Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11429
- Subject:
- XR_001740391.1
- Aligned Length:
- 3372
- Identities:
- 989
- Gaps:
- 2372
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TAAAATTAAGGTCACATTTCGAGTTATTGGGATGAGGACTCCAGTCCACCTCTTTGGAGAGTTAGAGTTCAACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTAACAATTTTAAAAGATGGAGATTATCCTGGATTATCTAGCGGTCCCTATCTAATCACGTGGGCCTTTAAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATGATAACTTTCTCTGGCTGGAGCCAGAAGAGCGGGGGCACCAGAAGGGAAAATCAGAAGGTTATGATGCGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTACCCTCCCTGGCTCTGAGATGTTTGGGCCCAGGCACAGAGACCGGAGAGGCCTGAGGAGCAGAGGGCATCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGCGGGCAGCTAGCCAGGAAACCTCAGTCCTACAACTGCAAGGAATTTGATTCTGCCACAGCCACCATTCATG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGAAGCAGATTTTTCCGAGAATCTTCCAATAAGAGCTCAGCCTGATAAGACTCTAAGCAAAAAACCCCCTGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCAACCTGGACTTCTGAGCTACAGAACGGTGAGATAATAAACTTGTGTTGTGTTAAGTAGCTAAGTTTGTGGAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTTGTTTCACCAGCAAGAGAAAACGATTACCATTACCTTCCCATTTGGCTGGCCCTTCAATGCCTTAAACCAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAAATGGCCTATGCTGGAAATTTCTTTGGGTCTCAAGTTTACCTTCTTGAGTCTTTGAATAATGCCACCCACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGTGCAGCACGTGACACTTCCCGGTACATTTCACACATAATTTCATTCAATTCTCTCAGCAGCCCTGAGAAGTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TAGGTATATTATGCTTCTTATTTTACAAAGGAGGAAACTGAAATTTAAAGAAGTGATTTTGCTTGAGGCTTCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGAACTGGGGTTGCAAGCCAGGTTTCCTGCTTCCAAATCACATGCACTTTTTTGCCACTGCCCCCGGCTGCCTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGTGTCTCCAGACATCTGTTGTCTGAACACAGTTTCTCCTATCCAGTGGGCTGGACTTTCTGGTGAGACTGTGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCTTCCTGTTGCTGAGAAATGACTGAGTGAAGCCGGCGGATGGTGTACTTGGGATGCTGAGGAGAGACTCGCTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCATTTGCAGGAGGTGCTGGCGGGTGCCTCCTGATGCCATGTTCAACTCAGGATCTACAGTGGGAACTGGGATC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGCTCTCGGGGCTGCATTCAGACAGGAGATCCGCACGCAGCTGGTGGAGCAGTTCAAATGTCTGGAGCAGCAAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGAGTCGCGACTGCAGCTGCTTCAAGACCTCCAGGAGTTTTTCCGCCGGAAAGCTGAGATTGAGCTCGAGTAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCCCGCAGCCTGGAGAAGCTGGCTGAGCGCTTCTCCTCCAAAATCCGCAGCTCCCGGGAGCACCAGTTCAAGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGACCAGTACCTCCTCTCGCCTGTGAACTGTTGGTATCTGGTTCTGCATCAGACCCGGCGGGAGAGCCGAGACC 1406
Query 1 -----------------------ATGAACAATGTCATCGTCCGCCTCTCCCAGATCAGTGAGGATGTCATCAGA 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATGCCACCCTCAATGACATCTTCATGAACAATGTCATCGTCCGCCTCTCCCAGATCAGTGAGGATGTCATCAGA 1480
Query 52 CTCTTCAAAAAGAGCAAGGAGATTGGCCTGCAGATGCACGAGGAGCTCCTGAAGGTGACCAATGAGCTCTACAC 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTCTTCAAAAAGAGCAAGGAGATTGGCCTGCAGATGCACGAGGAGCTCCTGAAGGTGACCAATGAGCTCTACAC 1554
Query 126 AGTCATGAAAACCTACCACATGTACCATGCAGAGAGCATCAGTGCGGAAAGCAAGCTGAAGGAGGCTGAGAAGC 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGTCATGAAAACCTACCACATGTACCATGCAGAGAGCATCAGTGCGGAAAGCAAGCTGAAGGAGGCTGAGAAGC 1628
Query 200 AGGAGGAGAAGCAGTTCAATAAGTCAGGAGACCTCAGCATGAACCTGCTCCGGCACGAGGACCGGCCCCAGCGC 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGGAGGAGAAGCAGTTCAATAAGTCAGGAGACCTCAGCATGAACCTGCTCCGGCACGAGGACCGGCCCCAGCGC 1702
Query 274 CGCAGCTCTGTGAAGAAGATTGAGAAGATGAAGGAGAAGAGGCAGGCCAAGTACTCTGAGAACAAGCTGAAATG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CGCAGCTCTGTGAAGAAGATTGAGAAGATGAAGGAGAAGAGGCAGGCCAAGTACTCTGAGAACAAGCTGAAATG 1776
Query 348 CACAAAGGCCCGGAATGACTACTTGCTCAATCTGGCAGCCACCAACGCAGCTATAAGCAAATACTACATCCATG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CACAAAGGCCCGGAATGACTACTTGCTCAATCTGGCAGCCACCAACGCAGCTATAAGCAAATACTACATCCATG 1850
