTACAGGCATCAGCCACTATGCCCGGCTGGGATCATATGTTCCACACAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTTTGTTCAATAAGCATGGACTGCAACCACCTACATGAATATTCATAGCTCCTCCTGTAGCCTGTTGAATATGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATGTTTAGCCAACCTCTTCAGCATAAAGCTCCTGCCCAAACCCCTCCTGCTCCTAAATGTCTGTCTCTGGTGTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AACCAGAGGCTGCTCTTCCCAGGCTGCTGGATGGCTACCTTGCAGGCTGTCACCCTTAACAAGAAATAAAGTGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTTTGCAAATGCATCCCTTGTGTAATTTGTAGGTCACCGCGCCATGGGAACACGCTACCATGGGAAGGGAGCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTGAGACGCGCAGGGAGGCTCCAGACAGGCTGGCCTGGGACACCAGCCGCTGCCCTTCCATAACATGGGGACAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAGAGGGCAAAAGTTCAGCCCAACACGGAGGATCTTCGGGCAGGAGATGGGGAAGAAGGAGAAGCAGGAAGGAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGAGCTCAGTGTGGGGGCGCGCATGGCATCCCGGTGGGACATCTGAGGCCCACACCCACCTGCTGTCCCTCCCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCCACGGTGGCCACCGAGGGTGAAGGCCTGGGGGGAGGCAGACGCCTGGCCCTTTACTCTCCCTCCCTGTCCCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGGCCGCTGGGTGGGGGCCGTCTCTGGGATGATCCCCGAGGGCAGGATCCGGGAGTCCCTGCAGAGGCATCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCTGTCTGTCTTGATGGTGGAGTGGCGGCTCCAGCTGGGCGGGACCACCAGGGGAGGGGCTTGTGCTCTGCTGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTCAGCCTGGTGTGGACCCACCTCCCGGGCGCTGGCTGCAATGACTTTCTCTTTCCCTTTGCAATTGCCTTGGG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCCTGCCGCACAGAGCGGCCTGTCTTTATCAGAGGTCCCTCTGCCAGGGGGAGGGCCCCAGAGAAAACCAGAAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GAGGGTGAGAGACTGAGGAAGATAAAGCGTCCCAGGGCCTCCTACACCAGCGCCTGAGCAGGAAGGGGGAGGGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCATGACTACGAGGCCCTGGGAGGTCACTTTAGGGAGGGCTGTCCTGAAACCTGGAGCCTGGAGCAGAAAGTGA  2072

Query    1  -------------------------------------------------ATGAATCCACAGATCAGAAATCCGA  25
                                                             |||||.||.||..|||||||..|..
Sbjct 2073  AACCCTGGTGCTCCAGACAAAGATCTTAGTCGGGACTAGCCGGCCAAGGATGAAGCCTCACTTCAGAAACACAG  2146

Query   26  TGGAGCGGATGTATCGAGACACATTCTACGACAACTTTGAAAACGAACCCATCCTCTATGGTCGGAGCTACACT  99
            |||||||.|||||||||||||||||||.|.||||||||.|.||...|||||||||.|.|.|||||| .|||..|
Sbjct 2147  TGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACCCATCCTTTCTCGTCGGA-ATACCGT  2219

Query  100  -TGGCTGTGCTATGAAGTGAAAATAAAGAGGGGCCGCTCAAATCTCCTTTGGGACACAGGGGTCTTTCGAGGCC  172
             |||||||||||.||||||||||.|||   |||.|.|||||..|.||.||.||||.||..|.||||||||||||
Sbjct 2220  CTGGCTGTGCTACGAAGTGAAAACAAA---GGGTCCCTCAAGGCCCCGTTTGGACGCAAAGATCTTTCGAGGCC  2290

Query  173  AGGTGTATTTCGAGCCTCAGTACCACGCAGAAATGTGCTTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCT  246
            |||||||||.|.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291  AGGTGTATTCCCAGCCTGAGCACCACGCAGAAATGTGCTTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCT  2364

Query  247  TACAAGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATT  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2365  TACAAGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATT  2438

Query  321  CCTGTCTGAGCACCCCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCTACTACTACTGGGAAAGAGATTACC  394
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439  CCTGGCTGAGCACCCCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCTACTACTACTGGGAAAGAGATTACC  2512

Query  395  GAAGGGCGCTCTGCAGGCTGAGTCAGGCAGGAGCCCGCGTGAAGATCATGGACTATGAAGAATTTGCATACTGC  468
            |||||||||||||||||||||||||||||||.||||||||||||||.||||||.||||||||||||||||||||
Sbjct 2513  GAAGGGCGCTCTGCAGGCTGAGTCAGGCAGGGGCCCGCGTGAAGATTATGGACGATGAAGAATTTGCATACTGC  2586

Query  469  TGGGAAAACTTTGTGTACAATGAAGGTCAGCAATTCATGCCTTGGTACAAATTCGATGAAAATTATGCATTCCT  542
            |||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||.||||||||||||||
Sbjct 2587  TGGGAAAACTTTGTGTACAGTGAAGGTCAGCCATTCATGCCTTGGTACAAATTCGATGACAATTATGCATTCCT  2660