Query 422 ATGTCTCTGATCTGATCGATTGCTGTGATTTGGGCTTCCATGCCAGCCTGGCCCGCACCTTCCGGACCTATCTC 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATGTCTCTGATCTGATCGATTGCTGTGATTTGGGCTTCCATGCCAGCCTGGCCCGCACCTTCCGGACCTATCTC 1924
Query 496 TCAGCTGAATACAACCTGGAGACCTCTCGCCACGAAGGGCTGGATGTCATTGAGAATGCAGTGGACAACCTGGA 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TCAGCTGAATACAACCTGGAGACCTCTCGCCACGAAGGGCTGGATGTCATTGAGAATGCAGTGGACAACCTGGA 1998
Query 570 TTCCCGAAGTGACAAGCACACAGTCATGGACATGTGCAATCAAGTCTTCTGCCCTCCACTCAAGTTCGAGTTCC 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TTCCCGAAGTGACAAGCACACAGTCATGGACATGTGCAATCAAGTCTTCTGCCCTCCACTCAAGTTCGAGTTCC 2072
Query 644 AGCCCCACATGGGGGATGAGGTCTGCCAGGTCAGCGCTCAGCAGCCCGTCCAGACAGAACTGCTCATGCGTTAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AGCCCCACATGGGGGATGAGGTCTGCCAGGTCAGCGCTCAGCAGCCCGTCCAGACAGAACTGCTCATGCGTTAT 2146
Query 718 CACCAGCTGCAGTCCAGACTGGCCACCCTCAAGATAGAGAATGAGGAGGTTAGGAAAACCCTGGATGCCACCAT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CACCAGCTGCAGTCCAGACTGGCCACCCTCAAGATAGAGAATGAGGAGGTTAGGAAAACCCTGGATGCCACCAT 2220
Query 792 GCAGACATTACAGGACATGCTGACTGTGGAGGACTTTGATGTCTCCGATGCCTTCCAACACAGTCGATCGACAG 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GCAGACATTACAGGACATGCTGACTGTGGAGGACTTTGATGTCTCCGATGCCTTCCAACACAGTCGATCGACAG 2294
Query 866 AGTCCGTCAAGTCGGCTGCCTCTGAGGCCTACATGAGCAAGATCAACATTGCCAAGAGGAGAGCCAACCAGCAG 939
||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AGTCCGTCAAGTCGGCTGCCTCTGAGACCTACATGAGCAAGATCAACATTGCCAAGAGGAGAGCCAACCAGCAG 2368
Query 940 GAAACAGAAATGTTTTATTTTACAAACGGGCCT-----GATGATGT---------TTTCCCCAT-------TTG 992
|||||||||||||||||||||||||| .| ||..|||| |..||.||| .||
Sbjct 2369 GAAACAGAAATGTTTTATTTTACAAA-----ATTTAAAGAGTATGTGAATGGCAGTAACCTCATCACCAAGCTG 2437
Query 993 CCATCCAAG--------ACTC----------------------------------------------------- 1005
|...||||| ||||
Sbjct 2438 CAGGCCAAGCACGATTTACTCAAGCAGACCCTGGGCGAAGGGGAAAGAGCAGAATGCGGCACCACCAGGATTCA 2511
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 2512 GGACAAGCTATACCGCTTGTAGTCGAGAGCTGCATCCGTTACATCAATTTATATGGACTCCAGCAGCAGGGGAT 2585
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 2586 CTTCAGAGTGCCAGGATCTCAGGTGGAAGTCAATGACATCAAAAATTCCTTTGAGAGAGGTGAAGACCCCCTTG 2659
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 2660 TGGACGATCAAAATGAACGAGATATCAATTCAGTCGCTGGTGTTTTAAAACTGTATTTCCGAGGACTGGAAAAC 2733
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 2734 CCACTCTTTCCTAAGGAAAGGTTTCAAGATTTGATATCTACTATTAAACTGGAGAACCCAGCCGAGAGGGTGCA 2807
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 2808 CCAGATCCAACAAATCCTCGTCACCCTTCCCCGCGTGGTCATTGTGGTCATGAGATACCTCTTCGCTTTCCTCA 2881
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 2882 ACCACCTCTCCCAGTATAGCGACGAGAACATGATGGATCCCTACAACCTGGCCATCTGCTTCGGGCCTACCCTC 2955
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 2956 ATGCACATCCCTGATGGGCAGGACCCTGTGTCCTGCCAGGCACACATCAATGAAGTCATCAAAACCATCATCAT 3029
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 3030 CCATCATGAAGCCATCTTCCCCAGCCCCCGGGAGCTAGAGGGACCTGTGTATGAAAAATGCATGGCTGGAGGGG 3103
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 3104 AAGAATATTGTGACAGCCCACACAGCGAGCCAGGGGCCATCGATGAAGTTGACCATGACAATGGCACTGAGCCT 3177
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 3178 CATACCAGCGATGAAGAAGTGGAGCAGATCGAGGCTATTGCCAAGTTTGACTACATGGGGCGGTCCCCGCGTGA 3251
Query 1006 -------------------------------------------------------------------------- 1005
Sbjct 3252 GCTATCCTTCAAGAAGGGGGCCTCGCTGCTCCTGTACCACCGCGCCTCGGAGGACTGGTGGGAGGGCCGGCACA 3325
Query 1006 ------------------------------------------ 1005
Sbjct 3326 ACGGCGTGGATGGACTCATCCCCCATCAGTACATAGTTGTAC 3367