Query  543  GCACCGCACGCTAAAGGAGATTCTCAGG------CTAAGAATCTTCTCTGTGGCTTTTACGGCCGCCATGC---  607
            ||||||||||||||||||||||||||||      ||.|||..|.|   |||               |||||   
Sbjct 2661  GCACCGCACGCTAAAGGAGATTCTCAGGTGGATCCTGAGACCCAT---TGT---------------CATGCAGA  2716

Query  608  --GGAGCTGCGCT-TCTTGGACCTGGTTCCTTCTTTG--------CAGT-TGGACCCGGCCCAGATCTACAGGG  669
              ||.|||.| || ||||||          ||||.||        |.|| |   ||...|.|| |.||||..||
Sbjct 2717  AAGGTGCTTC-CTCTCTTGG----------TTCTGTGACGACATACTGTCT---CCTAACACA-AACTACGAGG  2775

Query  670  TCACTTGGTTCATCTCCTGGAGCCCCTGCTTCTCCTGGGGCTGTGCCGGGGAAGTGCGTGCGTTCCT--TCAGG  741
            ||||.||||.||..||.||||||||.|||    ||.|.|  |||||.|||||.|||...|.||||||  .||||
Sbjct 2776  TCACCTGGTACACATCTTGGAGCCCTTGC----CCAGAG--TGTGCAGGGGAGGTGGCCGAGTTCCTGGCCAGG  2843

Query  742  AGAACACA--CACG------------------------------------------------------------  753
                ||||  .|||                                                            
Sbjct 2844  ----CACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTACTACTTCTGGGATACAGATTACCAGGAGG  2913

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2914  GGCTCCGCAGCCTGAGTCAGGAAGGGGCCTCCGTGGAGATCATGGGCTACAAAGATTTTAAATATTGTTGGGAA  2987

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 2988  AACTTTGTGTACAATGATGATGAGCCATTCAAGCCTTGGAAAGGACTAAAATACAACTTTCTATTCCTGGACAG  3061

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3062  CAAGCTGCAGGAGATTCTCGAGTGAGGGGTCTCCCCGGGCCTCATGGTCTGTCTCCTCTAGCCTCCTGCTCATG  3135

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3136  TTGTGCAGGCCTCCCCTCCATCCTGGACCAGCTGTGCTTTTGCCTGGTCATCCTGAGCCCCTCCTGGCCTCAGG  3209

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3210  GCCATTCCATAGTGCTCCCCTGCCTCACCACCTCCTCTCCGCTCTCCCAGGCTCTTCCTGCAGAGGCCTCTTTC  3283

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3284  TGCCTCCATGGCTATCCATCCACCCACCAAGACCCTGTTCCCTGAGCCTGCATGCCCCTAACCTGCCTTTTCCC  3357

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3358  ATCTCCCCAGCATAACCTAATATTTTTTTTTTTTTTTTGAGACGGAATTTCGCTCTGTCACCCAGACTGGAGTG  3431

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3432  CAATGGCTTGATCTTGGCTCACTGCAAACTCTGCCTACCAGGTTCAAGCGATTCTCCTGCCTCCGCCTCCCGAG  3505

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3506  TAGCTGGAATTACAGACGCCTGCCACCACGCACAGCTAACTTTTTTTTTTTTTGTATTTTTAGTAGTGACTGGG  3579

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3580  TTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCTATCTCAGCCTCCCAAAGTGC  3653

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3654  TGGGATTACAGGCGTGAGCCACTGGCCCGGCGGCACAACCAAATCTTATTAAACTCACCCTAGGCTGGCCGCGG  3727

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3728  TGACTCATGCCTATAATCCCCCAGCAATTTGGGAGGCAGAGGTGAGAGAATCGCTTGAGCCCAGGAATTCGAGA  3801

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3802  CCAGCCTGGGCCACATGACAAAGCCCCATCTCTACAAAAAAATTACAAAAAAAAAAAAAACAGGTGTGGTGGCA  3875

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3876  TGCACCTGTAGTTGAAGCTACTTGGAAGGATGAAGTGGGAGGATTGCTTGAGCCGGGGAGGTGGAGGCTGCAGT  3949

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 3950  GAACTGAGATCACGTCACTGAACTCCAGTCTGAGCAACAGATCGAGACCCTGCCTGAAAATAAATCAATAAATA  4023

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4024  AACTCAACCGAAATGGGTATGAAAGTTGAAATGGGTATGTAAGTTGAAAACCAGAAGTTTTGAGAAACATCCTT  4097

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4098  TGTTAACTTTCATCCTACAAATTGGGTCATTCATGTCCTACGCAGCTAAAACAGAGCCCAGGAGCCAGGGAGGA  4171

Query  754  --------------------------------------------------------------------------  753
                                                                                      
Sbjct 4172  AAAGCAGTCAGGCCACACACCATTGCTCCCAAAATGGACTTCTCTGCAAGCCTGACTCCTGAAACTGTGCATTG  4245

Query  754  --------------------------------------------------------  753
                                                                    
Sbjct 4246  TACCCTGAAACCAGCTTTATCCATAGCTTCTGCAATAAATGGCTGTAAGTCTTGGA  4301

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